CmaCh00G000710 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh00G000710
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionProtein TIC 214
LocationCma_Chr00 : 3458553 .. 3459033 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCTACTACCACAAACTCAATGCGTAATCTTAGCAATCAATGTGTATTCCCTCATAATCTCATCATTCATTATTCAACCATTTCATTTTACCAAGTTCAATGTTAGTCAGATTAGTCAAGATTTCTATTTTCGATGCAACAACAAGATGTTCTTTGTAAGAAGTCGTTTTGTTGGTTGGTTAATTGGTCACATTTTCTTCATTCAATTGGTTGGATTGATATTAGTCACTATAGCAAAAGAATTCTATGTAGATCTAATAAGTACCTTGGGTCAGAATTGAGAAATTCTATGGCTCGAATCTTTAGTATTCTCTTATTACCTGTGTCTACTATTTAGGCAGAATACATTCACCCATTATGACTAAGAAACTGAAAGAAACGGAGGGGACTAAACAGAAACAAGAGGGATCTACCGAAGAAGATACTTCTCCTTCCCTTTGTTTCAGAAGAAAAGGAGGATCTGGACAAAATAGATGA

mRNA sequence

ATGGATCTACTACCACAAACTCAATGCGTAATCTTAGCAATCAATGTGTATTCCCTCATAATCTCATCATTCATTATTCAACCATTTCATTTTACCAAGTTCAATGTTAGTCAGATTAGTCAAGATTTCTATTTTCGATGCAACAACAAGATGTTCTTTGTAAGAAGTCGTTTTGTTGGTTGGTTAATTGGTCACATTTTCTTCATTCAATTGGTTGGATTGATATTAGTCACTATAGCAAAAGAATTCTATGTAGATCTAATAAGCAGAATACATTCACCCATTATGACTAAGAAACTGAAAGAAACGGAGGGGACTAAACAGAAACAAGAGGGATCTACCGAAGAAGATACTTCTCCTTCCCTTTGTTTCAGAAGAAAAGGAGGATCTGGACAAAATAGATGA

Coding sequence (CDS)

ATGGATCTACTACCACAAACTCAATGCGTAATCTTAGCAATCAATGTGTATTCCCTCATAATCTCATCATTCATTATTCAACCATTTCATTTTACCAAGTTCAATGTTAGTCAGATTAGTCAAGATTTCTATTTTCGATGCAACAACAAGATGTTCTTTGTAAGAAGTCGTTTTGTTGGTTGGTTAATTGGTCACATTTTCTTCATTCAATTGGTTGGATTGATATTAGTCACTATAGCAAAAGAATTCTATGTAGATCTAATAAGCAGAATACATTCACCCATTATGACTAAGAAACTGAAAGAAACGGAGGGGACTAAACAGAAACAAGAGGGATCTACCGAAGAAGATACTTCTCCTTCCCTTTGTTTCAGAAGAAAAGGAGGATCTGGACAAAATAGATGA

Protein sequence

MDLLPQTQCVILAINVYSLIISSFIIQPFHFTKFNVSQISQDFYFRCNNKMFFVRSRFVGWLIGHIFFIQLVGLILVTIAKEFYVDLISRIHSPIMTKKLKETEGTKQKQEGSTEEDTSPSLCFRRKGGSGQNR
Homology
[Close]
BLAST of CmaCh00G000710 vs. Swiss-Prot
Match: TI214_MORIN (Protein TIC 214 OS=Morus indica GN=TIC214 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 7.0e-15
Identity = 64/162 (39.51%), Postives = 82/162 (50.62%), Query Frame = 1 

Query: 14  INVYSLIISSFIIQPF-HFT--KFNVSQISQDFYFRCNNKMFFVRSRFVGWLIGHIFFIQ 73
           +++  + +++ I Q F HF      + ++   + FRCNNKM FV S FVGWLIGHI F++
Sbjct: 127 LSIQCVFLNNLIFQLFNHFILPSSMLVRLVNIYMFRCNNKMLFVTSSFVGWLIGHILFMK 186

Query: 74  LVGLILVTI---------------AKEFYVDLIS------------RIHSPIMTKKLKET 128
            VGL+LV I                + F V + S            RI SPI+TKKLKET
Sbjct: 187 WVGLVLVWIQQNNSIRSNKYLMSELRNFMVRIFSILLFITCVYYLGRIPSPILTKKLKET 246

[Close]
BLAST of CmaCh00G000710 vs. Swiss-Prot
Match: TI214_DAUCA (Protein TIC 214 OS=Daucus carota GN=TIC214 PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 5.0e-13
Identity = 62/168 (36.90%), Postives = 82/168 (48.81%), Query Frame = 1 

Query: 14  INVYSLIISSFIIQPF-HFT--KFNVSQISQDFYFRCNNKMFFVRSRFVGWLIGHIFFIQ 73
           +++  + +++ I Q F HF      ++++   + FRCNNKM FV S FVGWLIGHI F++
Sbjct: 127 LSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVTSSFVGWLIGHILFMK 186

Query: 74  LVGLILVTI-----------------------AKEFYVDL-------ISRIHSPIMTKKL 128
            VGL+LV I                       A+ F + L       + RI SPI TKKL
Sbjct: 187 WVGLVLVWIRQNNSIRSNKYIRSNKSELINYMARIFSILLFITCVYYLGRIPSPIFTKKL 246

[Close]
BLAST of CmaCh00G000710 vs. Swiss-Prot
Match: TI214_POPTR (Protein TIC 214 OS=Populus trichocarpa GN=TIC214 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.2e-12
Identity = 62/170 (36.47%), Postives = 82/170 (48.24%), Query Frame = 1 

Query: 14  INVYSLIISSFIIQPF-HFT--KFNVSQISQDFYFRCNNKMFFVRSRFVGWLIGHIFFIQ 73
           +++  + +++ I Q F HF      + ++   + FRCNNKM FV S FVGWLIGHI F++
Sbjct: 127 LSIQCVFLNNLIFQLFNHFILPSSMLVRLVNIYMFRCNNKMLFVTSSFVGWLIGHILFMK 186

Query: 74  LVGLILV--------------------------TIAKEFYVDL-------ISRIHSPIMT 128
            VGLILV                          ++A+ F + L       + RI SPI T
Sbjct: 187 WVGLILVWIQQNNSLRSNKYIRSNKYLVSELRNSMARIFSILLFITCVYSLGRIPSPIFT 246

[Close]
BLAST of CmaCh00G000710 vs. Swiss-Prot
Match: TI214_POPAL (Protein TIC 214 OS=Populus alba GN=TIC214 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.2e-12
Identity = 62/170 (36.47%), Postives = 82/170 (48.24%), Query Frame = 1 

Query: 14  INVYSLIISSFIIQPF-HFT--KFNVSQISQDFYFRCNNKMFFVRSRFVGWLIGHIFFIQ 73
           +++  + +++ I Q F HF      + ++   + FRCNNKM FV S FVGWLIGHI F++
Sbjct: 127 LSIQCVFLNNLIFQLFNHFILPSSMLVRLVNIYMFRCNNKMLFVTSSFVGWLIGHILFMK 186

Query: 74  LVGLILV--------------------------TIAKEFYVDL-------ISRIHSPIMT 128
            VGLILV                          ++A+ F + L       + RI SPI T
Sbjct: 187 WVGLILVWIQQNNSLRSNKYIRSNKYLVSELRNSMARIFSILLFITCVYSLGRIPSPIFT 246

[Close]
BLAST of CmaCh00G000710 vs. Swiss-Prot
Match: TI214_COFAR (Protein TIC 214 OS=Coffea arabica GN=TIC214 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 5.5e-12
Identity = 62/185 (33.51%), Postives = 89/185 (48.11%), Query Frame = 1 

Query: 7   TQCVILAINVYSLIISSFIIQPFHFTKFNVSQISQ---DFYFRCNNKMFFVRSRFVGWLI 66
           T+ ++  +++  + +++ I Q F++     S +++    + FRCNNKM FV S FVGWLI
Sbjct: 117 TRNLMRNLSIQCVFLNNLIFQLFNYFILPSSMLARLVNIYIFRCNNKMLFVTSSFVGWLI 176

Query: 67  GHIFFIQLVGLILVTI--------------------------AKEFYVDL-------ISR 126
           GHI F++ +GL+LV I                          A+ F + L       + R
Sbjct: 177 GHILFMKWLGLVLVWIRQNHSIRSNKYIRSNKYLVSELRIFMARIFSILLFITCVYYLGR 236

Query: 127 IHSPIMTKKLKET-----------------------EGTKQKQEGSTEEDTSPSLCFRRK 133
           I SPI+TKKLKET                       +GTKQ+QEGSTEED S SL    K
Sbjct: 237 IPSPILTKKLKETSKTEEGVESEEEGDVEIETTSEMKGTKQEQEGSTEEDPSSSLFSEEK 296

[Close]
BLAST of CmaCh00G000710 vs. TrEMBL
Match: A0A0S2IEV5_9ROSI (Ycf1 OS=Cucurbita lundelliana GN=ycf1 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.2e-16
Identity = 67/147 (45.58%), Postives = 80/147 (54.42%), Query Frame = 1 

Query: 8   QCVILAINVYSLIISSFIIQPFHFTKFNVSQISQDFYFRCNNKMFFVRSRFVGWLIGHIF 67
           QCV L   ++ L     +         N+S       FRCNNKM FV S FVGWLIGHI 
Sbjct: 127 QCVFLNNLIFQLFNHFILPSSMLVRLVNISM------FRCNNKMLFVTSSFVGWLIGHIL 186

Query: 68  FIQLVGLILV--------------------TIAKEFYVDL-------ISRIHSPIMTKKL 127
           F++ VGLILV                    ++A+ F + L       + RI SPI+TKKL
Sbjct: 187 FMKWVGLILVWIQQNNSIRSNKYLVSEFRNSMARIFSILLFITCVYYLGRIPSPILTKKL 246

[Close]
BLAST of CmaCh00G000710 vs. TrEMBL
Match: A0A0S2IFV0_9ROSI (Ycf1 OS=Cucurbita okeechobeensis GN=ycf1 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.2e-16
Identity = 67/147 (45.58%), Postives = 80/147 (54.42%), Query Frame = 1 

Query: 8   QCVILAINVYSLIISSFIIQPFHFTKFNVSQISQDFYFRCNNKMFFVRSRFVGWLIGHIF 67
           QCV L   ++ L     +         N+S       FRCNNKM FV S FVGWLIGHI 
Sbjct: 127 QCVFLNNLIFQLFNHFILPSSMLVRLVNISM------FRCNNKMLFVTSSFVGWLIGHIL 186

Query: 68  FIQLVGLILV--------------------TIAKEFYVDL-------ISRIHSPIMTKKL 127
           F++ VGLILV                    ++A+ F + L       + RI SPI+TKKL
Sbjct: 187 FMKWVGLILVWIQQNNSIRSNKYLVSEFRNSMARIFSILLFITCVYYLGRIPSPILTKKL 246

[Close]
BLAST of CmaCh00G000710 vs. TrEMBL
Match: A0A0S2IFY8_9ROSI (Uncharacterized protein OS=Cucurbita lundelliana PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.2e-16
Identity = 67/147 (45.58%), Postives = 80/147 (54.42%), Query Frame = 1 

Query: 8   QCVILAINVYSLIISSFIIQPFHFTKFNVSQISQDFYFRCNNKMFFVRSRFVGWLIGHIF 67
           QCV L   ++ L     +         N+S       FRCNNKM FV S FVGWLIGHI 
Sbjct: 127 QCVFLNNLIFQLFNHFILPSSMLVRLVNISM------FRCNNKMLFVTSSFVGWLIGHIL 186

Query: 68  FIQLVGLILV--------------------TIAKEFYVDL-------ISRIHSPIMTKKL 127
           F++ VGLILV                    ++A+ F + L       + RI SPI+TKKL
Sbjct: 187 FMKWVGLILVWIQQNNSIRSNKYLVSEFRNSMARIFSILLFITCVYYLGRIPSPILTKKL 246

[Close]
BLAST of CmaCh00G000710 vs. TrEMBL
Match: A0A0S2IGR1_9ROSI (Ycf1 OS=Cucurbita okeechobeensis subsp. martinezii GN=ycf1 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.2e-16
Identity = 67/147 (45.58%), Postives = 80/147 (54.42%), Query Frame = 1 

Query: 8   QCVILAINVYSLIISSFIIQPFHFTKFNVSQISQDFYFRCNNKMFFVRSRFVGWLIGHIF 67
           QCV L   ++ L     +         N+S       FRCNNKM FV S FVGWLIGHI 
Sbjct: 127 QCVFLNNLIFQLFNHFILPSSMLVRLVNISM------FRCNNKMLFVTSSFVGWLIGHIL 186

Query: 68  FIQLVGLILV--------------------TIAKEFYVDL-------ISRIHSPIMTKKL 127
           F++ VGLILV                    ++A+ F + L       + RI SPI+TKKL
Sbjct: 187 FMKWVGLILVWIQQNNSIRSNKYLVSEFRNSMARIFSILLFITCVYYLGRIPSPILTKKL 246

[Close]
BLAST of CmaCh00G000710 vs. TrEMBL
Match: A0A0S2IGI3_CUCPE (Uncharacterized protein OS=Cucurbita pepo var. ozarkana PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.2e-16
Identity = 67/147 (45.58%), Postives = 80/147 (54.42%), Query Frame = 1 

Query: 8   QCVILAINVYSLIISSFIIQPFHFTKFNVSQISQDFYFRCNNKMFFVRSRFVGWLIGHIF 67
           QCV L   ++ L     +         N+S       FRCNNKM FV S FVGWLIGHI 
Sbjct: 127 QCVFLNNLIFQLFNHFILPSSMLVRLVNISM------FRCNNKMLFVTSSFVGWLIGHIL 186

Query: 68  FIQLVGLILV--------------------TIAKEFYVDL-------ISRIHSPIMTKKL 127
           F++ VGLILV                    ++A+ F + L       + RI SPI+TKKL
Sbjct: 187 FMKWVGLILVWIQQNNSIRSNKYLVSEFRNSMARIFSILLFITCVYYLGRIPSPILTKKL 246

[Close]
BLAST of CmaCh00G000710 vs. TAIR10
Match: ATCG01130.1 (ATCG01130.1 Ycf1 protein)

HSP 1 Score: 53.9 bits (128), Expect = 8.8e-08
Identity = 31/69 (44.93%), Postives = 45/69 (65.22%), Query Frame = 1 

Query: 14  INVYSLIISSFIIQPF-HFT--KFNVSQISQDFYFRCNNKMFFVRSRFVGWLIGHIFFIQ 73
           + +  + +++ I Q F HF      ++++   + FRCNNKM FV S FVGWLIGHI F++
Sbjct: 128 LRIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVTSSFVGWLIGHILFMK 187

Query: 74  LVGLILVTI 80
            VGL+LV I
Sbjct: 188 WVGLVLVWI 196

[Close]
BLAST of CmaCh00G000710 vs. TAIR10
Match: ATCG01000.1 (ATCG01000.1 Ycf1 protein)

HSP 1 Score: 53.9 bits (128), Expect = 8.8e-08
Identity = 31/69 (44.93%), Postives = 45/69 (65.22%), Query Frame = 1 

Query: 14  INVYSLIISSFIIQPF-HFT--KFNVSQISQDFYFRCNNKMFFVRSRFVGWLIGHIFFIQ 73
           + +  + +++ I Q F HF      ++++   + FRCNNKM FV S FVGWLIGHI F++
Sbjct: 128 LRIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVTSSFVGWLIGHILFMK 187

Query: 74  LVGLILVTI 80
            VGL+LV I
Sbjct: 188 WVGLVLVWI 196

[Close]
BLAST of CmaCh00G000710 vs. NCBI nr
Match: gi|952954888|gb|ALO22244.1| (Ycf1 (plastid) [Cucurbita lundelliana])

HSP 1 Score: 94.4 bits (233), Expect = 1.7e-16
Identity = 67/147 (45.58%), Postives = 80/147 (54.42%), Query Frame = 1 

Query: 8   QCVILAINVYSLIISSFIIQPFHFTKFNVSQISQDFYFRCNNKMFFVRSRFVGWLIGHIF 67
           QCV L   ++ L     +         N+S       FRCNNKM FV S FVGWLIGHI 
Sbjct: 127 QCVFLNNLIFQLFNHFILPSSMLVRLVNISM------FRCNNKMLFVTSSFVGWLIGHIL 186

Query: 68  FIQLVGLILV--------------------TIAKEFYVDL-------ISRIHSPIMTKKL 127
           F++ VGLILV                    ++A+ F + L       + RI SPI+TKKL
Sbjct: 187 FMKWVGLILVWIQQNNSIRSNKYLVSEFRNSMARIFSILLFITCVYYLGRIPSPILTKKL 246

[Close]
BLAST of CmaCh00G000710 vs. NCBI nr
Match: gi|952954499|gb|ALO21861.1| (hypothetical protein (plastid) [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 94.4 bits (233), Expect = 1.7e-16
Identity = 67/147 (45.58%), Postives = 80/147 (54.42%), Query Frame = 1 

Query: 8   QCVILAINVYSLIISSFIIQPFHFTKFNVSQISQDFYFRCNNKMFFVRSRFVGWLIGHIF 67
           QCV L   ++ L     +         N+S       FRCNNKM FV S FVGWLIGHI 
Sbjct: 127 QCVFLNNLIFQLFNHFILPSSMLVRLVNISM------FRCNNKMLFVTSSFVGWLIGHIL 186

Query: 68  FIQLVGLILV--------------------TIAKEFYVDL-------ISRIHSPIMTKKL 127
           F++ VGLILV                    ++A+ F + L       + RI SPI+TKKL
Sbjct: 187 FMKWVGLILVWIQQNNSIRSNKYLVSEFRNSMARIFSILLFITCVYYLGRIPSPILTKKL 246

[Close]
BLAST of CmaCh00G000710 vs. NCBI nr
Match: gi|952954432|gb|ALO21795.1| (Ycf1 (plastid) [Cucurbita argyrosperma var. palmeri])

HSP 1 Score: 94.4 bits (233), Expect = 1.7e-16
Identity = 67/147 (45.58%), Postives = 80/147 (54.42%), Query Frame = 1 

Query: 8   QCVILAINVYSLIISSFIIQPFHFTKFNVSQISQDFYFRCNNKMFFVRSRFVGWLIGHIF 67
           QCV L   ++ L     +         N+S       FRCNNKM FV S FVGWLIGHI 
Sbjct: 127 QCVFLNNLIFQLFNHFILPSSMLVRLVNISM------FRCNNKMLFVTSSFVGWLIGHIL 186

Query: 68  FIQLVGLILV--------------------TIAKEFYVDL-------ISRIHSPIMTKKL 127
           F++ VGLILV                    ++A+ F + L       + RI SPI+TKKL
Sbjct: 187 FMKWVGLILVWIQQNNSIRSNKYLVSEFRNSMARIFSILLFITCVYYLGRIPSPILTKKL 246

[Close]
BLAST of CmaCh00G000710 vs. NCBI nr
Match: gi|952954368|gb|ALO21732.1| (hypothetical protein (plastid) [Cucurbita argyrosperma])

HSP 1 Score: 94.4 bits (233), Expect = 1.7e-16
Identity = 67/147 (45.58%), Postives = 80/147 (54.42%), Query Frame = 1 

Query: 8   QCVILAINVYSLIISSFIIQPFHFTKFNVSQISQDFYFRCNNKMFFVRSRFVGWLIGHIF 67
           QCV L   ++ L     +         N+S       FRCNNKM FV S FVGWLIGHI 
Sbjct: 127 QCVFLNNLIFQLFNHFILPSSMLVRLVNISM------FRCNNKMLFVTSSFVGWLIGHIL 186

Query: 68  FIQLVGLILV--------------------TIAKEFYVDL-------ISRIHSPIMTKKL 127
           F++ VGLILV                    ++A+ F + L       + RI SPI+TKKL
Sbjct: 187 FMKWVGLILVWIQQNNSIRSNKYLVSEFRNSMARIFSILLFITCVYYLGRIPSPILTKKL 246

[Close]
BLAST of CmaCh00G000710 vs. NCBI nr
Match: gi|952954340|gb|ALO21704.1| (Ycf1 (plastid) [Cucurbita argyrosperma])

HSP 1 Score: 94.4 bits (233), Expect = 1.7e-16
Identity = 67/147 (45.58%), Postives = 80/147 (54.42%), Query Frame = 1 

Query: 8   QCVILAINVYSLIISSFIIQPFHFTKFNVSQISQDFYFRCNNKMFFVRSRFVGWLIGHIF 67
           QCV L   ++ L     +         N+S       FRCNNKM FV S FVGWLIGHI 
Sbjct: 127 QCVFLNNLIFQLFNHFILPSSMLVRLVNISM------FRCNNKMLFVTSSFVGWLIGHIL 186

Query: 68  FIQLVGLILV--------------------TIAKEFYVDL-------ISRIHSPIMTKKL 127
           F++ VGLILV                    ++A+ F + L       + RI SPI+TKKL
Sbjct: 187 FMKWVGLILVWIQQNNSIRSNKYLVSEFRNSMARIFSILLFITCVYYLGRIPSPILTKKL 246

The following BLAST results are available for this feature:
BLAST of CmaCh00G000710 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TI214_MORIN7.0e-1539.51Protein TIC 214 OS=Morus indica GN=TIC214 PE=3 SV=1[more]
TI214_DAUCA5.0e-1336.90Protein TIC 214 OS=Daucus carota GN=TIC214 PE=3 SV=1[more]
TI214_POPTR3.2e-1236.47Protein TIC 214 OS=Populus trichocarpa GN=TIC214 PE=3 SV=1[more]
TI214_POPAL3.2e-1236.47Protein TIC 214 OS=Populus alba GN=TIC214 PE=3 SV=1[more]
TI214_COFAR5.5e-1233.51Protein TIC 214 OS=Coffea arabica GN=TIC214 PE=3 SV=1[more]
BLAST of CmaCh00G000710 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0S2IEV5_9ROSI1.2e-1645.58Ycf1 OS=Cucurbita lundelliana GN=ycf1 PE=4 SV=1[more]
A0A0S2IFV0_9ROSI1.2e-1645.58Ycf1 OS=Cucurbita okeechobeensis GN=ycf1 PE=4 SV=1[more]
A0A0S2IFY8_9ROSI1.2e-1645.58Uncharacterized protein OS=Cucurbita lundelliana PE=4 SV=1[more]
A0A0S2IGR1_9ROSI1.2e-1645.58Ycf1 OS=Cucurbita okeechobeensis subsp. martinezii GN=ycf1 PE=4 SV=1[more]
A0A0S2IGI3_CUCPE1.2e-1645.58Uncharacterized protein OS=Cucurbita pepo var. ozarkana PE=4 SV=1[more]
BLAST of CmaCh00G000710 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG01130.18.8e-0844.93ATCG01130.1 Ycf1 protein[more]
ATCG01000.18.8e-0844.93ATCG01000.1 Ycf1 protein[more]
BLAST of CmaCh00G000710 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|952954888|gb|ALO22244.1|1.7e-1645.58Ycf1 (plastid) [Cucurbita lundelliana][more]
gi|952954499|gb|ALO21861.1|1.7e-1645.58hypothetical protein (plastid) [Cucurbita argyrosperma subsp. sororia][more]
gi|952954432|gb|ALO21795.1|1.7e-1645.58Ycf1 (plastid) [Cucurbita argyrosperma var. palmeri][more]
gi|952954368|gb|ALO21732.1|1.7e-1645.58hypothetical protein (plastid) [Cucurbita argyrosperma][more]
gi|952954340|gb|ALO21704.1|1.7e-1645.58Ycf1 (plastid) [Cucurbita argyrosperma][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008896TIC214
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006810 transport
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009507 chloroplast
cellular_component GO:0009528 plastid inner membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh00G000710.1CmaCh00G000710.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008896Protein TIC214PFAMPF05758Ycf1coord: 28..82
score: 8.3
NoneNo IPR availablePANTHERPTHR33163FAMILY NOT NAMEDcoord: 45..122
score: 3.9
NoneNo IPR availablePANTHERPTHR33163:SF3MEMBRANE PROTEIN YCF1-RELATEDcoord: 45..122
score: 3.9

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh00G000710CmaCh00G000440Cucurbita maxima (Rimu)cmacmaB002
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh00G000710Cucurbita maxima (Rimu)cmacmaB006
CmaCh00G000710Cucurbita maxima (Rimu)cmacmaB016
CmaCh00G000710Cucurbita moschata (Rifu)cmacmoB000
CmaCh00G000710Cucurbita moschata (Rifu)cmacmoB003