Cla97C11G213370 (gene) Watermelon (97103) v2

Overview
NameCla97C11G213370
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionDNA-directed RNA polymerase subunit beta''
LocationCla97Chr11 : 6755089 .. 6761714 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTCTCACTCACTGGGAGACGACTCTGAAAGTTCTCAGAATCCTTCTCTCAGAAGAGCTCGAAATGGAGGCTGGTTATGGTTAGGGAGAATTTGTGCAGAGCTTTCGCCTCTTGAACTCGTTTCTCTCCTCCCTTGAATGGAGAAGCTTTGGGCTATTTATAGGCGTCGAAAAGTTGAAACTCATGATGACCTAACACCTTTACATTAAATTCCCTTGCATATTGACATGACAGCTTTTGCCCAGGCATCTGTATCTACTTTTTCTCAACGCATGGTCTCAACGTCTAGTCTCGACGCATGGGTTTCCACTTGTTCTCGCAGTAGCTTCGTCTCTTAGTACTTGGGTTATTTGTGCTTCTTTTCTTCTTAATCTTGCATTAAGAACAGAAAATCTCATAATTTTTCAGGTATTTTCTTTTGTAAATAGTGTCAAAACATGGTAATACATTTTACATAATTCAACTACTAAAATCATGCGTTTAGCTCTAAAGTTACTCTAATTAATTCAAATAGTGACTATAATAACTTGTATTTCTACAAGTTATCAGAAGACACGTTAAGCTTCTTAACCATTTTTTTGCTGAAAAACTCACATATTCAAAGCTCTCCAAAATAGTGTGTTCTTCACAAATTTGCTCCAAATTCAACTCATTTTGGATCCCACAATTCATTCTAAGGCTAGAGAATAACAAGGAAGACTCTTGTGGTGGTCCACGAAGTGTTCGTGATAAAAAATTCAAAGGAATTTGATTCATTTTTTAGCTACAACAAGTATTCTTTATCTGTTTTTCGGTTTTAGAACAAGCATGTTTAACCTTCAAAATTGATGTAATTAGAGTGTTTTAGATCCTAATTGTTTCTGTTTTTATGTTGCTTACTCCTTTAATGGAAGCCTGTTTAGAGGTTAATGATGCGTTTTATACGCCTAGGTGGGCAAGGCGTGGGTGTGAGGTTGCACGCAAAGAGGGCGTGCAGGTGGCTGTGGCATGCAAGGCTTGAGTGCCAGAGTGTTGGGGCACTACCCAGTGGGACGCCAAATGCACGCACAATCAATGCCAGGGGGACGCTTAAAGCATTGCATATGTGGCTAATTGATGCCTAGTGAGCACACCTATGCCTGTGCGTCTGTGTAAGCGAGTGCCTGTGTGAGGGGGCAGCCAAGGCTATGCGTGCGTGTGTTTGTGCCTGCATCCAGCGAGTATGTTTGAGTACTTGTGCCCACATCCAACAAGGTTGCATGCCTAACTCCTTTTCATTTCACTTAAGGTATTAGCCAATGTATTATGCATTGATGGGTTGATTCAAGTATTAATTTAACCTAAAGACAAGGATGGTTTAAGTTAAGGTTTAGCGAGATTTAAAAGAGTCTAATCAAAGGAAGTAAACTTATTTTCAGGACAAACAAGTTAGATTTTTAATAGAGATAGTAGATGAAGAGAACCGAGAGGAAGGGAACTGGAGAGGCTTAATGCAGTAAATGAACTGCTGATTAATTTCTTACTTACAAATTACAATGCCCAAGAACCTTCCTATAAATACACATTAAATAAGATAAATCTAGGCTAATGATGGGATTAGGTATCTTTAGATATTGCTACCTAATACACAATAAATGAAGTGGAAACTTGCAACAAATAAATATGAGCAACAGTAAGTGAAATAATAGTTAATAGTAACAGCAGATTTTATTATGTCATAACATCCCCCTGCAAACGAGACGTAGGGTGACACCAGAGTCCTAGTTTGTTTCTTAGAGTCTGGAACATCTGTGAGGATAACGATTTGGTCAAAGTGTCAGCTAGCTGTTTTTGAGAGCGAATGTGACAAATTTCAAGCTGCTTGGAAATAACTTGATCATGAATGAAATGAGCATCAATATCTTTGTGTTTAGTTCGAGCATGAAAAACAGGATTGTGTGCTAGAGCAGCTACAGAGAGGTTGTCACACCAAAGGAGAGGAGTGAAGGTGATGGGAATGCCAATGTCTTAAAGTAACTGTCGAAGCCATAGCATTTTGCAAGCCGTAAGAGATAGAGCACGATATTCCGATTCTGTACTTGATTGAGCCACCACTTGTTGTTTCTTGGAGCTCCATGAGATAAGAGAGTTACCAAGAAAGATACAATAACCATTGACAAATTTTCGGTCATCAGGAGATGACGCCCAATCGGCATCAGAATATCCAGTGAGGGAAAATGTCGGTGCAGGAGATAAAAACAAACCAAGATTACTTGTTCCCTGGAGATAGCATAGAAGTCGTTTAAGAGCACGCCAGTGAAGAAAAGTTGGTTGTTGATTGAATTGACTGAGTTTATTGACGGCGAATGCAATGTCTGGTCGAGTGTGTTGAAGGTATTAAAGAGAACCGATGGCGCTGCGATAGATTTGAGGATCATGCATGGGATCACCATCAAATTGAGACAGTTGTTTGCTAGTGATCATCAGGGTTGGTGTTGGTTTGATGTGTTGTAGATTGAGTGGAAGGAGCAGATCTTGTATGTATTTGGTTTGGGAAAGAAGAAGACCATGGTCAGTGAAAGTAGCTTGAATGCCAAGAAAATAGTGGAGTAGACCAAGATCTTTGACAGCAAAGGTGGCTTGGAGTTTGGAAACAATGGAGTTGAGTAGAGATGTGGATGAACTGGTGAGGATAATATCATCTACATAAACAAGTAATAGAATGGTGCCCTTTGGAGATTTAAAGATAAATAGAGACAGATCAACCTTGGACTAAGTGAAGTTACAACGCAGAAGGAAAGTGTGAAGTTCTTCATACCATGCCTGGGGTGCTTGCTTAAGACCATAGAGGGCCTTATGGAGTCGACATACATGATGAGGGAACTTGGGATGAACATAGCCTTGGGGTTGTGAGATGTAGACTTCTTCCTTGAGCGTTCCATGAAGAAAAGTGTTACATCAAGCTGTCGAATGGACCAACGATGTGTGAGTGTAAGGGTAAGAAAAACCTGAATAGAGGTAGGTTTAATGACTGGACTATAAGTCTCTCCATAGTCAATGCCGGGAGTTTGAAGGTAGCCTTTGGCTACCAGTCGTGCTTTATACCATTGAATGTGACCAGCAGAGTCTCTCTTGATCTTGTACACTCACTTAGCAGGAACAATGTGTTGATTAGGGTTAGGAGGGACCAAGTCCCATGTATGGTTTGTTGTGAGAGCATGGAATTCATGATCCATGGCCTGTCTCCATTGTTTAGAAGAAATGACTTCCTTAAAAAGATATGGTTCTAATTAGGATCAGTCTTGCTATGTTTGTAGTTGTGCCAAGTAGCCATATGGCTGTTTTGGTTTGAAAATTCCTGCCTTAGCCCAAGTGTTCATGGGATGGGTATTAATGGCTGTTGAAATGGTGGTGGGAAATGTGGAGGATGGTGGATCGGGGGTTGTTGAAGTAGATGTATTGGGAGAGGTGGGGGAACTTGGAGAGTTAAGTTGCGTTGTAGGTGATTCGGTTGATGGTCTGGTTTGATCACAATAGTTGTCTATATTGACTGGTGGATTGCAAGGATGATGGAACGGTGTTGTTATGTTTCAAATTGGTATCCAAGAAATGACTGAGTTGGAGTTTGTGATATTCTCTAATTTCTTGAAGATGGATGAGTATGGAAATTCTTTTTTCATTTAAATAGACATGTCATGAAGTGAATACTTTCCCTGTTGGAGATAGGCACTGGGACCCCTTGTGACAGTGACTATACCCAATGAACACACATTTTGTGGTATAAAGTCAAATTTGTGTTGTTTGTACAGTCGTAGAGAGGGAAAACAAGCAGACCCAAAAGTCCTAAGCCATGTATAATCAGGAGAATGTCCCTTAAGAATATCAAATGGACATGCATTGTTGATGACACTCGAGGGCATTCTATTTATAAGGTATGCAGCTGTATGAAAGGCCTCGCACCAAAGATTTAATGGCATTTTTGCTTGAGCAAGGAATGTGAGGCCAATTTCAACAATGTGACAATGTTTACGTTCCACTCGACCATTTTGAGGAGAAGTATAAGGGCATGTAATTTGAACTTCAATTCCCTGTTGGTGTGCAAATTCAGTGATTGGTTTAAATTCTCCACCTCCATCACACCTTAGAGTTTTAATTTTTGATGAATATAGGTTCTCGATAAGGCTTTTAAACTGTTTGAACACCGTGGTTGTATCTCCTTTAGTTCGAAGTGGATAAATCCAAATAAATCAACTGTAATCATCCACAAATGCTAATAGTACCGGTACCCACTGGTAGATAGAATAAGGGCTAGTCCCCACAAATCAATGTGTATAAGATCAAGTTTTTTGTTGGCTCGAGAGTGAGATCTTTGAAGTGATTGTCTACGCACCTTTCCAAATTTACAAGCCTCACAAAAATCATCCTTGTCATTGCTGTTAATAGGGATATTGCAAGATTGTAAGACTTGATTTATAATTCTAGAGGAAGGGTGACCCAATCTCTGGTGCCACAGATCCTTAGTACAAAAATTAGAGGATTTTTCAGTAGCCAAGTCTTCAAAAGTTTGAGGATGAGTGTTGGTAGCTTCTCTGAGAAAGACTACTCGAGCAGCATCCTTATTGTCTTCACTAAAAGAGGCTTTGTTTAGAGTTGCTTCCAAATGATAAAGTCCACGTTCAAGCTTCCCGATCAAGCATGTTTCCTTGGACTTATTTTCCTTTATTAAATAGAAGTTATTGTCAAATTCCACAGTTACTTCATTATCTTGAGATGGCTTTGAAATGCTAATGAGGTTCTTTTTCATGCGAGGAACATAGAGAACATCTTTCAAGTTTATGGGTAGTGTTGTCCAAAATAATTTAGCATTTCCATAAGTAACGATGGGAACTTTAGTTCCATCACCAATAATAATAGTAGTGGAATTTGGATACGTACCCTTCAAAGATAGTCGTTGTAAATTGGTGGTGATGTGGTTTGTTGCTCCGCTGTCCAAATACCAGGTAGAGTCATCAACGGTTTCTGGATATACCATAAGAGCTATTGGGGAGTTGTTTTTCTTCTTATCTGAAGAGGTGGCATTGGCTTCATCATTTTTGTCATAACGTGAGTAACATACATCAGCAGCATGACCATATTTTCCACATATTTGACAAGTTGGCTTGTTGGGCGGTGGGTATGGTGAGTAACGGTTTCTTCCTCTTCCTCTACTGTGTCCTATATTTTGATTGTTGCTTCTATTGGACTGTGGCCAATTGTGACTCTTTCTCTTATCTTCAGAAACAATGTTGGCAGAAGGTTGGTGTAAGTTTAAACTTCCTTTTAGTTCTTGAAGCTTCTTATGTCTCTATTCATAGGAAAGGAGTTCATATTGAATTTTGTTCCACATGAGATCTTGGCTTGGAATCACACAAAAAATGGGATTGTATTCTTCGTCAAGTCCAACGAATACATGAGAGGTGAAGCTCATGAACTCCATTGGTGATCCAGCTAACAGTAGGTTGCCATAATACTTTTTCATCACAGCTAGGTATTCCTCCATCTTCAAGCTTCCTTTTCTCGTTTGTTGCATCATTTGTCAGTAGTAGTCTTCTTGAGATCGTGACTGAATCCCAAAGTATTCTTGTATGGCATCCCACAAAAGTTTGGCTTCATCGTAACCCATTACGTGAGCTGCTACTTCAGAAGTCATTGAGTTGTACAACCAGCCGACTAGAAGTTGATCAGCTGCCAGCCAAATATCGTGCTGGGGATTAGGAAGAACAAGTCCTTAAGGTTCTTTTTCACTTGGTGGGATGATGATAGAGTGCTCTGGTGCTGGTGTTTTTCTAGTAAGATGACCTTCCAGCTTGTAGCTCCTTAGAATAGGAAGAACAATGTTCTGCCAGAGCAGGAAGTTGCCTCTATCAAGTTTGATAGAGGTCACTTGATTCAGTAGATTAGTGAAGGAGAGGTTGCCCATTGGGCAGGTATCAAACCTTACCTGATATTTTTGAATTACTGGAGCCGAGTCGCTGCTGGTAGAGGAGTTTCTTTAAGTTGAGGAAAGAGTGGCCATCTCTGTTACTTCACCTTCTGTTTTGTTGGTAGTTTGTCAAGGATTAAAGAGGCTTTCAGCCATAATGAAAGCTCTGCTACCAAATTAGATTTTTAACAGAGACAGCAGAGAACCGAGAGGAAGGGAATTGGAGAGGCTTAATGCAGTAATGAACTGCTGAATTAATTTCTTACTTACAAATTACAATGCCCAAGAACCTTCCCATAATTATCACCATAATTATTGTGAAGAAAGACCTAAAAGAATTAGCCTTGGACAGTTTTTTTTTGAAAATGTATGTATAGCCAAAAATAGACCACACCTAAAATCGGGTCAAATTATAATTGTTCAAGTTGATTCTGTAGTAATAAGATCAGCTAAGCCTTATTTGGCCACTTCAGGAGCAACTGTTCATCGCCATTATGGCGAAATCCTTTACGAAGGAGATACCTTAGTTACATTTATATATGAAAAATCACGATCTGGTGATATAACGCAGGGTCTTCCAAAAGTAGAACAAGTATTAGAAGTGCGTTCGATTGATTCAATATCGATGAGCCTAGAAAAGAGAATTGAGGGTTGGAACGAGCGTATAACAAGAATTCCACCCAAAATGAAAGGGGCGATCTCGTAG

mRNA sequence

GTTCTCACTCACTGGGAGACGACTCTGAAAGTTCTCAGAATCCTTCTCTCAGAAGAGCTCGAAATGGAGGCTGGTTATGTAATAAGATCAGCTAAGCCTTATTTGGCCACTTCAGGAGCAACTGTTCATCGCCATTATGGCGAAATCCTTTACGAAGGAGATACCTTAGTTACATTTATATATGAAAAATCACGATCTGGTGATATAACGCAGGGTCTTCCAAAAGTAGAACAAGTATTAGAAGTGCGTTCGATTGATTCAATATCGATGAGCCTAGAAAAGAGAATTGAGGGTTGGAACGAGCGTATAACAAGAATTCCACCCAAAATGAAAGGGGCGATCTCGTAG

Coding sequence (CDS)

GTTCTCACTCACTGGGAGACGACTCTGAAAGTTCTCAGAATCCTTCTCTCAGAAGAGCTCGAAATGGAGGCTGGTTATGTAATAAGATCAGCTAAGCCTTATTTGGCCACTTCAGGAGCAACTGTTCATCGCCATTATGGCGAAATCCTTTACGAAGGAGATACCTTAGTTACATTTATATATGAAAAATCACGATCTGGTGATATAACGCAGGGTCTTCCAAAAGTAGAACAAGTATTAGAAGTGCGTTCGATTGATTCAATATCGATGAGCCTAGAAAAGAGAATTGAGGGTTGGAACGAGCGTATAACAAGAATTCCACCCAAAATGAAAGGGGCGATCTCGTAG

Protein sequence

VLTHWETTLKVLRILLSEELEMEAGYVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRIPPKMKGAIS
Homology
[Close]
BLAST of Cla97C11G213370 vs. NCBI nr
Match: YP_247589.2 (RNA polymerase beta'' subunit [Cucumis sativus] >YP_009004034.1 RNA polymerase beta' subunit [Cucumis hystrix] >AHJ61376.1 RNA polymerase beta' subunit (plastid) [Cucumis hystrix] >ALF03291.1 RNA polymerase beta'' subunit (chloroplast) [Cucumis sativus var. hardwickii] >ANF28367.1 RNA polymerase beta'' subunit (chloroplast) [Cucumis sativus var. hardwickii] >ASY97448.1 RNA polymerase beta'' subunit (chloroplast) [Cucumis sativus var. hardwickii])

HSP 1 Score: 160.2 bits (404), Expect = 4.1e-36
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 27   VIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSID 86
            VIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSID
Sbjct: 1102 VIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSID 1161

Query: 87   SISMSLEKRIEGWNERITRI 107
            SISMSLEKRIEGWNERITRI
Sbjct: 1162 SISMSLEKRIEGWNERITRI 1181

[Close]
BLAST of Cla97C11G213370 vs. NCBI nr
Match: YP_009325979.1 (RNA polymerase beta'' subunit (chloroplast) [Citrullus lanatus] >YP_009348021.1 RNA polymerase beta'' subunit (plastid) [Citrullus mucosospermus] >APD52470.1 RNA polymerase beta'' subunit (chloroplast) [Citrullus lanatus] >APW82706.1 RNA polymerase beta'' subunit (plastid) [Citrullus mucosospermus] >APW82791.1 RNA polymerase beta'' subunit (plastid) [Citrullus mucosospermus] >APW82876.1 RNA polymerase beta'' subunit (plastid) [Citrullus lanatus subsp. vulgaris] >APW82961.1 RNA polymerase beta'' subunit (plastid) [Citrullus lanatus subsp. vulgaris] >APW83046.1 RNA polymerase beta'' subunit (plastid) [Citrullus lanatus subsp. vulgaris] >APW83131.1 RNA polymerase beta'' subunit (plastid) [Citrullus lanatus subsp. vulgaris] >APW83216.1 RNA polymerase beta'' subunit (plastid) [Citrullus lanatus subsp. vulgaris] >APW83301.1 RNA polymerase beta'' subunit (plastid) [Citrullus mucosospermus])

HSP 1 Score: 160.2 bits (404), Expect = 4.1e-36
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 27   VIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSID 86
            VIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSID
Sbjct: 1106 VIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSID 1165

Query: 87   SISMSLEKRIEGWNERITRI 107
            SISMSLEKRIEGWNERITRI
Sbjct: 1166 SISMSLEKRIEGWNERITRI 1185

[Close]
BLAST of Cla97C11G213370 vs. NCBI nr
Match: APW82451.1 (RNA polymerase beta'' subunit (plastid) [Citrullus lanatus subsp. vulgaris])

HSP 1 Score: 160.2 bits (404), Expect = 4.1e-36
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 27   VIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSID 86
            VIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSID
Sbjct: 1106 VIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSID 1165

Query: 87   SISMSLEKRIEGWNERITRI 107
            SISMSLEKRIEGWNERITRI
Sbjct: 1166 SISMSLEKRIEGWNERITRI 1185

[Close]
BLAST of Cla97C11G213370 vs. NCBI nr
Match: YP_009431547.1 (RNA polymerase beta'' subunit (chloroplast) [Citrullus amarus] >APW82536.1 RNA polymerase beta'' subunit (plastid) [Citrullus lanatus subsp. vulgaris] >ASY96148.1 RNA polymerase beta'' subunit (chloroplast) [Citrullus amarus])

HSP 1 Score: 160.2 bits (404), Expect = 4.1e-36
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 27   VIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSID 86
            VIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSID
Sbjct: 1106 VIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSID 1165

Query: 87   SISMSLEKRIEGWNERITRI 107
            SISMSLEKRIEGWNERITRI
Sbjct: 1166 SISMSLEKRIEGWNERITRI 1185

[Close]
BLAST of Cla97C11G213370 vs. NCBI nr
Match: YP_009346475.1 (RNA polymerase beta' subunit (chloroplast) [Cucumis x hytivus] >AOW71085.1 RNA polymerase beta' subunit (chloroplast) [Cucumis x hytivus])

HSP 1 Score: 160.2 bits (404), Expect = 4.1e-36
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 27   VIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSID 86
            VIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSID
Sbjct: 1102 VIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSID 1161

Query: 87   SISMSLEKRIEGWNERITRI 107
            SISMSLEKRIEGWNERITRI
Sbjct: 1162 SISMSLEKRIEGWNERITRI 1181

[Close]
BLAST of Cla97C11G213370 vs. TrEMBL
Match: tr|A0A1P8LF52|A0A1P8LF52_CITLA (DNA-directed RNA polymerase subunit beta'' OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.7e-36
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 27   VIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSID 86
            VIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSID
Sbjct: 1106 VIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSID 1165

Query: 87   SISMSLEKRIEGWNERITRI 107
            SISMSLEKRIEGWNERITRI
Sbjct: 1166 SISMSLEKRIEGWNERITRI 1185

[Close]
BLAST of Cla97C11G213370 vs. TrEMBL
Match: tr|A0A218KG46|A0A218KG46_CUCSA (DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus var. hardwickii OX=319220 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.7e-36
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 27   VIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSID 86
            VIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSID
Sbjct: 1102 VIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSID 1161

Query: 87   SISMSLEKRIEGWNERITRI 107
            SISMSLEKRIEGWNERITRI
Sbjct: 1162 SISMSLEKRIEGWNERITRI 1181

[Close]
BLAST of Cla97C11G213370 vs. TrEMBL
Match: tr|A0A1X9Q1J9|A0A1X9Q1J9_CUCSA (DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus OX=3659 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.7e-36
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 27   VIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSID 86
            VIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSID
Sbjct: 1106 VIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSID 1165

Query: 87   SISMSLEKRIEGWNERITRI 107
            SISMSLEKRIEGWNERITRI
Sbjct: 1166 SISMSLEKRIEGWNERITRI 1185

[Close]
BLAST of Cla97C11G213370 vs. TrEMBL
Match: tr|A0A1P8LFL6|A0A1P8LFL6_9ROSI (DNA-directed RNA polymerase subunit beta'' OS=Citrullus mucosospermus OX=519315 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.7e-36
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 27   VIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSID 86
            VIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSID
Sbjct: 1106 VIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSID 1165

Query: 87   SISMSLEKRIEGWNERITRI 107
            SISMSLEKRIEGWNERITRI
Sbjct: 1166 SISMSLEKRIEGWNERITRI 1185

[Close]
BLAST of Cla97C11G213370 vs. TrEMBL
Match: tr|A0A1P8LDF2|A0A1P8LDF2_CITLA (DNA-directed RNA polymerase subunit beta'' OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.7e-36
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 27   VIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSID 86
            VIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSID
Sbjct: 1106 VIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSID 1165

Query: 87   SISMSLEKRIEGWNERITRI 107
            SISMSLEKRIEGWNERITRI
Sbjct: 1166 SISMSLEKRIEGWNERITRI 1185

[Close]
BLAST of Cla97C11G213370 vs. Swiss-Prot
Match: sp|Q4VZP3|RPOC2_CUCSA (DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus OX=3659 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.3e-38
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 27   VIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSID 86
            VIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSID
Sbjct: 1106 VIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSID 1165

Query: 87   SISMSLEKRIEGWNERITRI 107
            SISMSLEKRIEGWNERITRI
Sbjct: 1166 SISMSLEKRIEGWNERITRI 1185

[Close]
BLAST of Cla97C11G213370 vs. Swiss-Prot
Match: sp|Q09FX1|RPOC2_NANDO (DNA-directed RNA polymerase subunit beta'' OS=Nandina domestica OX=41776 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 2.8e-36
Identity = 75/80 (93.75%), Postives = 78/80 (97.50%), Query Frame = 0 

Query: 27   VIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSID 86
            VIRSAKPYLAT GATVH HYGEILY+GDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSID
Sbjct: 1089 VIRSAKPYLATPGATVHGHYGEILYKGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSID 1148

Query: 87   SISMSLEKRIEGWNERITRI 107
            SISM+LEKR+EGWNERITRI
Sbjct: 1149 SISMNLEKRVEGWNERITRI 1168

[Close]
BLAST of Cla97C11G213370 vs. Swiss-Prot
Match: sp|A6MM26|RPOC2_BUXMI (DNA-directed RNA polymerase subunit beta'' OS=Buxus microphylla OX=153571 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 4.8e-36
Identity = 75/80 (93.75%), Postives = 77/80 (96.25%), Query Frame = 0 

Query: 27   VIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSID 86
            VIRSAKPYLAT GATVH HYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSID
Sbjct: 1101 VIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSID 1160

Query: 87   SISMSLEKRIEGWNERITRI 107
            SISM+LEKR+EGWNERI RI
Sbjct: 1161 SISMNLEKRVEGWNERIPRI 1180

[Close]
BLAST of Cla97C11G213370 vs. Swiss-Prot
Match: sp|Q0ZJ30|RPOC2_VITVI (DNA-directed RNA polymerase subunit beta'' OS=Vitis vinifera OX=29760 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 4.8e-36
Identity = 75/80 (93.75%), Postives = 77/80 (96.25%), Query Frame = 0 

Query: 27   VIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSID 86
            VIRSAKPYLAT GATVH HYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSID
Sbjct: 1104 VIRSAKPYLATLGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSID 1163

Query: 87   SISMSLEKRIEGWNERITRI 107
            SISM+LEKR+EGWNE ITRI
Sbjct: 1164 SISMNLEKRVEGWNEHITRI 1183

[Close]
BLAST of Cla97C11G213370 vs. Swiss-Prot
Match: sp|B1A925|RPOC2_CARPA (DNA-directed RNA polymerase subunit beta'' OS=Carica papaya OX=3649 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 6.2e-36
Identity = 74/80 (92.50%), Postives = 78/80 (97.50%), Query Frame = 0 

Query: 27   VIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSID 86
            VIRSAKPYLAT GATVH HYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSID
Sbjct: 1097 VIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSID 1156

Query: 87   SISMSLEKRIEGWNERITRI 107
            SIS++LEKR+EGWN+RITRI
Sbjct: 1157 SISLNLEKRVEGWNKRITRI 1176

[Close]
BLAST of Cla97C11G213370 vs. TAIR10
Match: ATCG00170.1 (DNA-directed RNA polymerase family protein)

HSP 1 Score: 142.5 bits (358), Expect = 1.6e-34
Identity = 71/80 (88.75%), Postives = 75/80 (93.75%), Query Frame = 0 

Query: 27   VIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSID 86
            VIRSAKPYLAT GA VH HY EILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSID
Sbjct: 1095 VIRSAKPYLATPGAKVHGHYSEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSID 1154

Query: 87   SISMSLEKRIEGWNERITRI 107
            SIS++LEKRI+GWN+ ITRI
Sbjct: 1155 SISLNLEKRIKGWNKCITRI 1174

The following BLAST results are available for this feature:
BLAST of Cla97C11G213370 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_247589.24.1e-36100.00RNA polymerase beta'' subunit [Cucumis sativus] >YP_009004034.1 RNA polymerase b... [more]
YP_009325979.14.1e-36100.00RNA polymerase beta'' subunit (chloroplast) [Citrullus lanatus] >YP_009348021.1 ... [more]
APW82451.14.1e-36100.00RNA polymerase beta'' subunit (plastid) [Citrullus lanatus subsp. vulgaris][more]
YP_009431547.14.1e-36100.00RNA polymerase beta'' subunit (chloroplast) [Citrullus amarus] >APW82536.1 RNA p... [more]
YP_009346475.14.1e-36100.00RNA polymerase beta' subunit (chloroplast) [Cucumis x hytivus] >AOW71085.1 RNA p... [more]
BLAST of Cla97C11G213370 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1P8LF52|A0A1P8LF52_CITLA2.7e-36100.00DNA-directed RNA polymerase subunit beta'' OS=Citrullus lanatus subsp. vulgaris ... [more]
tr|A0A218KG46|A0A218KG46_CUCSA2.7e-36100.00DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus var. hardwickii OX... [more]
tr|A0A1X9Q1J9|A0A1X9Q1J9_CUCSA2.7e-36100.00DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus OX=3659 GN=rpoC2 P... [more]
tr|A0A1P8LFL6|A0A1P8LFL6_9ROSI2.7e-36100.00DNA-directed RNA polymerase subunit beta'' OS=Citrullus mucosospermus OX=519315 ... [more]
tr|A0A1P8LDF2|A0A1P8LDF2_CITLA2.7e-36100.00DNA-directed RNA polymerase subunit beta'' OS=Citrullus lanatus subsp. vulgaris ... [more]
BLAST of Cla97C11G213370 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q4VZP3|RPOC2_CUCSA1.3e-38100.00DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus OX=3659 GN=rpoC2 P... [more]
sp|Q09FX1|RPOC2_NANDO2.8e-3693.75DNA-directed RNA polymerase subunit beta'' OS=Nandina domestica OX=41776 GN=rpoC... [more]
sp|A6MM26|RPOC2_BUXMI4.8e-3693.75DNA-directed RNA polymerase subunit beta'' OS=Buxus microphylla OX=153571 GN=rpo... [more]
sp|Q0ZJ30|RPOC2_VITVI4.8e-3693.75DNA-directed RNA polymerase subunit beta'' OS=Vitis vinifera OX=29760 GN=rpoC2 P... [more]
sp|B1A925|RPOC2_CARPA6.2e-3692.50DNA-directed RNA polymerase subunit beta'' OS=Carica papaya OX=3649 GN=rpoC2 PE=... [more]
BLAST of Cla97C11G213370 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00170.11.6e-3488.75DNA-directed RNA polymerase family protein[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0009507 chloroplast
cellular_component GO:0009536 plastid
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed RNA polymerase activity
molecular_function GO:0016779 nucleotidyltransferase activity
molecular_function GO:0016740 transferase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C11G213370.1Cla97C11G213370.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSUPERFAMILYSSF64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 25..97

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C11G213370Watermelon (97103) v2wmbwmbB045
Cla97C11G213370Watermelon (97103) v2wmbwmbB069
Cla97C11G213370Watermelon (97103) v2wmbwmbB075
Cla97C11G213370Silver-seed gourdcarwmbB0015
Cla97C11G213370Silver-seed gourdcarwmbB0088
Cla97C11G213370Silver-seed gourdcarwmbB0163
Cla97C11G213370Silver-seed gourdcarwmbB0269
Cla97C11G213370Silver-seed gourdcarwmbB0582
Cla97C11G213370Silver-seed gourdcarwmbB0605
Cla97C11G213370Silver-seed gourdcarwmbB0689
Cla97C11G213370Silver-seed gourdcarwmbB1051
Cla97C11G213370Cucumber (Gy14) v2cgybwmbB183
Cla97C11G213370Cucumber (Gy14) v2cgybwmbB271
Cla97C11G213370Cucumber (Gy14) v2cgybwmbB346
Cla97C11G213370Cucumber (Gy14) v2cgybwmbB403
Cla97C11G213370Cucumber (Gy14) v1cgywmbB224
Cla97C11G213370Cucumber (Gy14) v1cgywmbB318
Cla97C11G213370Cucurbita maxima (Rimu)cmawmbB253
Cla97C11G213370Cucurbita maxima (Rimu)cmawmbB296
Cla97C11G213370Cucurbita maxima (Rimu)cmawmbB676
Cla97C11G213370Cucurbita maxima (Rimu)cmawmbB724
Cla97C11G213370Cucurbita maxima (Rimu)cmawmbB727
Cla97C11G213370Cucurbita maxima (Rimu)cmawmbB729
Cla97C11G213370Cucurbita maxima (Rimu)cmawmbB849
Cla97C11G213370Cucurbita maxima (Rimu)cmawmbB881
Cla97C11G213370Cucurbita moschata (Rifu)cmowmbB233
Cla97C11G213370Cucurbita moschata (Rifu)cmowmbB278
Cla97C11G213370Cucurbita moschata (Rifu)cmowmbB648
Cla97C11G213370Cucurbita moschata (Rifu)cmowmbB697
Cla97C11G213370Cucurbita moschata (Rifu)cmowmbB700
Cla97C11G213370Cucurbita moschata (Rifu)cmowmbB825
Cla97C11G213370Cucurbita moschata (Rifu)cmowmbB853
Cla97C11G213370Wild cucumber (PI 183967)cpiwmbB196
Cla97C11G213370Wild cucumber (PI 183967)cpiwmbB291
Cla97C11G213370Wild cucumber (PI 183967)cpiwmbB381
Cla97C11G213370Wild cucumber (PI 183967)cpiwmbB447
Cla97C11G213370Cucumber (Chinese Long) v3cucwmbB193
Cla97C11G213370Cucumber (Chinese Long) v3cucwmbB287
Cla97C11G213370Cucumber (Chinese Long) v3cucwmbB380
Cla97C11G213370Cucumber (Chinese Long) v3cucwmbB441
Cla97C11G213370Cucumber (Chinese Long) v2cuwmbB192
Cla97C11G213370Cucumber (Chinese Long) v2cuwmbB284
Cla97C11G213370Cucumber (Chinese Long) v2cuwmbB423
Cla97C11G213370Bottle gourd (USVL1VR-Ls)lsiwmbB122
Cla97C11G213370Bottle gourd (USVL1VR-Ls)lsiwmbB222
Cla97C11G213370Bottle gourd (USVL1VR-Ls)lsiwmbB225
Cla97C11G213370Bottle gourd (USVL1VR-Ls)lsiwmbB274
Cla97C11G213370Melon (DHL92) v3.6.1medwmbB267
Cla97C11G213370Melon (DHL92) v3.6.1medwmbB313
Cla97C11G213370Melon (DHL92) v3.5.1mewmbB282
Cla97C11G213370Melon (DHL92) v3.5.1mewmbB324
Cla97C11G213370Watermelon (Charleston Gray)wcgwmbB041
Cla97C11G213370Watermelon (Charleston Gray)wcgwmbB065
Cla97C11G213370Watermelon (Charleston Gray)wcgwmbB196
Cla97C11G213370Watermelon (Charleston Gray)wcgwmbB291
Cla97C11G213370Watermelon (97103) v1wmwmbB061
Cla97C11G213370Watermelon (97103) v1wmwmbB286
Cla97C11G213370Watermelon (97103) v1wmwmbB362
Cla97C11G213370Wax gourdwgowmbB029
Cla97C11G213370Wax gourdwgowmbB290
Cla97C11G213370Wax gourdwgowmbB415
Cla97C11G213370Wax gourdwgowmbB519