Cla97C11G214070 (gene) Watermelon (97103) v2

Overview
NameCla97C11G214070
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionProtein Ycf2
LocationCla97Chr11 : 7644906 .. 7647872 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGCCTACTCTGCCGAAAAAGGGGGCTGCTTTATTCCCTCACAAAATGCCTGTTCCACCATCTGGGCCCAGCAAGCAGCATAATTCTGTTCCGAGGCTGCGTTTCATTCCAGCAACAGTAGTATATGGTTCGAAGCGCCTTGGGGCGGCCCCTCAAATTGTGAATTTTTATTCACTTTATGATTTAATAACTCATAATCCGATCTCCCTAACTAAATATTTGCAACTTGACAATTTCAAACAGACTTTTCAAGTACTTAAATATTATTTAATGGATGAAAACGGGGGGATTTTTAATTCCGATCCATACAGTAACATCGTTTTCAATACATTTAATTTGAATTGGCATTTTCTGCATCATAATTATCACCATAATTATTGTGAAGAAAGACCTGGTCTATCGTAGTCCCCATTGCACCGCTAGATAAGAGGTTAGAATCTCAATCATGACAGTAGCAGAAATAGACACAAAAAGGAAATTCCAAGGGCTGAATGTAGACTAGCTTCAGCAAAGAAAATTAGATCGTCGGAAGTGAGAGATGGGATCGATTATCCCATAGTACTATCAAAATCTAGACATACCCAATCGAAAAAGGATGTTATCCAAACGCATTTCAAGCCCCGAAATAAGTACCCGCTACTGTCGAAGTGAATATCTCACACCGGGTAGCTTTTGCACATTTTCGTTAATCCATGAACAGGATCTATATAGACACATAGGCCCATGGATCCATACATCTCGATCGGAAAAGAATCAATAGAAAAAGAAAGAATCGGAATTGATCGATATATTTCTCGAAACAAACGAAAAGGAAACGAAACGAAAGACGAAACATAAATCATGGATCAACTAAGCCAAGCCCTCTCGGGGACTTGCTTAAGAATAAGAAAGAGGAATCTCATGTAAATACCATGGAATAAGGTTTGATCCTATTCATGGGGAATCTCGACGAAAAAAAAGGGATTGCAACTACATCAAAAACCGAGATTCGTCGACGTGAACGCACGCTTTGTCATGTTAGTGTGAGAACCTTAAATAAACTCACGATCAAGCTTTTTGATTTGTTTACTCAACTCGTAAAGGCAAACAAAAAAGGGATCCGCCTCGAATCAAAACTCTTTCTCCTTAGCACAAGCACTAAGTAAGCAAGCTACCTTTCTTTTCTACGCTACGATCTTTCTTCTCTTATGAAATTCAGAGTTTGTTTGATCGAGGGCGCTTCTCCCCAATATGAGATAAGTTGGCTATAGTCCGAACAGAACTCCAACTGGGCCAATTGCGTAATTATGACCTGAGGTAGCGAACGAGACAGCAAATGGATGGAAATTCTCCACTTAATGGCTGCCGCTTAACGCTCTGGCGCTCTGAATCTCGAAGGTCTTGGTAGGATTCTGACTTGCTGGCCCGTAAACCATTTCAGTGCAGGGCCCGTAAGACTCTTCTGGAACAATCGGATGACAGCCCCTTCGTCTTTCTCTAAAGGGCAGACATCGGCACAATAGGCTTGTTGATGAGAGATGGGACAACCTTTTCCGTTGTCTTTTTCGAATTCCTTTTCACCGGGTGTGAATCAGGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATAAAGGAGGTAGGGGTGCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCACCCTTAAAAGAGTGCGTAATAGCTCACTGATCGAGCGCTCTTGCGGAACTCATCTTCTAATTCATTTTTTTTTTCTACAAACCTAGGCACTTGACGCAACTTTTCAATGTTAACCTGCTTTACTTCAGGGAAGAGTGGATGATCTGCCAGCTCTTGCAGAAATTTGTCAAAGTTGTTGTTTGCGAAAGGCTATCAACGTAGACGTATATAGATATAGTGAGTGTGTGTGCAGGGTGTAGGTATACCACTTACAAGAAAGAACCCCAAGTCAGTAAAGTAGTTAACCAAACACAAGTAAGTAGTTCGGAATAAACGTTTCTCTGTGGAGAAGGGGAAATATCAATTTTTTCCTATAGAACGTCTACAAACAAGAGGATTTAATCGGAAATATCGACAGATTCCTGTGTGTGGAGTCCAAATAAATATGAAAATAAAAAAGATCCACTGTTCTAATTTAATCAGCCCCCGTCAATTCCTTTGAGTTTCATTCTTGCGAACGTACTCCCCAGGCGGGATACTTAACGCGTTAGCTACAGCACTGCACGGGTCGATACGCACAGCGCCTAGTATCCATCGTTTACGGCTAGGACTACTGGGGTATCTAATCCCATTCGCTCCCCTAGCTTTCGAGGCATTTTCGAGTGTTTGGATGCACGTGTTTTGTTCATATTCCTGCGCTGTTAAGAGAAAAATTGTCCCCAAGGCCACCGCTTGTTTCTTTCTTGGATATGCTCAGTCCGGGTATAGATGCCCCTGGAGTTTGATCCCCAAGAAAGAGGGAAATGGCTGTGATTCAATATGAAAAGGCCAGCACTCACTCTTCAGAAAATATCGAGATGCATGTAATAATCAAGGTTTTGATTCCAGAGTCAGATTGGGGAGACAACTCCTTCAAGGCTTTGACTTACATTCCGAGGAAGACCTGGGCGGATCATCACCCCTTCATTCTGGCTCTACTTCATTCGCTATTAACAAGACAGCCCACGACCAGAGGATTTCGGCGGAAAATGGATTCTTTTATATTCGCATGGCCGGATCAAGAACAGCTCCAGCCCTATCGATTAGTATTACGCAGAAGAAATCAATTATAGACACTAATATAATTAGATCTGCTCTTCATAGACAAACTTGGGATTTGCGATCCCAGGTAAGATCGGTTCAGGATCATGGGATCCTTTTCTATCAGATAGGAAGGGCTGTTGCACAAAATGTACTTCTAAATTCACTTTATTTCAACTATCAAAAAGTCACTTTCCAATATTAG

mRNA sequence

ATGCTGCCTACTCTGCCGAAAAAGGGGGCTGCTTTATTCCCTCACAAAATGCCTGTTCCACCATCTGGGCCCAGCAAGCAGCATAATTCTGTTCCGAGGCTGCGTTTCATTCCAGCAACAGTAGTATATGGTTCGAAGCGCCTTGGGGCGGCCCCTCAAATTGTGAATTTTTATTCACTTTATGATTTAATAACTCATAATCCGATCTCCCTAACTAAATATTTGCAACTTGACAATTTCAAACAGACTTTTCAAACCTGGTCTATCGTAGTCCCCATTGCACCGCTAGATAAGAGGCAAACAAAAAAGGGATCCGCCTCGAATCAAAACTCTTTCTCCTTAGCACAAGCACTAAGTCTTGGTAGGATTCTGACTTGCTGGCCCGTAAACCATTTCAGTGCAGGGCCCGGAAGAGTGGATGATCTGCCAGCTCTTGCAGAAATTTGTCAAAGTTGTTGTTTGCGAAAGGCTATCAACGTAGACGTATATAGATATAAACGTCTACAAACAAGAGGATTTAATCGGAAATATCGACAGATTCCTGTGTGCGGGATACTTAACGCGTTAGCTACAGCACTGCACGGGTCGATACGCACAGCGCCTAGTATCCATCGTTTACGGCTAGGACTACTGGGGTATCTAATCCCATTCGCTCCCCTAGCTTTCGAGGCATTTTCGAGTGTTTGGATGCACGTGTTTTGTTCATATTCCTGCGCTGTTAAGAGAAAAATTGTCCCCAAGGCCACCGCTTGTTTCTTTCTTGGATATGCTCAGTCCGGAAAATATCGAGATGCATGTAATAATCAAGGTTTTGATTCCAGAGTCAGATTGGGGAGACAACTCCTTCAAGGCTTTGACTTACATTCCGAGGAAGACCTGGGCGGATCATCACCCCTTCATTCTGGCTCTACTTCATTCGCTATTAACAAGACAGCCCACGACCAGAGGATTTCGGCGGAAAATGGATTCTTTTATATTCGCATGGCCGGATCAAGAACAGCTCCAGCCCTATCGATTAGTATTACGCAGAAGAAATCAATTATAGACACTAATATAATTAGATCTGCTCTTCATAGACAAACTTGGGATTTGCGATCCCAGGTAAGATCGGTTCAGGATCATGGGATCCTTTTCTATCAGATAGGAAGGGCTGTTGCACAAAATGTACTTCTAAATTCACTTTATTTCAACTATCAAAAAGTCACTTTCCAATATTAG

Coding sequence (CDS)

ATGCTGCCTACTCTGCCGAAAAAGGGGGCTGCTTTATTCCCTCACAAAATGCCTGTTCCACCATCTGGGCCCAGCAAGCAGCATAATTCTGTTCCGAGGCTGCGTTTCATTCCAGCAACAGTAGTATATGGTTCGAAGCGCCTTGGGGCGGCCCCTCAAATTGTGAATTTTTATTCACTTTATGATTTAATAACTCATAATCCGATCTCCCTAACTAAATATTTGCAACTTGACAATTTCAAACAGACTTTTCAAACCTGGTCTATCGTAGTCCCCATTGCACCGCTAGATAAGAGGCAAACAAAAAAGGGATCCGCCTCGAATCAAAACTCTTTCTCCTTAGCACAAGCACTAAGTCTTGGTAGGATTCTGACTTGCTGGCCCGTAAACCATTTCAGTGCAGGGCCCGGAAGAGTGGATGATCTGCCAGCTCTTGCAGAAATTTGTCAAAGTTGTTGTTTGCGAAAGGCTATCAACGTAGACGTATATAGATATAAACGTCTACAAACAAGAGGATTTAATCGGAAATATCGACAGATTCCTGTGTGCGGGATACTTAACGCGTTAGCTACAGCACTGCACGGGTCGATACGCACAGCGCCTAGTATCCATCGTTTACGGCTAGGACTACTGGGGTATCTAATCCCATTCGCTCCCCTAGCTTTCGAGGCATTTTCGAGTGTTTGGATGCACGTGTTTTGTTCATATTCCTGCGCTGTTAAGAGAAAAATTGTCCCCAAGGCCACCGCTTGTTTCTTTCTTGGATATGCTCAGTCCGGAAAATATCGAGATGCATGTAATAATCAAGGTTTTGATTCCAGAGTCAGATTGGGGAGACAACTCCTTCAAGGCTTTGACTTACATTCCGAGGAAGACCTGGGCGGATCATCACCCCTTCATTCTGGCTCTACTTCATTCGCTATTAACAAGACAGCCCACGACCAGAGGATTTCGGCGGAAAATGGATTCTTTTATATTCGCATGGCCGGATCAAGAACAGCTCCAGCCCTATCGATTAGTATTACGCAGAAGAAATCAATTATAGACACTAATATAATTAGATCTGCTCTTCATAGACAAACTTGGGATTTGCGATCCCAGGTAAGATCGGTTCAGGATCATGGGATCCTTTTCTATCAGATAGGAAGGGCTGTTGCACAAAATGTACTTCTAAATTCACTTTATTTCAACTATCAAAAAGTCACTTTCCAATATTAG

Protein sequence

MLPTLPKKGAALFPHKMPVPPSGPSKQHNSVPRLRFIPATVVYGSKRLGAAPQIVNFYSLYDLITHNPISLTKYLQLDNFKQTFQTWSIVVPIAPLDKRQTKKGSASNQNSFSLAQALSLGRILTCWPVNHFSAGPGRVDDLPALAEICQSCCLRKAINVDVYRYKRLQTRGFNRKYRQIPVCGILNALATALHGSIRTAPSIHRLRLGLLGYLIPFAPLAFEAFSSVWMHVFCSYSCAVKRKIVPKATACFFLGYAQSGKYRDACNNQGFDSRVRLGRQLLQGFDLHSEEDLGGSSPLHSGSTSFAINKTAHDQRISAENGFFYIRMAGSRTAPALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLNSLYFNYQKVTFQY
Homology
[Close]
BLAST of Cla97C11G214070 vs. NCBI nr
Match: ANY93419.1 (Ycf2 (chloroplast) [Hagenia abyssinica] >ANY93447.1 Ycf2 (chloroplast) [Hagenia abyssinica] >ARD04196.1 hypothetical protein RF2 (plastid) [Hagenia abyssinica])

HSP 1 Score: 114.4 bits (285), Expect = 9.1e-22
Identity = 62/86 (72.09%), Postives = 69/86 (80.23%), Query Frame = 0 

Query: 314  DQRISAENGFFYIRMAG------SRTAPALSISITQKKSIIDTNIIRSALHRQTWDLRSQ 373
            ++++   NGF YI M        + T  ALSISITQ KSIIDTNIIRSALHRQTWDLRSQ
Sbjct: 1824 EKKMFYTNGFGYITMGSNIRDLVALTNEALSISITQNKSIIDTNIIRSALHRQTWDLRSQ 1883

Query: 374  VRSVQDHGILFYQIGRAVAQNVLLNS 394
            VRSVQDHGILFYQIGRAVAQNVLL++
Sbjct: 1884 VRSVQDHGILFYQIGRAVAQNVLLSN 1909

[Close]
BLAST of Cla97C11G214070 vs. NCBI nr
Match: ARC96694.1 (hypothetical protein RF2 (plastid) [Leucosidea sericea])

HSP 1 Score: 114.4 bits (285), Expect = 9.1e-22
Identity = 62/86 (72.09%), Postives = 69/86 (80.23%), Query Frame = 0 

Query: 314  DQRISAENGFFYIRMAG------SRTAPALSISITQKKSIIDTNIIRSALHRQTWDLRSQ 373
            ++++   NGF YI M        + T  ALSISITQ KSIIDTNIIRSALHRQTWDLRSQ
Sbjct: 1824 EKKMFYTNGFGYITMGSNIRDLVALTNEALSISITQNKSIIDTNIIRSALHRQTWDLRSQ 1883

Query: 374  VRSVQDHGILFYQIGRAVAQNVLLNS 394
            VRSVQDHGILFYQIGRAVAQNVLL++
Sbjct: 1884 VRSVQDHGILFYQIGRAVAQNVLLSN 1909

[Close]
BLAST of Cla97C11G214070 vs. NCBI nr
Match: ARC97701.1 (hypothetical protein RF2 (plastid) [Agrimonia pilosa])

HSP 1 Score: 114.4 bits (285), Expect = 9.1e-22
Identity = 62/86 (72.09%), Postives = 69/86 (80.23%), Query Frame = 0 

Query: 314  DQRISAENGFFYIRMAG------SRTAPALSISITQKKSIIDTNIIRSALHRQTWDLRSQ 373
            ++++   NGF YI M        + T  ALSISITQ KSIIDTNIIRSALHRQTWDLRSQ
Sbjct: 1824 EKKMFYTNGFGYITMGSNIRDLVALTNEALSISITQNKSIIDTNIIRSALHRQTWDLRSQ 1883

Query: 374  VRSVQDHGILFYQIGRAVAQNVLLNS 394
            VRSVQDHGILFYQIGRAVAQNVLL++
Sbjct: 1884 VRSVQDHGILFYQIGRAVAQNVLLSN 1909

[Close]
BLAST of Cla97C11G214070 vs. NCBI nr
Match: AEK78231.1 (hypothetical chloroplast RF2 (plastid) [Mirabilis jalapa])

HSP 1 Score: 114.0 bits (284), Expect = 1.2e-21
Identity = 62/86 (72.09%), Postives = 69/86 (80.23%), Query Frame = 0 

Query: 314  DQRISAENGFFYIRMAG------SRTAPALSISITQKKSIIDTNIIRSALHRQTWDLRSQ 373
            ++++   NGF +I M        S T  ALSISITQKKSIIDTN IRSALHRQTWDLRSQ
Sbjct: 1815 EKKMFHTNGFGFITMGSNVRDLVSLTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQ 1874

Query: 374  VRSVQDHGILFYQIGRAVAQNVLLNS 394
            VRSVQDHGILFYQIGRAVAQNVLL++
Sbjct: 1875 VRSVQDHGILFYQIGRAVAQNVLLSN 1900

[Close]
BLAST of Cla97C11G214070 vs. NCBI nr
Match: YP_009256370.1 (hypothetical chloroplast RF21 (chloroplast) [Ziziphus jujuba] >YP_009256388.1 hypothetical chloroplast RF21 (chloroplast) [Ziziphus jujuba] >AND82363.1 hypothetical chloroplast RF21 (chloroplast) [Ziziphus jujuba] >AND82382.1 hypothetical chloroplast RF21 (chloroplast) [Ziziphus jujuba])

HSP 1 Score: 114.0 bits (284), Expect = 1.2e-21
Identity = 63/86 (73.26%), Postives = 69/86 (80.23%), Query Frame = 0 

Query: 314  DQRISAENGFFYIRMAG------SRTAPALSISITQKKSIIDTNIIRSALHRQTWDLRSQ 373
            ++++   NGF  I M        + T  ALSISITQKKSIIDTNIIRSALHRQTWDLRSQ
Sbjct: 1851 EKKMFHTNGFGSITMGSNVRDLVALTNEALSISITQKKSIIDTNIIRSALHRQTWDLRSQ 1910

Query: 374  VRSVQDHGILFYQIGRAVAQNVLLNS 394
            VRSVQDHGILFYQIGRAVAQNVLL+S
Sbjct: 1911 VRSVQDHGILFYQIGRAVAQNVLLSS 1936

[Close]
BLAST of Cla97C11G214070 vs. TrEMBL
Match: tr|A0A1B2FKT2|A0A1B2FKT2_9ROSA (Protein Ycf2 OS=Hagenia abyssinica OX=57921 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 6.0e-22
Identity = 62/86 (72.09%), Postives = 69/86 (80.23%), Query Frame = 0 

Query: 314  DQRISAENGFFYIRMAG------SRTAPALSISITQKKSIIDTNIIRSALHRQTWDLRSQ 373
            ++++   NGF YI M        + T  ALSISITQ KSIIDTNIIRSALHRQTWDLRSQ
Sbjct: 1824 EKKMFYTNGFGYITMGSNIRDLVALTNEALSISITQNKSIIDTNIIRSALHRQTWDLRSQ 1883

Query: 374  VRSVQDHGILFYQIGRAVAQNVLLNS 394
            VRSVQDHGILFYQIGRAVAQNVLL++
Sbjct: 1884 VRSVQDHGILFYQIGRAVAQNVLLSN 1909

[Close]
BLAST of Cla97C11G214070 vs. TrEMBL
Match: tr|A0A1V0IMK5|A0A1V0IMK5_9ROSA (Protein Ycf2 OS=Agrimonia pilosa OX=74656 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 6.0e-22
Identity = 62/86 (72.09%), Postives = 69/86 (80.23%), Query Frame = 0 

Query: 314  DQRISAENGFFYIRMAG------SRTAPALSISITQKKSIIDTNIIRSALHRQTWDLRSQ 373
            ++++   NGF YI M        + T  ALSISITQ KSIIDTNIIRSALHRQTWDLRSQ
Sbjct: 1824 EKKMFYTNGFGYITMGSNIRDLVALTNEALSISITQNKSIIDTNIIRSALHRQTWDLRSQ 1883

Query: 374  VRSVQDHGILFYQIGRAVAQNVLLNS 394
            VRSVQDHGILFYQIGRAVAQNVLL++
Sbjct: 1884 VRSVQDHGILFYQIGRAVAQNVLLSN 1909

[Close]
BLAST of Cla97C11G214070 vs. TrEMBL
Match: tr|A0A1V0IJR6|A0A1V0IJR6_9ROSA (Protein Ycf2 OS=Leucosidea sericea OX=137445 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 6.0e-22
Identity = 62/86 (72.09%), Postives = 69/86 (80.23%), Query Frame = 0 

Query: 314  DQRISAENGFFYIRMAG------SRTAPALSISITQKKSIIDTNIIRSALHRQTWDLRSQ 373
            ++++   NGF YI M        + T  ALSISITQ KSIIDTNIIRSALHRQTWDLRSQ
Sbjct: 1824 EKKMFYTNGFGYITMGSNIRDLVALTNEALSISITQNKSIIDTNIIRSALHRQTWDLRSQ 1883

Query: 374  VRSVQDHGILFYQIGRAVAQNVLLNS 394
            VRSVQDHGILFYQIGRAVAQNVLL++
Sbjct: 1884 VRSVQDHGILFYQIGRAVAQNVLLSN 1909

[Close]
BLAST of Cla97C11G214070 vs. TrEMBL
Match: tr|A0A2K8GMT6|A0A2K8GMT6_9ROSA (Protein Ycf2 OS=Ziziphus spina-christi OX=264981 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 7.9e-22
Identity = 63/86 (73.26%), Postives = 69/86 (80.23%), Query Frame = 0 

Query: 314  DQRISAENGFFYIRMAG------SRTAPALSISITQKKSIIDTNIIRSALHRQTWDLRSQ 373
            ++++   NGF  I M        + T  ALSISITQKKSIIDTNIIRSALHRQTWDLRSQ
Sbjct: 1839 EKKMFHTNGFGSITMGSNVRDLVALTNEALSISITQKKSIIDTNIIRSALHRQTWDLRSQ 1898

Query: 374  VRSVQDHGILFYQIGRAVAQNVLLNS 394
            VRSVQDHGILFYQIGRAVAQNVLL+S
Sbjct: 1899 VRSVQDHGILFYQIGRAVAQNVLLSS 1924

[Close]
BLAST of Cla97C11G214070 vs. TrEMBL
Match: tr|A0A2K8GMK8|A0A2K8GMK8_9ROSA (Protein Ycf2 OS=Ziziphus mauritiana OX=157914 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 7.9e-22
Identity = 63/86 (73.26%), Postives = 69/86 (80.23%), Query Frame = 0 

Query: 314  DQRISAENGFFYIRMAG------SRTAPALSISITQKKSIIDTNIIRSALHRQTWDLRSQ 373
            ++++   NGF  I M        + T  ALSISITQKKSIIDTNIIRSALHRQTWDLRSQ
Sbjct: 1839 EKKMFHTNGFGSITMGSNVRDLVALTNEALSISITQKKSIIDTNIIRSALHRQTWDLRSQ 1898

Query: 374  VRSVQDHGILFYQIGRAVAQNVLLNS 394
            VRSVQDHGILFYQIGRAVAQNVLL+S
Sbjct: 1899 VRSVQDHGILFYQIGRAVAQNVLLSS 1924

[Close]
BLAST of Cla97C11G214070 vs. Swiss-Prot
Match: sp|Q06GT4|YCF2_DRIGR (Protein Ycf2 OS=Drimys granadensis OX=224735 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.1e-23
Identity = 61/86 (70.93%), Postives = 69/86 (80.23%), Query Frame = 0 

Query: 314  DQRISAENGFFYIRMAGSR------TAPALSISITQKKSIIDTNIIRSALHRQTWDLRSQ 373
            ++++S  NGF  I M  +       T  ALSISITQKKSIIDTN IRSALHRQTWDLRS+
Sbjct: 1837 EKKMSHTNGFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSE 1896

Query: 374  VRSVQDHGILFYQIGRAVAQNVLLNS 394
            VRSVQDHGILFYQIGRAVAQNVLL++
Sbjct: 1897 VRSVQDHGILFYQIGRAVAQNVLLSN 1922

[Close]
BLAST of Cla97C11G214070 vs. Swiss-Prot
Match: sp|Q09FY5|YCF2_PLAOC (Protein Ycf2 OS=Platanus occidentalis OX=4403 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.1e-23
Identity = 62/86 (72.09%), Postives = 68/86 (79.07%), Query Frame = 0 

Query: 314  DQRISAENGFFYIRMAGSR------TAPALSISITQKKSIIDTNIIRSALHRQTWDLRSQ 373
            +++I   NGF  I M  +       T  ALSISITQKKSIIDTN IRSALHRQTWDLRSQ
Sbjct: 1830 EKKIFHTNGFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQ 1889

Query: 374  VRSVQDHGILFYQIGRAVAQNVLLNS 394
            VRSVQDHGILFYQIGRAVAQNVLL++
Sbjct: 1890 VRSVQDHGILFYQIGRAVAQNVLLSN 1915

[Close]
BLAST of Cla97C11G214070 vs. Swiss-Prot
Match: sp|A4QKX4|YCF2A_CRUWA (Protein Ycf2 A OS=Crucihimalaya wallichii OX=78192 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.9e-23
Identity = 61/86 (70.93%), Postives = 68/86 (79.07%), Query Frame = 0 

Query: 314  DQRISAENGFFYIRMAGSR------TAPALSISITQKKSIIDTNIIRSALHRQTWDLRSQ 373
            ++++   NGF  I M  S       T  ALSISITQKKSIIDTN IRSALHRQTWDLRSQ
Sbjct: 1837 EKKMFHTNGFESITMGSSARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQ 1896

Query: 374  VRSVQDHGILFYQIGRAVAQNVLLNS 394
            VRSVQDHGILFYQIGRAVAQNVL+++
Sbjct: 1897 VRSVQDHGILFYQIGRAVAQNVLISN 1922

[Close]
BLAST of Cla97C11G214070 vs. Swiss-Prot
Match: sp|A4QKZ7|YCF2B_CRUWA (Protein Ycf2 B OS=Crucihimalaya wallichii OX=78192 GN=ycf2-B PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.9e-23
Identity = 61/86 (70.93%), Postives = 68/86 (79.07%), Query Frame = 0 

Query: 314  DQRISAENGFFYIRMAGSR------TAPALSISITQKKSIIDTNIIRSALHRQTWDLRSQ 373
            ++++   NGF  I M  S       T  ALSISITQKKSIIDTN IRSALHRQTWDLRSQ
Sbjct: 1837 EKKMFHTNGFESITMGSSARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQ 1896

Query: 374  VRSVQDHGILFYQIGRAVAQNVLLNS 394
            VRSVQDHGILFYQIGRAVAQNVL+++
Sbjct: 1897 VRSVQDHGILFYQIGRAVAQNVLISN 1922

[Close]
BLAST of Cla97C11G214070 vs. Swiss-Prot
Match: sp|A4QJF8|YCF2_AETCO (Protein Ycf2 OS=Aethionema cordifolium OX=434059 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.9e-23
Identity = 61/86 (70.93%), Postives = 68/86 (79.07%), Query Frame = 0 

Query: 314  DQRISAENGFFYIRMAGSR------TAPALSISITQKKSIIDTNIIRSALHRQTWDLRSQ 373
            ++++   NGF  I M  S       T  ALSISITQKKSIIDTN IRSALHRQTWDLRSQ
Sbjct: 1842 EKKMFHTNGFESITMGSSARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQ 1901

Query: 374  VRSVQDHGILFYQIGRAVAQNVLLNS 394
            VRSVQDHGILFYQIGRAVAQNVL+++
Sbjct: 1902 VRSVQDHGILFYQIGRAVAQNVLISN 1927

[Close]
BLAST of Cla97C11G214070 vs. TAIR10
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core)

HSP 1 Score: 111.7 bits (278), Expect = 1.1e-24
Identity = 61/86 (70.93%), Postives = 68/86 (79.07%), Query Frame = 0 

Query: 314  DQRISAENGFFYIRMAGSR------TAPALSISITQKKSIIDTNIIRSALHRQTWDLRSQ 373
            ++++   NGF  I M  S       T  ALSISITQKKSIIDTN IRSALHRQTWDLRSQ
Sbjct: 1838 EKKMFHTNGFESITMGSSARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQ 1897

Query: 374  VRSVQDHGILFYQIGRAVAQNVLLNS 394
            VRSVQDHGILFYQIGRAVAQNVL+++
Sbjct: 1898 VRSVQDHGILFYQIGRAVAQNVLISN 1923

[Close]
BLAST of Cla97C11G214070 vs. TAIR10
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core)

HSP 1 Score: 111.7 bits (278), Expect = 1.1e-24
Identity = 61/86 (70.93%), Postives = 68/86 (79.07%), Query Frame = 0 

Query: 314  DQRISAENGFFYIRMAGSR------TAPALSISITQKKSIIDTNIIRSALHRQTWDLRSQ 373
            ++++   NGF  I M  S       T  ALSISITQKKSIIDTN IRSALHRQTWDLRSQ
Sbjct: 1838 EKKMFHTNGFESITMGSSARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQ 1897

Query: 374  VRSVQDHGILFYQIGRAVAQNVLLNS 394
            VRSVQDHGILFYQIGRAVAQNVL+++
Sbjct: 1898 VRSVQDHGILFYQIGRAVAQNVLISN 1923

[Close]
BLAST of Cla97C11G214070 vs. TAIR10
Match: AT2G07722.1 (unknown protein)

HSP 1 Score: 65.5 bits (158), Expect = 8.8e-11
Identity = 30/37 (81.08%), Postives = 32/37 (86.49%), Query Frame = 0 

Query: 1   MLPTLPKKGAALFPHKMPVPPSGPSKQHNSVPRLRFI 38
           MLPTLP+KGAA FP KMPVPPSGPSKQHNS PR  F+
Sbjct: 98  MLPTLPQKGAAFFPPKMPVPPSGPSKQHNSAPRSDFV 134

[Close]
BLAST of Cla97C11G214070 vs. TAIR10
Match: ATMG00170.1 (hypothetical protein)

HSP 1 Score: 65.5 bits (158), Expect = 8.8e-11
Identity = 30/37 (81.08%), Postives = 32/37 (86.49%), Query Frame = 0 

Query: 1   MLPTLPKKGAALFPHKMPVPPSGPSKQHNSVPRLRFI 38
           MLPTLP+KGAA FP KMPVPPSGPSKQHNS PR  F+
Sbjct: 98  MLPTLPQKGAAFFPPKMPVPPSGPSKQHNSAPRSDFV 134

[Close]
BLAST of Cla97C11G214070 vs. TAIR10
Match: ATMG00620.1 (hypothetical protein)

HSP 1 Score: 65.5 bits (158), Expect = 8.8e-11
Identity = 30/37 (81.08%), Postives = 32/37 (86.49%), Query Frame = 0 

Query: 1   MLPTLPKKGAALFPHKMPVPPSGPSKQHNSVPRLRFI 38
           MLPTLP+KGAA FP KMPVPPSGPSKQHNS PR  F+
Sbjct: 98  MLPTLPQKGAAFFPPKMPVPPSGPSKQHNSAPRSDFV 134

The following BLAST results are available for this feature:
BLAST of Cla97C11G214070 vs. NCBI nr
Match NameE-valueIdentityDescription
ANY93419.19.1e-2272.09Ycf2 (chloroplast) [Hagenia abyssinica] >ANY93447.1 Ycf2 (chloroplast) [Hagenia ... [more]
ARC96694.19.1e-2272.09hypothetical protein RF2 (plastid) [Leucosidea sericea][more]
ARC97701.19.1e-2272.09hypothetical protein RF2 (plastid) [Agrimonia pilosa][more]
AEK78231.11.2e-2172.09hypothetical chloroplast RF2 (plastid) [Mirabilis jalapa][more]
YP_009256370.11.2e-2173.26hypothetical chloroplast RF21 (chloroplast) [Ziziphus jujuba] >YP_009256388.1 hy... [more]
BLAST of Cla97C11G214070 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1B2FKT2|A0A1B2FKT2_9ROSA6.0e-2272.09Protein Ycf2 OS=Hagenia abyssinica OX=57921 GN=ycf2 PE=3 SV=1[more]
tr|A0A1V0IMK5|A0A1V0IMK5_9ROSA6.0e-2272.09Protein Ycf2 OS=Agrimonia pilosa OX=74656 GN=ycf2 PE=3 SV=1[more]
tr|A0A1V0IJR6|A0A1V0IJR6_9ROSA6.0e-2272.09Protein Ycf2 OS=Leucosidea sericea OX=137445 GN=ycf2 PE=3 SV=1[more]
tr|A0A2K8GMT6|A0A2K8GMT6_9ROSA7.9e-2273.26Protein Ycf2 OS=Ziziphus spina-christi OX=264981 GN=ycf2 PE=3 SV=1[more]
tr|A0A2K8GMK8|A0A2K8GMK8_9ROSA7.9e-2273.26Protein Ycf2 OS=Ziziphus mauritiana OX=157914 GN=ycf2 PE=3 SV=1[more]
BLAST of Cla97C11G214070 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q06GT4|YCF2_DRIGR1.1e-2370.93Protein Ycf2 OS=Drimys granadensis OX=224735 GN=ycf2-A PE=3 SV=1[more]
sp|Q09FY5|YCF2_PLAOC1.1e-2372.09Protein Ycf2 OS=Platanus occidentalis OX=4403 GN=ycf2-A PE=3 SV=1[more]
sp|A4QKX4|YCF2A_CRUWA1.9e-2370.93Protein Ycf2 A OS=Crucihimalaya wallichii OX=78192 GN=ycf2-A PE=3 SV=1[more]
sp|A4QKZ7|YCF2B_CRUWA1.9e-2370.93Protein Ycf2 B OS=Crucihimalaya wallichii OX=78192 GN=ycf2-B PE=3 SV=1[more]
sp|A4QJF8|YCF2_AETCO1.9e-2370.93Protein Ycf2 OS=Aethionema cordifolium OX=434059 GN=ycf2-A PE=3 SV=1[more]
BLAST of Cla97C11G214070 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00860.11.1e-2470.93Chloroplast Ycf2;ATPase, AAA type, core[more]
ATCG01280.11.1e-2470.93Chloroplast Ycf2;ATPase, AAA type, core[more]
AT2G07722.18.8e-1181.08unknown protein[more]
ATMG00170.18.8e-1181.08hypothetical protein[more]
ATMG00620.18.8e-1181.08hypothetical protein[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
Vocabulary: Cellular Component
TermDefinition
GO:0009507chloroplast
Vocabulary: INTERPRO
TermDefinition
IPR008543Uncharacterised_Ycf2
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0009507 chloroplast
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0009536 plastid
molecular_function GO:0005524 ATP binding
molecular_function GO:0000166 nucleotide binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C11G214070.1Cla97C11G214070.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008543Uncharacterised protein family Ycf2PANTHERPTHR33078FAMILY NOT NAMEDcoord: 333..393

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C11G214070Watermelon (Charleston Gray)wcgwmbB065