Cla97C11G220540 (gene) Watermelon (97103) v2

Overview
NameCla97C11G220540
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionUnknown protein
LocationCla97Chr11 : 26525883 .. 26527844 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTCTCCTTGCCAGTCCCCAGATCGATGGTGTGTGATTTGGCCCAAAAGAATATTGAGTTTTCTTCGTCCTAAGGACGACACATCGGCTGAAACCACACGACCACCGATCAGGACATTGAAAGAACAGAATGGATTAATTTGGTATGGTTATTCCCTTTCCCCCTTATTTTGTTTTCGAGTGAATCTGTGGAATATTGTGGAATAAATGGAAGAAAAGAGAGAGAGAGAAGAGAAGAATTAGTGAGGTTTAACTTATTTGACGGGAAACAGTTTGGGATTTGGTGCAGGAAGTTGAGGATTCCTGGCTAATTTTGTTTTCATTCATCTCTCTTAGTTGCATGAATCAAAATTGCTTCCGTTCAGATCGCTGGCTGATGGTTATTACACAACAACCAAGGTATCTCATATATGTATTTCTCTCTCTATATAATATATTATATTAAAAATATATAGATCATTTCATATTTGATTTTAATAAAACAAACCATAAAATTTAATAACTTTTGTCAAATATTTTATTATTATTATTATTTTTCCCTTTTAAATACTGGTTTGTCGTCCCTAAACTCTCTGCTTTTGTTCAATTTATTTAGTCACTTTTAAAAGAAAAATGTTAGGTACATCTTAGGTTATATTGAGCATTTCTTAATCATAATCTTTCTCATAATAAATTCTTCTTGTTATTAAATTCTTTTTTTTTTTTTGTTAGACTAGAGTGGGACACACAAATATGAGTATTTATTTGGAATATTTATATGGATGACCCATTTTGGGAGGTCCACTCAAAATTTGGCCTCATGTCAAAAACATAATTTACCACTTTTAACCCTTTTTCGTTCTTTCTTATTCAGCCATTTCGTTTCCGTAACTTTTTTTCTTTTTTCGTTTTTTTTTGCTTTTCTTCTTCTTTTTCCGTTTGCCTTTTTCATTCAGACTTTCTTTTACGGAGATTTCAATCTATGTCGCCCTATTTTTTTTTTATTATTTTTAATTTTATTTTTATTTTTTTTCATCTTCCCAACAAGACTTTCGTAATCAGAATGGGAAGAATCTGAACCAAAATGAGAGGAAGAAAACGAAGCTAATCAGAGTGAGAGCGAGAGATTTATGAGTGATTGTAAGATCATCCGTCTCGCTTCTCATTCTTGTGCCTCACAAATACATTCTCGTTCCACGTTCTCATTCACGTGCGTTTGGTGTGGAACGAGAACGAGTTTTTATTTATTTATTTATTTTTCTCCACGGGATAGGAAGCTCATTTCAGGAATAAAATTGTTAAACTATAGAAAATACCTCTAAAATGTTTAATCTGTATTAAATGCTCATCAATTTTCAAAAGTTTTAGTAACACATTAACTTTCAAAAAATAGTTAAAAAATACCCTTAGGATTAGTTTTCATCTAGTACTTTATTTTAAAATACTCTTAAACTTTAAAAAGTTTTTGACATTCTCCTTAAATTAAAAAAAAAAATAAAAAATATCATTATCGTTAGTATGTGAATATATTTAAATTTTCAAAAGTTGCATTAATACTTTTAACTTTTTAAAGAAAAGAAAAAAAGTTTAAAGTCGGAAATGTTTTGCAGGTGCCCGTTGGTCTATCTCTAACTCCTAAATCAAGATCATTATTGGGTTAATGTAGTAAAAGCTCTTTTTTTTTTCCAGTTATGGTTTGAAAGGCATCAAAGATTATTTCAAGACAAAGTCTCGTGCATGGTTAGATTGTTTTGATTTGACTAATCTTAAAGGCTTTTTCTTGCCGTTCTCTTCCCGAATTGTATGCTATTATAAACTTTTGTTACTCACTTATTTACTTTCTTTTTTATCTTTTATATCTCCTGTACTAATTCTTTTCATTATATCATAGAAAAGTTCTCTTTTTTTTTTTTGGAAAGTTTGCATTATTGCCCTTCTCTTCAAGCACACGGTTTAGCTTCAAGCGCTTGTAAAGCGTGA

mRNA sequence

ATGGTTTCTCCTTGCCAGTCCCCAGATCGATGGTGTGTGATTTGGCCCAAAAGAATATTGAGTTTTCTTCGTCCTAAGGACGACACATCGGCTGAAACCACACGACCACCGATCAGGACATTGAAAGAACAGAATGGATTAATTTGGTATGTTTGGGATTTGGTGCAGGAAGTTGAGGATTCCTGGCTAATTTTGTTTTCATTCATCTCTCTTAGTTGCATGAATCAAAATTGCTTCCGTTCAGATCGCTGGCTGATGGTTATTACACAACAACCAAGTTTGCATTATTGCCCTTCTCTTCAAGCACACGGTTTAGCTTCAAGCGCTTGTAAAGCGTGA

Coding sequence (CDS)

ATGGTTTCTCCTTGCCAGTCCCCAGATCGATGGTGTGTGATTTGGCCCAAAAGAATATTGAGTTTTCTTCGTCCTAAGGACGACACATCGGCTGAAACCACACGACCACCGATCAGGACATTGAAAGAACAGAATGGATTAATTTGGTATGTTTGGGATTTGGTGCAGGAAGTTGAGGATTCCTGGCTAATTTTGTTTTCATTCATCTCTCTTAGTTGCATGAATCAAAATTGCTTCCGTTCAGATCGCTGGCTGATGGTTATTACACAACAACCAAGTTTGCATTATTGCCCTTCTCTTCAAGCACACGGTTTAGCTTCAAGCGCTTGTAAAGCGTGA

Protein sequence

MVSPCQSPDRWCVIWPKRILSFLRPKDDTSAETTRPPIRTLKEQNGLIWYVWDLVQEVEDSWLILFSFISLSCMNQNCFRSDRWLMVITQQPSLHYCPSLQAHGLASSACKA
Homology
[Close]
BLAST of Cla97C11G220540 vs. NCBI nr
Match: KGN60253.1 (hypothetical protein Csa_3G890090 [Cucumis sativus])

HSP 1 Score: 55.1 bits (131), Expect = 1.8e-04
Identity = 32/57 (56.14%), Postives = 34/57 (59.65%), Query Frame = 0 

Query: 12 CVIWPKRILSFLRPKDDTSAETTRPPIR-TLKEQNGLIWYVWDLVQEVEDSWLILFS 68
          CVIWPK  + FLRP  D S ETTRPPIR TL+              EVEDSWLIL S
Sbjct: 20 CVIWPKNKIEFLRP-IDASPETTRPPIRETLRSSE----------NEVEDSWLILIS 65

[Close]
BLAST of Cla97C11G220540 vs. TrEMBL
Match: tr|A0A0A0LEP3|A0A0A0LEP3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G890090 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.2e-04
Identity = 32/57 (56.14%), Postives = 34/57 (59.65%), Query Frame = 0 

Query: 12 CVIWPKRILSFLRPKDDTSAETTRPPIR-TLKEQNGLIWYVWDLVQEVEDSWLILFS 68
          CVIWPK  + FLRP  D S ETTRPPIR TL+              EVEDSWLIL S
Sbjct: 20 CVIWPKNKIEFLRP-IDASPETTRPPIRETLRSSE----------NEVEDSWLILIS 65

The following BLAST results are available for this feature:
BLAST of Cla97C11G220540 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN60253.11.8e-0456.14hypothetical protein Csa_3G890090 [Cucumis sativus][more]
BLAST of Cla97C11G220540 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LEP3|A0A0A0LEP3_CUCSA1.2e-0456.14Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G890090 PE=4 SV=1[more]
BLAST of Cla97C11G220540 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C11G220540 vs. TAIR10
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C11G220540.1Cla97C11G220540.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C11G220540Watermelon (97103) v2wmbwmbB005
Cla97C11G220540Watermelon (97103) v2wmbwmbB084
Cla97C11G220540Silver-seed gourdcarwmbB0057
Cla97C11G220540Silver-seed gourdcarwmbB0059
Cla97C11G220540Silver-seed gourdcarwmbB0656
Cla97C11G220540Silver-seed gourdcarwmbB0854
Cla97C11G220540Silver-seed gourdcarwmbB1095
Cla97C11G220540Cucumber (Gy14) v2cgybwmbB109
Cla97C11G220540Cucumber (Gy14) v2cgybwmbB182
Cla97C11G220540Cucumber (Gy14) v2cgybwmbB404
Cla97C11G220540Cucumber (Gy14) v1cgywmbB128
Cla97C11G220540Cucumber (Gy14) v1cgywmbB276
Cla97C11G220540Cucumber (Gy14) v1cgywmbB539
Cla97C11G220540Cucurbita maxima (Rimu)cmawmbB019
Cla97C11G220540Cucurbita maxima (Rimu)cmawmbB166
Cla97C11G220540Cucurbita maxima (Rimu)cmawmbB447
Cla97C11G220540Cucurbita maxima (Rimu)cmawmbB803
Cla97C11G220540Cucurbita maxima (Rimu)cmawmbB809
Cla97C11G220540Cucurbita moschata (Rifu)cmowmbB007
Cla97C11G220540Cucurbita moschata (Rifu)cmowmbB151
Cla97C11G220540Cucurbita moschata (Rifu)cmowmbB428
Cla97C11G220540Cucurbita moschata (Rifu)cmowmbB779
Cla97C11G220540Wild cucumber (PI 183967)cpiwmbB115
Cla97C11G220540Wild cucumber (PI 183967)cpiwmbB195
Cla97C11G220540Wild cucumber (PI 183967)cpiwmbB448
Cla97C11G220540Cucumber (Chinese Long) v3cucwmbB111
Cla97C11G220540Cucumber (Chinese Long) v3cucwmbB119
Cla97C11G220540Cucumber (Chinese Long) v3cucwmbB192
Cla97C11G220540Cucumber (Chinese Long) v3cucwmbB442
Cla97C11G220540Cucumber (Chinese Long) v2cuwmbB113
Cla97C11G220540Cucumber (Chinese Long) v2cuwmbB191
Cla97C11G220540Cucumber (Chinese Long) v2cuwmbB424
Cla97C11G220540Bottle gourd (USVL1VR-Ls)lsiwmbB120
Cla97C11G220540Bottle gourd (USVL1VR-Ls)lsiwmbB267
Cla97C11G220540Bottle gourd (USVL1VR-Ls)lsiwmbB431
Cla97C11G220540Melon (DHL92) v3.6.1medwmbB266
Cla97C11G220540Melon (DHL92) v3.6.1medwmbB312
Cla97C11G220540Melon (DHL92) v3.6.1medwmbB517
Cla97C11G220540Melon (DHL92) v3.5.1mewmbB281
Cla97C11G220540Melon (DHL92) v3.5.1mewmbB323
Cla97C11G220540Melon (DHL92) v3.5.1mewmbB524
Cla97C11G220540Watermelon (Charleston Gray)wcgwmbB064
Cla97C11G220540Watermelon (Charleston Gray)wcgwmbB099
Cla97C11G220540Watermelon (Charleston Gray)wcgwmbB323
Cla97C11G220540Watermelon (97103) v1wmwmbB086
Cla97C11G220540Watermelon (97103) v1wmwmbB255
Cla97C11G220540Watermelon (97103) v1wmwmbB358
Cla97C11G220540Wax gourdwgowmbB558