Cla97C11G213040 (gene) Watermelon (97103) v2

Overview
NameCla97C11G213040
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionUnknown protein
LocationCla97Chr11 : 6395138 .. 6395651 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCAACAAAAGACTGTTCTTAAAACAAACTATCCAGGTCTACCAAAGATTGATCCTTACAAGCCAATCATTCAACCAAATACTCTTGCCATTGGAGTACTCAAGAATGATCCAGAAGGCTTATTGAAGGAGATCAATAAGAAACTCGCTACCTTCAAATTTGATAAACCAGAAGCTGAAGCCTCTAAGAAGATAGAAGTTTCTAGGAATATTAATATGATAATAAAAGTCGAGGAACCTTTTTAAAAAAATTCTTCCTATTTGAACCTACAACACTAATATGAAGAATCATTACCTAACACCATCTCCTCCAAACCTTGGATGATGATTTCAAGCCAGACCAGCATACTTATGATGTAACTTATGTCATTAGCTAGCAACAGCTTATGTTCTAATTTTCGAATTCACTGGAAATTTACAAAGCTGGTGGCATAATCAATTAACGGATCATGATAGAAATGTTATTTTGACAGCAACAAAGACAGTCGTTAGACAAGAAGGCAACCCATAA

mRNA sequence

ATGGATCAACAAAAGACTGTTCTTAAAACAAACTATCCAGGTCTACCAAAGATTGATCCTTACAAGCCAATCATTCAACCAAATACTCTTGCCATTGGAGTACTCAAGAATGATCCAGAAGGCTTATTGAAGGAGATCAATAAGAAACTCGCTACCTTCAAATTTGATAAACCAGAAGCTGAAGCCTCTAAGAAGATAGAACTAGCAACAGCTTATGTTCTAATTTTCGAATTCACTGGAAATTTACAAAGCTGGTGGCATAATCAATTAACGGATCATGATAGAAATGTTATTTTGACAGCAACAAAGACAGTCGTTAGACAAGAAGGCAACCCATAA

Coding sequence (CDS)

ATGGATCAACAAAAGACTGTTCTTAAAACAAACTATCCAGGTCTACCAAAGATTGATCCTTACAAGCCAATCATTCAACCAAATACTCTTGCCATTGGAGTACTCAAGAATGATCCAGAAGGCTTATTGAAGGAGATCAATAAGAAACTCGCTACCTTCAAATTTGATAAACCAGAAGCTGAAGCCTCTAAGAAGATAGAACTAGCAACAGCTTATGTTCTAATTTTCGAATTCACTGGAAATTTACAAAGCTGGTGGCATAATCAATTAACGGATCATGATAGAAATGTTATTTTGACAGCAACAAAGACAGTCGTTAGACAAGAAGGCAACCCATAA

Protein sequence

MDQQKTVLKTNYPGLPKIDPYKPIIQPNTLAIGVLKNDPEGLLKEINKKLATFKFDKPEAEASKKIELATAYVLIFEFTGNLQSWWHNQLTDHDRNVILTATKTVVRQEGNP
Homology
[Close]
BLAST of Cla97C11G213040 vs. NCBI nr
Match: XP_022151716.1 (uncharacterized protein LOC111019629 [Momordica charantia])

HSP 1 Score: 70.9 bits (172), Expect = 3.2e-09
Identity = 51/188 (27.13%), Postives = 69/188 (36.70%), Query Frame = 0 

Query: 15  LPKIDPYKPIIQPNTLAIGVLKNDPEGLLKEINKKLATFKFDKPE--------------- 74
           +P +DP +PI QPN+  IG LK DP  L  +IN++L++   +K +               
Sbjct: 57  IPPVDPRQPIFQPNSFKIGPLKEDPSDLFAKINRRLSSLSLNKRDSSQKNEVAKSINVVA 116

Query: 75  ------------------------------------------------------------ 112
                                                                       
Sbjct: 117 TIPTITQASSSTILLVTMHTEVKNHYPRPSPPDMGWDDLRHDQRTYDESSIITWNIDGYS 176

[Close]
BLAST of Cla97C11G213040 vs. NCBI nr
Match: KGN65521.1 (hypothetical protein Csa_1G434190 [Cucumis sativus])

HSP 1 Score: 64.7 bits (156), Expect = 2.3e-07
Identity = 28/52 (53.85%), Postives = 38/52 (73.08%), Query Frame = 0 

Query: 60  AEASKKIELATAYVLIFEFTGNLQSWWHNQLTDHDRNVILTATKTVVRQEGN 112
           A +++K    T+ +LI  F GNL+ WWHNQLT+HDR  ILTATKT+V+ E +
Sbjct: 425 AFSARKSIYETSQILILGFNGNLRRWWHNQLTEHDRQRILTATKTIVKTENS 476

[Close]
BLAST of Cla97C11G213040 vs. TrEMBL
Match: tr|A0A0A0M024|A0A0A0M024_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G434190 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.5e-07
Identity = 28/52 (53.85%), Postives = 38/52 (73.08%), Query Frame = 0 

Query: 60  AEASKKIELATAYVLIFEFTGNLQSWWHNQLTDHDRNVILTATKTVVRQEGN 112
           A +++K    T+ +LI  F GNL+ WWHNQLT+HDR  ILTATKT+V+ E +
Sbjct: 425 AFSARKSIYETSQILILGFNGNLRRWWHNQLTEHDRQRILTATKTIVKTENS 476

The following BLAST results are available for this feature:
BLAST of Cla97C11G213040 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022151716.13.2e-0927.13uncharacterized protein LOC111019629 [Momordica charantia][more]
KGN65521.12.3e-0753.85hypothetical protein Csa_1G434190 [Cucumis sativus][more]
BLAST of Cla97C11G213040 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0M024|A0A0A0M024_CUCSA1.5e-0753.85Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G434190 PE=4 SV=1[more]
BLAST of Cla97C11G213040 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C11G213040 vs. TAIR10
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C11G213040.1Cla97C11G213040.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C11G213040ClCG11G006120Watermelon (Charleston Gray)wcgwmbB065
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C11G213040Watermelon (97103) v2wmbwmbB069
Cla97C11G213040Silver-seed gourdcarwmbB0015
Cla97C11G213040Silver-seed gourdcarwmbB0163
Cla97C11G213040Silver-seed gourdcarwmbB0269
Cla97C11G213040Silver-seed gourdcarwmbB0582
Cla97C11G213040Silver-seed gourdcarwmbB0605
Cla97C11G213040Silver-seed gourdcarwmbB0689
Cla97C11G213040Silver-seed gourdcarwmbB1051
Cla97C11G213040Cucumber (Gy14) v2cgybwmbB271
Cla97C11G213040Cucumber (Gy14) v2cgybwmbB403
Cla97C11G213040Cucumber (Gy14) v1cgywmbB224
Cla97C11G213040Cucurbita maxima (Rimu)cmawmbB253
Cla97C11G213040Cucurbita maxima (Rimu)cmawmbB296
Cla97C11G213040Cucurbita maxima (Rimu)cmawmbB676
Cla97C11G213040Cucurbita maxima (Rimu)cmawmbB724
Cla97C11G213040Cucurbita maxima (Rimu)cmawmbB727
Cla97C11G213040Cucurbita maxima (Rimu)cmawmbB729
Cla97C11G213040Cucurbita maxima (Rimu)cmawmbB849
Cla97C11G213040Cucurbita maxima (Rimu)cmawmbB881
Cla97C11G213040Cucurbita moschata (Rifu)cmowmbB278
Cla97C11G213040Cucurbita moschata (Rifu)cmowmbB648
Cla97C11G213040Cucurbita moschata (Rifu)cmowmbB697
Cla97C11G213040Cucurbita moschata (Rifu)cmowmbB700
Cla97C11G213040Cucurbita moschata (Rifu)cmowmbB825
Cla97C11G213040Cucurbita moschata (Rifu)cmowmbB853
Cla97C11G213040Wild cucumber (PI 183967)cpiwmbB291
Cla97C11G213040Wild cucumber (PI 183967)cpiwmbB447
Cla97C11G213040Cucumber (Chinese Long) v3cucwmbB287
Cla97C11G213040Cucumber (Chinese Long) v3cucwmbB441
Cla97C11G213040Cucumber (Chinese Long) v2cuwmbB284
Cla97C11G213040Cucumber (Chinese Long) v2cuwmbB423
Cla97C11G213040Bottle gourd (USVL1VR-Ls)lsiwmbB122
Cla97C11G213040Bottle gourd (USVL1VR-Ls)lsiwmbB222
Cla97C11G213040Bottle gourd (USVL1VR-Ls)lsiwmbB274
Cla97C11G213040Melon (DHL92) v3.6.1medwmbB267
Cla97C11G213040Melon (DHL92) v3.5.1mewmbB282
Cla97C11G213040Watermelon (Charleston Gray)wcgwmbB196
Cla97C11G213040Watermelon (97103) v1wmwmbB286
Cla97C11G213040Watermelon (97103) v1wmwmbB362
Cla97C11G213040Wax gourdwgowmbB290