Cla97C11G212870 (gene) Watermelon (97103) v2

Overview
NameCla97C11G212870
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionKelch-like protein 12
LocationCla97Chr11 : 6211128 .. 6211975 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGACCCACGGGAGAAATCATGGAGAGAAATTTCTAGAATGTCTACAAAGAGGGGATGCCATTGTTTGGCTGTACTCAACGAAAAATTGTAAGTTTTCCTCCCCTTTTCACTTAATTCAACTACCTTGTTAGCTGAACTCATATCCATTTCAAAAATTAATGATCAATTAAAGGTGAAATATCGGGGGTTTTTTAAATACAAAGATTACATATTTTGATCACATTTTTGAAAATACGATACTGCTTTGAGTAGAAAATTCTAAATGAACTTGTATGTTTGTATACACATATATATATAATGTCTTTTTGTTTTATAAAAATATAACTATTAGTCTAAAATTGTTTGTTGGTTATATGATTTCAACTGAAAAGCTATTACTACTACCATTTTAGTTTACTATAAACAAAATAGTTTTGTTAAACTTAAAACAAAAGCATCATTCATAATCTTGAGTCTCTTTTTGCAGATATGCATTGGGTAGATATAGTGGAGATGACTTCATCCCTACCGTTGAGGTATTTGATCCTCGTCGCGGTTTGTGGACTAAAACAGAGCCCATGAATGAATCAAGGGGCTACTCTGCTACTGCCGTGATTGGAGATACAATATATGTTTTTGGTGGTATGAAAAACATGAAACTTTCGGAAAGGGTATGTCATTTCATTTGTTGTAGCGCCATATGGAAGAGTTTATTCATTGATTGAAAATAACTTGTCCGTCTTATGCCAAACTTTTTAAACCTTTATCTCACAGGTAGAGTGTTACAAAGAGCATCGAGGTTGGGAGTTAACGAACCTCGCAGCATTTGGCAAAAGATGCTTTTTCTCTGCCGTTGTTTTGTAA

mRNA sequence

ATGTTTGACCCACGGGAGAAATCATGGAGAGAAATTTCTAGAATGTCTACAAAGAGGGGATGCCATTGTTTGGCTGTACTCAACGAAAAATTATATGCATTGGGTAGATATAGTGGAGATGACTTCATCCCTACCGTTGAGGTATTTGATCCTCGTCGCGGTTTGTGGACTAAAACAGAGCCCATGAATGAATCAAGGGGCTACTCTGCTACTGCCGTGATTGGAGATACAATATATGTTTTTGGTGGTATGAAAAACATGAAACTTTCGGAAAGGGTAGAGTGTTACAAAGAGCATCGAGGTTGGGAGTTAACGAACCTCGCAGCATTTGGCAAAAGATGCTTTTTCTCTGCCGTTGTTTTGTAA

Coding sequence (CDS)

ATGTTTGACCCACGGGAGAAATCATGGAGAGAAATTTCTAGAATGTCTACAAAGAGGGGATGCCATTGTTTGGCTGTACTCAACGAAAAATTATATGCATTGGGTAGATATAGTGGAGATGACTTCATCCCTACCGTTGAGGTATTTGATCCTCGTCGCGGTTTGTGGACTAAAACAGAGCCCATGAATGAATCAAGGGGCTACTCTGCTACTGCCGTGATTGGAGATACAATATATGTTTTTGGTGGTATGAAAAACATGAAACTTTCGGAAAGGGTAGAGTGTTACAAAGAGCATCGAGGTTGGGAGTTAACGAACCTCGCAGCATTTGGCAAAAGATGCTTTTTCTCTGCCGTTGTTTTGTAA

Protein sequence

MFDPREKSWREISRMSTKRGCHCLAVLNEKLYALGRYSGDDFIPTVEVFDPRRGLWTKTEPMNESRGYSATAVIGDTIYVFGGMKNMKLSERVECYKEHRGWELTNLAAFGKRCFFSAVVL
Homology
[Close]
BLAST of Cla97C11G212870 vs. NCBI nr
Match: KRG94483.1 (hypothetical protein GLYMA_19G088100 [Glycine max])

HSP 1 Score: 67.8 bits (164), Expect = 2.9e-08
Identity = 29/49 (59.18%), Postives = 37/49 (75.51%), Query Frame = 0 

Query: 1   MFDPREKSWREISR-MSTKRGCHCLAVLNEKLYALGRYSGDDFIPTVEV 49
           +FDPR+ SW +I   M+ KRGCH L VLNEKLYALG + GD  +P++EV
Sbjct: 169 IFDPRDHSWTKIPNIMNVKRGCHSLVVLNEKLYALGGFDGDKIVPSIEV 217

[Close]
BLAST of Cla97C11G212870 vs. NCBI nr
Match: OVA17211.1 (Kelch repeat type 1 [Macleaya cordata])

HSP 1 Score: 63.2 bits (152), Expect = 7.2e-07
Identity = 29/48 (60.42%), Postives = 33/48 (68.75%), Query Frame = 0 

Query: 2   FDPRE-KSWREISRMSTKRGCHCLAVLNEKLYALGRYSGDDFIPTVEV 49
           FDPRE  SW  +  ++T R CH L VLNEKLYALG Y G   IP+VEV
Sbjct: 683 FDPREVVSWSRLPNLNTSRACHSLVVLNEKLYALGGYDGTKMIPSVEV 730

[Close]
BLAST of Cla97C11G212870 vs. NCBI nr
Match: PKU84138.1 (hypothetical protein MA16_Dca026073 [Dendrobium catenatum])

HSP 1 Score: 55.5 bits (132), Expect = 1.5e-04
Identity = 23/46 (50.00%), Postives = 30/46 (65.22%), Query Frame = 0 

Query: 3  DPREKSWREISRMSTKRGCHCLAVLNEKLYALGRYSGDDFIPTVEV 49
          DPRE S   I  M T+RGCH + VLNEKL+ +G Y G   + +VE+
Sbjct: 51 DPREVSCSRIPNMITRRGCHSMTVLNEKLFVMGGYDGGKMVSSVEI 96

[Close]
BLAST of Cla97C11G212870 vs. NCBI nr
Match: AQK84188.1 (DCD (Development and Cell Death) domain protein [Zea mays])

HSP 1 Score: 54.7 bits (130), Expect = 2.6e-04
Identity = 22/42 (52.38%), Postives = 28/42 (66.67%), Query Frame = 0 

Query: 2  FDPREKSWREISRMSTKRGCHCLAVLNEKLYALGRYSGDDFI 44
          +D RE  W  +  M+TKRGCH L VL E LYA+G Y+GD  +
Sbjct: 9  YDQREGVWVRLRSMNTKRGCHALTVLGESLYAMGGYNGDKMV 50

[Close]
BLAST of Cla97C11G212870 vs. NCBI nr
Match: EFJ25220.1 (hypothetical protein SELMODRAFT_99520 [Selaginella moellendorffii])

HSP 1 Score: 53.5 bits (127), Expect = 5.7e-04
Identity = 24/46 (52.17%), Postives = 31/46 (67.39%), Query Frame = 0 

Query: 2   FDPREKSWREISRMSTKRGCHCLAVLNEKLYALGRYSGDDFIPTVE 48
           FDPRE  W ++  M++KRG    AVLN +LYALG + G  F+ TVE
Sbjct: 199 FDPRESVWTKMPSMTSKRGSLSAAVLNGRLYALGGFDGSVFLSTVE 244

[Close]
BLAST of Cla97C11G212870 vs. TrEMBL
Match: tr|K7MXD4|K7MXD4_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_19G088100 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.9e-08
Identity = 29/49 (59.18%), Postives = 37/49 (75.51%), Query Frame = 0 

Query: 1   MFDPREKSWREISR-MSTKRGCHCLAVLNEKLYALGRYSGDDFIPTVEV 49
           +FDPR+ SW +I   M+ KRGCH L VLNEKLYALG + GD  +P++EV
Sbjct: 169 IFDPRDHSWTKIPNIMNVKRGCHSLVVLNEKLYALGGFDGDKIVPSIEV 217

[Close]
BLAST of Cla97C11G212870 vs. TrEMBL
Match: tr|A0A200R3C1|A0A200R3C1_9MAGN (Kelch repeat type 1 OS=Macleaya cordata OX=56857 GN=BVC80_1837g5 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.8e-07
Identity = 29/48 (60.42%), Postives = 33/48 (68.75%), Query Frame = 0 

Query: 2   FDPRE-KSWREISRMSTKRGCHCLAVLNEKLYALGRYSGDDFIPTVEV 49
           FDPRE  SW  +  ++T R CH L VLNEKLYALG Y G   IP+VEV
Sbjct: 683 FDPREVVSWSRLPNLNTSRACHSLVVLNEKLYALGGYDGTKMIPSVEV 730

[Close]
BLAST of Cla97C11G212870 vs. TrEMBL
Match: tr|M8AU38|M8AU38_AEGTA (Kelch-like protein 5 OS=Aegilops tauschii OX=37682 GN=F775_14674 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.4e-06
Identity = 25/47 (53.19%), Postives = 32/47 (68.09%), Query Frame = 0 

Query: 2   FDPREKSWREISRMSTKRGCHCLAVLNEKLYALGRYSGDDFIPTVEV 49
           +DPRE  W +++ M TKRG H + VL E LYALG Y GD  + TVE+
Sbjct: 569 YDPREGFWTQLASMKTKRGSHSVTVLGESLYALGGYDGDQMLSTVEI 615

[Close]
BLAST of Cla97C11G212870 vs. TrEMBL
Match: tr|N1R500|N1R500_AEGTA (Uncharacterized protein OS=Aegilops tauschii OX=37682 GN=F775_04866 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.3e-06
Identity = 23/47 (48.94%), Postives = 32/47 (68.09%), Query Frame = 0 

Query: 2   FDPREKSWREISRMSTKRGCHCLAVLNEKLYALGRYSGDDFIPTVEV 49
           +DPRE  W ++  M  +RGCH +AVL E LYA+G Y GD  + +VE+
Sbjct: 828 YDPREGFWVKLPSMKARRGCHAVAVLGEVLYAIGGYDGDSMVSSVEI 874

[Close]
BLAST of Cla97C11G212870 vs. TrEMBL
Match: tr|K3YD12|K3YD12_SETIT (Uncharacterized protein OS=Setaria italica OX=4555 GN=SETIT_012115mg PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.5e-05
Identity = 23/47 (48.94%), Postives = 32/47 (68.09%), Query Frame = 0 

Query: 2   FDPREKSWREISRMSTKRGCHCLAVLNEKLYALGRYSGDDFIPTVEV 49
           +D RE  W  +  M+T+RGCH L VL E LYA+G Y+GD  + +VE+
Sbjct: 589 YDQREGVWVRLPSMNTRRGCHTLTVLGETLYAIGGYNGDKMVSSVEI 635

The following BLAST results are available for this feature:
BLAST of Cla97C11G212870 vs. NCBI nr
Match NameE-valueIdentityDescription
KRG94483.12.9e-0859.18hypothetical protein GLYMA_19G088100 [Glycine max][more]
OVA17211.17.2e-0760.42Kelch repeat type 1 [Macleaya cordata][more]
PKU84138.11.5e-0450.00hypothetical protein MA16_Dca026073 [Dendrobium catenatum][more]
AQK84188.12.6e-0452.38DCD (Development and Cell Death) domain protein [Zea mays][more]
EFJ25220.15.7e-0452.17hypothetical protein SELMODRAFT_99520 [Selaginella moellendorffii][more]
BLAST of Cla97C11G212870 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|K7MXD4|K7MXD4_SOYBN1.9e-0859.18Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_19G088100 PE=4 SV=1[more]
tr|A0A200R3C1|A0A200R3C1_9MAGN4.8e-0760.42Kelch repeat type 1 OS=Macleaya cordata OX=56857 GN=BVC80_1837g5 PE=4 SV=1[more]
tr|M8AU38|M8AU38_AEGTA1.4e-0653.19Kelch-like protein 5 OS=Aegilops tauschii OX=37682 GN=F775_14674 PE=4 SV=1[more]
tr|N1R500|N1R500_AEGTA5.3e-0648.94Uncharacterized protein OS=Aegilops tauschii OX=37682 GN=F775_04866 PE=4 SV=1[more]
tr|K3YD12|K3YD12_SETIT1.5e-0548.94Uncharacterized protein OS=Setaria italica OX=4555 GN=SETIT_012115mg PE=4 SV=1[more]
BLAST of Cla97C11G212870 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C11G212870 vs. TAIR10
Match NameE-valueIdentityDescription
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR015915Kelch-typ_b-propeller
IPR006652Kelch_1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C11G212870.1Cla97C11G212870.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006652Kelch repeat type 1SMARTSM00612kelc_smartcoord: 30..76
e-value: 4.7E-5
score: 32.8
IPR006652Kelch repeat type 1PFAMPF01344Kelch_1coord: 19..63
e-value: 1.5E-6
score: 27.6
coord: 65..96
e-value: 3.8E-5
score: 23.1
IPR015915Kelch-type beta propellerGENE3DG3DSA:2.120.10.80coord: 1..121
e-value: 6.9E-30
score: 106.0
IPR015915Kelch-type beta propellerSUPERFAMILYSSF117281Kelch motifcoord: 1..120
NoneNo IPR availablePANTHERPTHR24412:SF411SUBFAMILY NOT NAMEDcoord: 2..121
NoneNo IPR availablePANTHERPTHR24412FAMILY NOT NAMEDcoord: 2..121

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C11G212870Watermelon (97103) v2wmbwmbB046
Cla97C11G212870Watermelon (97103) v2wmbwmbB069
Cla97C11G212870Watermelon (97103) v2wmbwmbB076
Cla97C11G212870Silver-seed gourdcarwmbB0015
Cla97C11G212870Silver-seed gourdcarwmbB0163
Cla97C11G212870Silver-seed gourdcarwmbB0269
Cla97C11G212870Silver-seed gourdcarwmbB0582
Cla97C11G212870Silver-seed gourdcarwmbB0689
Cla97C11G212870Silver-seed gourdcarwmbB0952
Cla97C11G212870Silver-seed gourdcarwmbB1051
Cla97C11G212870Cucumber (Gy14) v2cgybwmbB271
Cla97C11G212870Cucumber (Gy14) v2cgybwmbB347
Cla97C11G212870Cucumber (Gy14) v2cgybwmbB403
Cla97C11G212870Cucumber (Gy14) v1cgywmbB210
Cla97C11G212870Cucumber (Gy14) v1cgywmbB224
Cla97C11G212870Cucumber (Gy14) v1cgywmbB243
Cla97C11G212870Cucurbita maxima (Rimu)cmawmbB253
Cla97C11G212870Cucurbita maxima (Rimu)cmawmbB296
Cla97C11G212870Cucurbita maxima (Rimu)cmawmbB676
Cla97C11G212870Cucurbita maxima (Rimu)cmawmbB724
Cla97C11G212870Cucurbita maxima (Rimu)cmawmbB727
Cla97C11G212870Cucurbita maxima (Rimu)cmawmbB729
Cla97C11G212870Cucurbita maxima (Rimu)cmawmbB849
Cla97C11G212870Cucurbita moschata (Rifu)cmowmbB278
Cla97C11G212870Cucurbita moschata (Rifu)cmowmbB648
Cla97C11G212870Cucurbita moschata (Rifu)cmowmbB697
Cla97C11G212870Cucurbita moschata (Rifu)cmowmbB700
Cla97C11G212870Wild cucumber (PI 183967)cpiwmbB291
Cla97C11G212870Wild cucumber (PI 183967)cpiwmbB447
Cla97C11G212870Cucumber (Chinese Long) v3cucwmbB287
Cla97C11G212870Cucumber (Chinese Long) v3cucwmbB381
Cla97C11G212870Cucumber (Chinese Long) v3cucwmbB441
Cla97C11G212870Cucumber (Chinese Long) v2cuwmbB284
Cla97C11G212870Cucumber (Chinese Long) v2cuwmbB365
Cla97C11G212870Cucumber (Chinese Long) v2cuwmbB423
Cla97C11G212870Bottle gourd (USVL1VR-Ls)lsiwmbB122
Cla97C11G212870Bottle gourd (USVL1VR-Ls)lsiwmbB222
Cla97C11G212870Bottle gourd (USVL1VR-Ls)lsiwmbB270
Cla97C11G212870Melon (DHL92) v3.6.1medwmbB267
Cla97C11G212870Melon (DHL92) v3.5.1mewmbB282
Cla97C11G212870Melon (DHL92) v3.5.1mewmbB522
Cla97C11G212870Watermelon (Charleston Gray)wcgwmbB042
Cla97C11G212870Watermelon (Charleston Gray)wcgwmbB065
Cla97C11G212870Watermelon (Charleston Gray)wcgwmbB196
Cla97C11G212870Watermelon (Charleston Gray)wcgwmbB294
Cla97C11G212870Watermelon (97103) v1wmwmbB152
Cla97C11G212870Watermelon (97103) v1wmwmbB286
Cla97C11G212870Watermelon (97103) v1wmwmbB362
Cla97C11G212870Wax gourdwgowmbB030
Cla97C11G212870Wax gourdwgowmbB290
Cla97C11G212870Wax gourdwgowmbB414