CmaCh00G000670 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh00G000670
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionPhotosystem II D2 protein
LocationCma_Chr00 : 3285772 .. 3286179 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGATGGATGGTGCAAATAGATTCCTTCCAGGTAACCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAAACTGCTTTTGGTACCAAATCTTTTGAGGTTTTCCAATAAAAAAGGGATTATTACATTTCTTTCTCTTATTTGTACCAGTAACTGCTTTATGGATGAGTGCTTGCTCTTGGAGTAGTAGTTGGTCTGGCCCTGAACCTACGTGCCTATGACTTTGTTTCTCAGGAAATCCATTGGAAGATCCTGAATTTGAGACTTTCTATCTATACACCCAAAATCTTCTCTTAACCGAAGGGATTCGTACTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACACACCTTACCTTATATTACCTGAGGAGGTTCTACCGCGTGGAAACGCTCTTTAA

mRNA sequence

ATGGTGATGGATGGTGCAAATAGATTCCTTCCAGGAAATCCATTGGAAGATCCTGAATTTGAGACTTTCTATCTATACACCCAAAATCTTCTCTTAACCGAAGGGATTCGTACTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACACACCTTACCTTATATTACCTGAGGAGGTTCTACCGCGTGGAAACGCTCTTTAA

Coding sequence (CDS)

ATGGTGATGGATGGTGCAAATAGATTCCTTCCAGGAAATCCATTGGAAGATCCTGAATTTGAGACTTTCTATCTATACACCCAAAATCTTCTCTTAACCGAAGGGATTCGTACTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACACACCTTACCTTATATTACCTGAGGAGGTTCTACCGCGTGGAAACGCTCTTTAA

Protein sequence

MVMDGANRFLPGNPLEDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENTPYLILPEEVLPRGNAL
Homology
[Close]
BLAST of CmaCh00G000670 vs. Swiss-Prot
Match: PSBD_CERDE (Photosystem II D2 protein OS=Ceratophyllum demersum GN=psbD PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 6.9e-16
Identity = 42/51 (82.35%), Postives = 43/51 (84.31%), Query Frame = 1 

Query: 16  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENTPYLILPEEVLPRGNAL 67
           EDPEFETFY  T+NLLL EGIR WMAAQDQPHEN   LI PEEVLPRGNAL
Sbjct: 308 EDPEFETFY--TKNLLLNEGIRAWMAAQDQPHEN---LIFPEEVLPRGNAL 353

[Close]
BLAST of CmaCh00G000670 vs. Swiss-Prot
Match: PSBD_MESVI (Photosystem II D2 protein OS=Mesostigma viride GN=psbD PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 9.0e-16
Identity = 41/51 (80.39%), Postives = 43/51 (84.31%), Query Frame = 1 

Query: 16  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENTPYLILPEEVLPRGNAL 67
           EDPEFETFY  T+NLLL EGIR WMAAQDQPHEN   L+ PEEVLPRGNAL
Sbjct: 309 EDPEFETFY--TKNLLLNEGIRAWMAAQDQPHEN---LVFPEEVLPRGNAL 354

[Close]
BLAST of CmaCh00G000670 vs. Swiss-Prot
Match: PSBD_ACOCL (Photosystem II D2 protein OS=Acorus calamus GN=psbD PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.2e-15
Identity = 41/51 (80.39%), Postives = 43/51 (84.31%), Query Frame = 1 

Query: 16  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENTPYLILPEEVLPRGNAL 67
           EDPEFETFY  T+N+LL EGIR WMAAQDQPHEN   LI PEEVLPRGNAL
Sbjct: 308 EDPEFETFY--TKNILLNEGIRAWMAAQDQPHEN---LIFPEEVLPRGNAL 353

[Close]
BLAST of CmaCh00G000670 vs. Swiss-Prot
Match: PSBD_LEPVR (Photosystem II D2 protein OS=Lepidium virginicum GN=psbD PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.2e-15
Identity = 41/51 (80.39%), Postives = 43/51 (84.31%), Query Frame = 1 

Query: 16  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENTPYLILPEEVLPRGNAL 67
           EDPEFETFY  T+N+LL EGIR WMAAQDQPHEN   LI PEEVLPRGNAL
Sbjct: 308 EDPEFETFY--TKNILLNEGIRAWMAAQDQPHEN---LIFPEEVLPRGNAL 353

[Close]
BLAST of CmaCh00G000670 vs. Swiss-Prot
Match: PSBD_TOBAC (Photosystem II D2 protein OS=Nicotiana tabacum GN=psbD PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.2e-15
Identity = 41/51 (80.39%), Postives = 43/51 (84.31%), Query Frame = 1 

Query: 16  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENTPYLILPEEVLPRGNAL 67
           EDPEFETFY  T+N+LL EGIR WMAAQDQPHEN   LI PEEVLPRGNAL
Sbjct: 308 EDPEFETFY--TKNILLNEGIRAWMAAQDQPHEN---LIFPEEVLPRGNAL 353

[Close]
BLAST of CmaCh00G000670 vs. TrEMBL
Match: A0A0S0ZJN6_9ASTE (Photosystem II D2 protein (Fragment) OS=Pyrenacantha thomsoniana GN=psbD PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 4.5e-14
Identity = 42/51 (82.35%), Postives = 44/51 (86.27%), Query Frame = 1 

Query: 16  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENTPYLILPEEVLPRGNAL 67
           EDPEFETFY  T+N+LL EGIR WMAAQDQPHEN   LILPEEVLPRGNAL
Sbjct: 308 EDPEFETFY--TKNILLNEGIRAWMAAQDQPHEN---LILPEEVLPRGNAL 353

[Close]
BLAST of CmaCh00G000670 vs. TrEMBL
Match: Q9GFG2_CERDE (Photosystem II D2 protein (Fragment) OS=Ceratophyllum demersum GN=psbD PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 7.7e-14
Identity = 42/51 (82.35%), Postives = 43/51 (84.31%), Query Frame = 1 

Query: 16  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENTPYLILPEEVLPRGNAL 67
           EDPEFETFY  T+NLLL EGIR WMAAQDQPHEN   LI PEEVLPRGNAL
Sbjct: 280 EDPEFETFY--TKNLLLNEGIRAWMAAQDQPHEN---LIFPEEVLPRGNAL 325

[Close]
BLAST of CmaCh00G000670 vs. TrEMBL
Match: C3KEG2_CERDE (Photosystem II D2 protein OS=Ceratophyllum demersum GN=psbD PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 7.7e-14
Identity = 42/51 (82.35%), Postives = 43/51 (84.31%), Query Frame = 1 

Query: 16  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENTPYLILPEEVLPRGNAL 67
           EDPEFETFY  T+NLLL EGIR WMAAQDQPHEN   LI PEEVLPRGNAL
Sbjct: 308 EDPEFETFY--TKNLLLNEGIRAWMAAQDQPHEN---LIFPEEVLPRGNAL 353

[Close]
BLAST of CmaCh00G000670 vs. TrEMBL
Match: A0A0G4AKL9_METGY (Photosystem II D2 protein OS=Metasequoia glyptostroboides GN=psbD PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.3e-13
Identity = 41/51 (80.39%), Postives = 43/51 (84.31%), Query Frame = 1 

Query: 16  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENTPYLILPEEVLPRGNAL 67
           EDPEFETFY  T+N+LL EGIR WMAAQDQPHEN   LI PEEVLPRGNAL
Sbjct: 308 EDPEFETFY--TKNILLNEGIRAWMAAQDQPHEN---LIFPEEVLPRGNAL 353

[Close]
BLAST of CmaCh00G000670 vs. TrEMBL
Match: T1QKQ1_EUCPO (Photosystem II D2 protein OS=Eucalyptus polybractea GN=psbD PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.3e-13
Identity = 41/51 (80.39%), Postives = 43/51 (84.31%), Query Frame = 1 

Query: 16  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENTPYLILPEEVLPRGNAL 67
           EDPEFETFY  T+N+LL EGIR WMAAQDQPHEN   LI PEEVLPRGNAL
Sbjct: 308 EDPEFETFY--TKNILLNEGIRAWMAAQDQPHEN---LIFPEEVLPRGNAL 353

[Close]
BLAST of CmaCh00G000670 vs. TAIR10
Match: ATCG00270.1 (ATCG00270.1 photosystem II reaction center protein D)

HSP 1 Score: 83.2 bits (204), Expect = 6.6e-17
Identity = 41/51 (80.39%), Postives = 43/51 (84.31%), Query Frame = 1 

Query: 16  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENTPYLILPEEVLPRGNAL 67
           EDPEFETFY  T+N+LL EGIR WMAAQDQPHEN   LI PEEVLPRGNAL
Sbjct: 308 EDPEFETFY--TKNILLNEGIRAWMAAQDQPHEN---LIFPEEVLPRGNAL 353

[Close]
BLAST of CmaCh00G000670 vs. NCBI nr
Match: gi|937634122|gb|ALI90641.1| (PsbD, partial (chloroplast) [Pyrenacantha thomsoniana])

HSP 1 Score: 84.7 bits (208), Expect = 6.5e-14
Identity = 42/51 (82.35%), Postives = 44/51 (86.27%), Query Frame = 1 

Query: 16  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENTPYLILPEEVLPRGNAL 67
           EDPEFETFY  T+N+LL EGIR WMAAQDQPHEN   LILPEEVLPRGNAL
Sbjct: 308 EDPEFETFY--TKNILLNEGIRAWMAAQDQPHEN---LILPEEVLPRGNAL 353

[Close]
BLAST of CmaCh00G000670 vs. NCBI nr
Match: gi|11022876|gb|AAG26169.1| (photosystem II D2 protein [Ceratophyllum demersum])

HSP 1 Score: 84.0 bits (206), Expect = 1.1e-13
Identity = 42/51 (82.35%), Postives = 43/51 (84.31%), Query Frame = 1 

Query: 16  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENTPYLILPEEVLPRGNAL 67
           EDPEFETFY  T+NLLL EGIR WMAAQDQPHEN   LI PEEVLPRGNAL
Sbjct: 280 EDPEFETFY--TKNLLLNEGIRAWMAAQDQPHEN---LIFPEEVLPRGNAL 325

[Close]
BLAST of CmaCh00G000670 vs. NCBI nr
Match: gi|159161155|ref|YP_001542442.1| (photosystem II protein D2 [Ceratophyllum demersum])

HSP 1 Score: 84.0 bits (206), Expect = 1.1e-13
Identity = 42/51 (82.35%), Postives = 43/51 (84.31%), Query Frame = 1 

Query: 16  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENTPYLILPEEVLPRGNAL 67
           EDPEFETFY  T+NLLL EGIR WMAAQDQPHEN   LI PEEVLPRGNAL
Sbjct: 308 EDPEFETFY--TKNLLLNEGIRAWMAAQDQPHEN---LIFPEEVLPRGNAL 353

[Close]
BLAST of CmaCh00G000670 vs. NCBI nr
Match: gi|11466345|ref|NP_038348.1| (photosystem II protein D2 [Mesostigma viride])

HSP 1 Score: 83.6 bits (205), Expect = 1.4e-13
Identity = 41/51 (80.39%), Postives = 43/51 (84.31%), Query Frame = 1 

Query: 16  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENTPYLILPEEVLPRGNAL 67
           EDPEFETFY  T+NLLL EGIR WMAAQDQPHEN   L+ PEEVLPRGNAL
Sbjct: 309 EDPEFETFY--TKNLLLNEGIRAWMAAQDQPHEN---LVFPEEVLPRGNAL 354

[Close]
BLAST of CmaCh00G000670 vs. NCBI nr
Match: gi|408899214|gb|AFU94441.1| (PsbD, partial (chloroplast) [Dichapetalum zenkeri])

HSP 1 Score: 83.2 bits (204), Expect = 1.9e-13
Identity = 41/51 (80.39%), Postives = 43/51 (84.31%), Query Frame = 1 

Query: 16  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENTPYLILPEEVLPRGNAL 67
           EDPEFETFY  T+N+LL EGIR WMAAQDQPHEN   LI PEEVLPRGNAL
Sbjct: 97  EDPEFETFY--TKNILLNEGIRAWMAAQDQPHEN---LIFPEEVLPRGNAL 142

The following BLAST results are available for this feature:
BLAST of CmaCh00G000670 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PSBD_CERDE6.9e-1682.35Photosystem II D2 protein OS=Ceratophyllum demersum GN=psbD PE=3 SV=1[more]
PSBD_MESVI9.0e-1680.39Photosystem II D2 protein OS=Mesostigma viride GN=psbD PE=3 SV=1[more]
PSBD_ACOCL1.2e-1580.39Photosystem II D2 protein OS=Acorus calamus GN=psbD PE=3 SV=1[more]
PSBD_LEPVR1.2e-1580.39Photosystem II D2 protein OS=Lepidium virginicum GN=psbD PE=3 SV=1[more]
PSBD_TOBAC1.2e-1580.39Photosystem II D2 protein OS=Nicotiana tabacum GN=psbD PE=3 SV=1[more]
BLAST of CmaCh00G000670 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0S0ZJN6_9ASTE4.5e-1482.35Photosystem II D2 protein (Fragment) OS=Pyrenacantha thomsoniana GN=psbD PE=3 SV... [more]
Q9GFG2_CERDE7.7e-1482.35Photosystem II D2 protein (Fragment) OS=Ceratophyllum demersum GN=psbD PE=3 SV=1[more]
C3KEG2_CERDE7.7e-1482.35Photosystem II D2 protein OS=Ceratophyllum demersum GN=psbD PE=3 SV=1[more]
A0A0G4AKL9_METGY1.3e-1380.39Photosystem II D2 protein OS=Metasequoia glyptostroboides GN=psbD PE=3 SV=1[more]
T1QKQ1_EUCPO1.3e-1380.39Photosystem II D2 protein OS=Eucalyptus polybractea GN=psbD PE=3 SV=1[more]
BLAST of CmaCh00G000670 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00270.16.6e-1780.39ATCG00270.1 photosystem II reaction center protein D[more]
BLAST of CmaCh00G000670 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|937634122|gb|ALI90641.1|6.5e-1482.35PsbD, partial (chloroplast) [Pyrenacantha thomsoniana][more]
gi|11022876|gb|AAG26169.1|1.1e-1382.35photosystem II D2 protein [Ceratophyllum demersum][more]
gi|159161155|ref|YP_001542442.1|1.1e-1382.35photosystem II protein D2 [Ceratophyllum demersum][more]
gi|11466345|ref|NP_038348.1|1.4e-1380.39photosystem II protein D2 [Mesostigma viride][more]
gi|408899214|gb|AFU94441.1|1.9e-1380.39PsbD, partial (chloroplast) [Dichapetalum zenkeri][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009772 photosynthetic electron transport in photosystem II
biological_process GO:0018298 protein-chromophore linkage
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009523 photosystem II
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function GO:0005506 iron ion binding
molecular_function GO:0016491 oxidoreductase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh00G000670.1CmaCh00G000670.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33149FAMILY NOT NAMEDcoord: 19..66
score: 1.2
NoneNo IPR availablePANTHERPTHR33149:SF2SUBFAMILY NOT NAMEDcoord: 19..66
score: 1.2

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh00G000670Cucurbita maxima (Rimu)cmacmaB006
CmaCh00G000670Cucurbita maxima (Rimu)cmacmaB016
CmaCh00G000670Cucurbita moschata (Rifu)cmacmoB000
CmaCh00G000670Cucurbita moschata (Rifu)cmacmoB003