Cla97C11G212250 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C11G212250
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	DNA-directed RNA polymerase II subunit 4
Location	Cla97Chr11 : 5538368 .. 5541292 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGGAGAAGAAGAAGAAAATGCTGCAGAGCTTAAAATTGGGGATGGTACCAATCTTTCTGTACATCTCTGATTTTCTATCAATATTCAATTCAATGACATTTAAGTCGCTCAAACTTTCTGTGGCAATGTGTTTTCTTCGTATATTTGAAAATTATGCATTTATTGGGAAATTCATGTATTTGATCTTTTAATTTGCTTAAAAAGTGAGAAACTGAATTTACTATGTTGTTCCCCATGCCTCATCATATATGGACCCTTATTGCACATTCTTTGGACCTTCTAGTAGCCAATGTGGAGATTGTTTTTCTGTTTTTAACAATGCATATAGCTTGACTGGGAATGTGGAGTCAATGTAAACATTAATTAATCTTAAAGAAATTTTGTAGAGAGTGGTAATTTAAAGAAATGACTTTTGTTTTCTTGATAAGAAATCGAGATTTCATTGAGAAAAGTGAAAGTGTACCAACGCATACAAACAAACCCACGAAAGGAGTCCTCAATTGTAATGCAAAGAAGTTACACATACCTAGTGGATGGTTGTTTTGCTTAGTCGAGAGAGAAGACAGATAATAAACTTCCTTTTTTCTTTAAAGCCATTGGTTTATGTGATTATGTCTTGTAGCCATCTACTTAGGATCGCAGAATCTCATAACTTTCTCAGATATTGTTAGGTAAGAAATAGTCATTAGATAGGTGGTTGGACATCCATGTTTATGAAAAAAAGTTTCTTTTACATGCACCTTCCATTTGTTTTTTTATGATATCATGCCATTATTTTACATAATGCATATTCTTAATTTTATGAGCTGGTTCAATTACTAAGTTGAAGCATCACTTCCTTAATGATGTGAAAACTTGGCAAATTGGATCTAAAAAGCTGTGGTCCTTGTGACATGATTAAGACACCGCAATCCATGGTGGTCACCTACCCAGGATTTAATATCCTACAAGTTTCCTTGACACTCAAATGTTGTAGGGTCAGGCGGGCTGTTTCGTGAGATTAGTCGAGATGCGCGTAAACTGGTCCGGACACTCACGATATAAATAATAAAAAAAAAAGATTAAAACACTTCAGTTCATATCTGTTGTTTAAGATTGAAATAGCAAAATGGGAGTTTATATATATATGTATATATATTGGATTGACATTATATGGTTCTAAGGTTTTTGAAATTTTAGACGAAGATATGTGATCTGTGCAAAATCTCAATTCTAATCTATAATCATTTATCAATAAGATACTCAAACTATTGTAAGCTTGTCCAGGATAATGCAACGCTTGAGAGTCTGAGACTAGCCAAATCTTTGTGCTTTATATGGATAACTAATTAATCAAAATTTAAGCATTTGCCATCAAAATCTTTTTGGGGAATACTCCTAAAGCTTTTTCAATTTCTTGTATTTATTTTGCTCTTGGTGCTCTTTGTTCTAAGGTCCATAAAAAGAAAATATAAGACATGATATCTGGCACTTACTTCCTTTGTCTACCTGCAGAGTTTTTAAAAGCTAAGTGTTTAATGAATTGCGAAGTTTCTTTGATCCTTGAACACAAGTATGAGCAGCTTCAACAAATGGCCGAGGATCCAACAAATCAAATTTCTCAGTGAGATTTATGTTTATTAAATTTATTGATTCATAAGTTAAACTAGAGTTTCTCTTCTTCGTTGGAATAGCTAAAGCCTAAATATATAATTAAATTATGATATTCATTCTCACTTGCCATACAATACCAATGGATTTTTAATTTAGAATTTGGTCTTCTTTGGCAGAGTGTTTGAGAAGTCATTGCAGTATGTGAAACGCTTTAGTCGCTATAAGAACCCTGATGCTGTTAGACAAGTCCGAGAGTATCCTTTATTCTTAATGTTTTTTATTTTATGGGATGGTGGGAAGGATGGTTGTGCACATCTACTCTATGCTATAACTAACCCCATTTTGAACTAGATTTGCCAAAGTTCATTATATCTATACACCCATACTATTTTATAGGTTTAATATTTAATTCATGGAGGGAAATACAATTTACTTTATCACCTAAGTTCTAAACACTAAAGTTGGCTTCATTGTTTGAAATTGCGTAAAAGTGGTTAAATCTTAACTACTATCATATAGAATTCTAAGCAGATACCAACTAGCTGAGTTTGAGGTATCTATACTGGATCATTTTGTTTAATTAACTTACTTATTATTATTCTATGGAAAGGTTTATCTCCTCTTGAAATTTGCAGCTATGTGTTCTTGGCAACCTTTGCCCTGAAACTGTAGAGGAAGCTATCTCCATAGTTCCATCTTTGAAGGTTTCTTTTGTCATCCCTTCTAATGCCTACATTTTGTTTATCTTTCAATAATGAAGATGCACCGAGTTTTAAATTAATTTTAAAACTAAAAAGTGTAATTTGAAAAAAAAAAATATATATATATGGCAAATTGTAGAAACCACCGCTAAAGTATGGTGGGTAGTTGCAATTACACTCTCAAATGTTGAATTCTAAAATTGATTCCTTAAGCTTATACAAATGTGAAAATTGGACCCTCTAACTTACGATATTCGTAGAAACTGGACCTAAATAATAAAAAATGAACCATCAAACTTAAACAATTGTTACAATTTCTACGATTATGTGAGTTCGAGGGTGGGTCCAATTTTAACTTTTGTATAAGTTTGAGGGCTCAATTTTTACAAGTATAATTGCAACTACCACCGTACTTTTGGAGGTGGTTTTTGCAATTTGTCATTTTTTTTTTTTATTTGAGACAGATTTCAAAAAGTATTTTCAAAAAGCAAAAACAAAATGTATATAGATAAAGCAAACTTACCTACAAATACTTTTGTTGGTTTCAGACTAAAGGAAGGGTTCATGATGATGAGGCAATAGAGAAGATGTTGAATGATCTTTCGTTAATCAAAAAGTTTGAGTAG

mRNA sequence

ATGTCTGGAGAAGAAGAAGAAAATGCTGCAGAGCTTAAAATTGGGGATGAGTTTTTAAAAGCTAAGTGTTTAATGAATTGCGAAGTTTCTTTGATCCTTGAACACAAGTATGAGCAGCTTCAACAAATGGCCGAGGATCCAACAAATCAAATTTCTCAAGTGTTTGAGAAGTCATTGCAGTATGTGAAACGCTTTAGTCGCTATAAGAACCCTGATGCTGTTAGACAAGTCCGAGAAATTCTAAGCAGATACCAACTAGCTGAGTTTGAGCTATGTGTTCTTGGCAACCTTTGCCCTGAAACTGTAGAGGAAGCTATCTCCATAGTTCCATCTTTGAAGACTAAAGGAAGGGTTCATGATGATGAGGCAATAGAGAAGATGTTGAATGATCTTTCGTTAATCAAAAAGTTTGAGTAG

Coding sequence (CDS)

ATGTCTGGAGAAGAAGAAGAAAATGCTGCAGAGCTTAAAATTGGGGATGAGTTTTTAAAAGCTAAGTGTTTAATGAATTGCGAAGTTTCTTTGATCCTTGAACACAAGTATGAGCAGCTTCAACAAATGGCCGAGGATCCAACAAATCAAATTTCTCAAGTGTTTGAGAAGTCATTGCAGTATGTGAAACGCTTTAGTCGCTATAAGAACCCTGATGCTGTTAGACAAGTCCGAGAAATTCTAAGCAGATACCAACTAGCTGAGTTTGAGCTATGTGTTCTTGGCAACCTTTGCCCTGAAACTGTAGAGGAAGCTATCTCCATAGTTCCATCTTTGAAGACTAAAGGAAGGGTTCATGATGATGAGGCAATAGAGAAGATGTTGAATGATCTTTCGTTAATCAAAAAGTTTGAGTAG

Protein sequence

MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMAEDPTNQISQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAISIVPSLKTKGRVHDDEAIEKMLNDLSLIKKFE

Homology

[Close]

BLAST of Cla97C11G212250 vs. NCBI nr
Match: XP_008459458.1 (PREDICTED: DNA-directed RNA polymerase II subunit 4-like [Cucumis melo] >XP_008459459.1 PREDICTED: DNA-directed RNA polymerase II subunit 4-like [Cucumis melo])

HSP 1 Score: 266.9 bits (681), Expect = 3.7e-68
Identity = 136/138 (98.55%), Postives = 136/138 (98.55%), Query Frame = 0


Query: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMAEDPTNQISQVFEKSLQ 60
           MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQ AEDPTNQISQVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQISQVFEKSLQ 60

Query: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAISIVPSLKTKGRVHD 120
           YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEA SIVPSLKTKGRVHD
Sbjct: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEATSIVPSLKTKGRVHD 120

Query: 121 DEAIEKMLNDLSLIKKFE 139
           DEAIEKMLNDLSLIKKFE
Sbjct: 121 DEAIEKMLNDLSLIKKFE 138

[Close]

BLAST of Cla97C11G212250 vs. NCBI nr
Match: XP_022939401.1 (DNA-directed RNA polymerase II subunit 4-like [Cucurbita moschata] >XP_022939402.1 DNA-directed RNA polymerase II subunit 4-like [Cucurbita moschata] >XP_022993195.1 DNA-directed RNA polymerase II subunit 4-like [Cucurbita maxima] >XP_022993196.1 DNA-directed RNA polymerase II subunit 4-like [Cucurbita maxima] >XP_023549816.1 DNA-directed RNA polymerase II subunit 4-like [Cucurbita pepo subsp. pepo] >XP_023549818.1 DNA-directed RNA polymerase II subunit 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 266.9 bits (681), Expect = 3.7e-68
Identity = 134/138 (97.10%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMAEDPTNQISQVFEKSLQ 60
           MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQM+EDPTNQ+SQVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQ 60

Query: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAISIVPSLKTKGRVHD 120
           YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIS+VPSLKTKGR HD
Sbjct: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAISMVPSLKTKGRAHD 120

Query: 121 DEAIEKMLNDLSLIKKFE 139
           DEAIEKMLNDLSLIKKFE
Sbjct: 121 DEAIEKMLNDLSLIKKFE 138

[Close]

BLAST of Cla97C11G212250 vs. NCBI nr
Match: XP_004138390.1 (PREDICTED: DNA-directed RNA polymerase II subunit 4 [Cucumis sativus] >XP_008456795.1 PREDICTED: DNA-directed RNA polymerase II subunit 4 [Cucumis melo] >XP_011656444.1 PREDICTED: DNA-directed RNA polymerase II subunit 4 [Cucumis sativus] >KGN45845.1 hypothetical protein Csa_6G014650 [Cucumis sativus])

HSP 1 Score: 265.8 bits (678), Expect = 8.3e-68
Identity = 132/138 (95.65%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMAEDPTNQISQVFEKSLQ 60
           MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQM+EDPTNQ+SQVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQ 60

Query: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAISIVPSLKTKGRVHD 120
           YVKRFSRYKNPDAVRQVRE+LSRYQLAEFELCVLGNLCPETVEEAI++VPSLKTKGRVHD
Sbjct: 61  YVKRFSRYKNPDAVRQVREVLSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKTKGRVHD 120

Query: 121 DEAIEKMLNDLSLIKKFE 139
           DEAIEKMLNDLSLIK+FE
Sbjct: 121 DEAIEKMLNDLSLIKRFE 138

[Close]

BLAST of Cla97C11G212250 vs. NCBI nr
Match: XP_004141497.1 (PREDICTED: DNA-directed RNA polymerase II subunit 4-like [Cucumis sativus])

HSP 1 Score: 265.0 bits (676), Expect = 1.4e-67
Identity = 134/138 (97.10%), Postives = 136/138 (98.55%), Query Frame = 0


Query: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMAEDPTNQISQVFEKSLQ 60
           MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQ AEDPTNQ+SQVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQ 60

Query: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAISIVPSLKTKGRVHD 120
           YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEA SIVPSLKTKGRVH+
Sbjct: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEATSIVPSLKTKGRVHE 120

Query: 121 DEAIEKMLNDLSLIKKFE 139
           DEAIEKMLNDLSLIKKFE
Sbjct: 121 DEAIEKMLNDLSLIKKFE 138

[Close]

BLAST of Cla97C11G212250 vs. NCBI nr
Match: XP_022133507.1 (DNA-directed RNA polymerase II subunit 4 [Momordica charantia])

HSP 1 Score: 263.5 bits (672), Expect = 4.1e-67
Identity = 132/138 (95.65%), Postives = 136/138 (98.55%), Query Frame = 0


Query: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMAEDPTNQISQVFEKSLQ 60
           MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQM+EDP NQ+SQVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQ 60

Query: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAISIVPSLKTKGRVHD 120
           YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAI++VPSLKTKGR HD
Sbjct: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKTKGRAHD 120

Query: 121 DEAIEKMLNDLSLIKKFE 139
           DEAIEKMLNDLSLIKKFE
Sbjct: 121 DEAIEKMLNDLSLIKKFE 138

[Close]

BLAST of Cla97C11G212250 vs. TrEMBL
Match: tr|A0A1S3CA78|A0A1S3CA78_CUCME (DNA-directed RNA polymerase II subunit 4-like OS=Cucumis melo OX=3656 GN=LOC103498588 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 2.5e-68
Identity = 136/138 (98.55%), Postives = 136/138 (98.55%), Query Frame = 0


Query: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMAEDPTNQISQVFEKSLQ 60
           MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQ AEDPTNQISQVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQISQVFEKSLQ 60

Query: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAISIVPSLKTKGRVHD 120
           YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEA SIVPSLKTKGRVHD
Sbjct: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEATSIVPSLKTKGRVHD 120

Query: 121 DEAIEKMLNDLSLIKKFE 139
           DEAIEKMLNDLSLIKKFE
Sbjct: 121 DEAIEKMLNDLSLIKKFE 138

[Close]

BLAST of Cla97C11G212250 vs. TrEMBL
Match: tr|A0A1S3C4R9|A0A1S3C4R9_CUCME (DNA-directed RNA polymerase II subunit 4 OS=Cucumis melo OX=3656 GN=LOC103496636 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 5.5e-68
Identity = 132/138 (95.65%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMAEDPTNQISQVFEKSLQ 60
           MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQM+EDPTNQ+SQVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQ 60

Query: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAISIVPSLKTKGRVHD 120
           YVKRFSRYKNPDAVRQVRE+LSRYQLAEFELCVLGNLCPETVEEAI++VPSLKTKGRVHD
Sbjct: 61  YVKRFSRYKNPDAVRQVREVLSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKTKGRVHD 120

Query: 121 DEAIEKMLNDLSLIKKFE 139
           DEAIEKMLNDLSLIK+FE
Sbjct: 121 DEAIEKMLNDLSLIKRFE 138

[Close]

BLAST of Cla97C11G212250 vs. TrEMBL
Match: tr|A0A0A0K7V5|A0A0A0K7V5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014650 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 5.5e-68
Identity = 132/138 (95.65%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMAEDPTNQISQVFEKSLQ 60
           MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQM+EDPTNQ+SQVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQ 60

Query: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAISIVPSLKTKGRVHD 120
           YVKRFSRYKNPDAVRQVRE+LSRYQLAEFELCVLGNLCPETVEEAI++VPSLKTKGRVHD
Sbjct: 61  YVKRFSRYKNPDAVRQVREVLSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKTKGRVHD 120

Query: 121 DEAIEKMLNDLSLIKKFE 139
           DEAIEKMLNDLSLIK+FE
Sbjct: 121 DEAIEKMLNDLSLIKRFE 138

[Close]

BLAST of Cla97C11G212250 vs. TrEMBL
Match: tr|A0A2N9G2U2|A0A2N9G2U2_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21532 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 1.0e-66
Identity = 130/138 (94.20%), Postives = 136/138 (98.55%), Query Frame = 0


Query: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMAEDPTNQISQVFEKSLQ 60
           MSGEEEENAAELKIGDEFLKAKCLMNCEV+LILEHKYEQLQQM+EDP NQ+SQVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVALILEHKYEQLQQMSEDPMNQVSQVFEKSLQ 60

Query: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAISIVPSLKTKGRVHD 120
           YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAI++VPS+KTKGR HD
Sbjct: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTKGRAHD 120

Query: 121 DEAIEKMLNDLSLIKKFE 139
           DEAIEKMLNDLSLIKKFE
Sbjct: 121 DEAIEKMLNDLSLIKKFE 138

[Close]

BLAST of Cla97C11G212250 vs. TrEMBL
Match: tr|A0A2P4HMF5|A0A2P4HMF5_QUESU (Dna-directed rna polymerase ii subunit 4 OS=Quercus suber OX=58331 GN=CFP56_06018 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 1.0e-66
Identity = 130/138 (94.20%), Postives = 136/138 (98.55%), Query Frame = 0


Query: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMAEDPTNQISQVFEKSLQ 60
           MSGEEEENAAELKIGDEFLKAKCLMNCEV+LILEHKYEQLQQM+EDP NQ+SQVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVALILEHKYEQLQQMSEDPLNQVSQVFEKSLQ 60

Query: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAISIVPSLKTKGRVHD 120
           YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAI++VPS+KTKGR HD
Sbjct: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTKGRAHD 120

Query: 121 DEAIEKMLNDLSLIKKFE 139
           DEAIEKMLNDLSLIKKFE
Sbjct: 121 DEAIEKMLNDLSLIKKFE 138

[Close]

BLAST of Cla97C11G212250 vs. Swiss-Prot
Match: sp|O48890|NRPB4_ARATH (DNA-directed RNA polymerase II subunit 4 OS=Arabidopsis thaliana OX=3702 GN=NRPB4 PE=1 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 4.8e-67
Identity = 125/138 (90.58%), Postives = 135/138 (97.83%), Query Frame = 0


Query: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMAEDPTNQISQVFEKSLQ 60
           MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHK+EQLQQ++EDP NQ+SQVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKFEQLQQISEDPMNQVSQVFEKSLQ 60

Query: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAISIVPSLKTKGRVHD 120
           YVKRFSRYKNPDAVRQVREILSR+QL EFELCVLGNLCPETVEEA+++VPSLKTKGR HD
Sbjct: 61  YVKRFSRYKNPDAVRQVREILSRHQLTEFELCVLGNLCPETVEEAVAMVPSLKTKGRAHD 120

Query: 121 DEAIEKMLNDLSLIKKFE 139
           DEAIEKMLNDLSL+K+FE
Sbjct: 121 DEAIEKMLNDLSLVKRFE 138

[Close]

BLAST of Cla97C11G212250 vs. Swiss-Prot
Match: sp|O15514|RPB4_HUMAN (DNA-directed RNA polymerase II subunit RPB4 OS=Homo sapiens OX=9606 GN=POLR2D PE=1 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.8e-21
Identity = 57/137 (41.61%), Postives = 94/137 (68.61%), Query Frame = 0


Query: 2   SGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMAEDPTNQISQVFEKSLQY 61
           +G+ EE+A++L    EF  A+ L+N EV ++LEH+ +Q  + AED   ++S+VF K+L Y
Sbjct: 10  AGDVEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQ-NESAED-EQELSEVFMKTLNY 69

Query: 62  VKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAISIVPSLKTKGRVHDD 121
             RFSR+KN + +  VR +L + +L +FEL  L NLCPET EE+ +++PSL  +GR  D+
Sbjct: 70  TARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSL--EGRFEDE 129

Query: 122 EAIEKMLNDLSLIKKFE 139
           E ++++L+D+   + F+
Sbjct: 130 E-LQQILDDIQTKRSFQ 141

[Close]

BLAST of Cla97C11G212250 vs. Swiss-Prot
Match: sp|Q9D7M8|RPB4_MOUSE (DNA-directed RNA polymerase II subunit RPB4 OS=Mus musculus OX=10090 GN=Polr2d PE=1 SV=2)

HSP 1 Score: 103.6 bits (257), Expect = 1.8e-21
Identity = 57/137 (41.61%), Postives = 94/137 (68.61%), Query Frame = 0


Query: 2   SGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMAEDPTNQISQVFEKSLQY 61
           +G+ EE+A++L    EF  A+ L+N EV ++LEH+ +Q  + AED   ++S+VF K+L Y
Sbjct: 10  AGDVEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQ-NESAED-EQELSEVFMKTLNY 69

Query: 62  VKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAISIVPSLKTKGRVHDD 121
             RFSR+KN + +  VR +L + +L +FEL  L NLCPET EE+ +++PSL  +GR  D+
Sbjct: 70  TARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSL--EGRFEDE 129

Query: 122 EAIEKMLNDLSLIKKFE 139
           E ++++L+D+   + F+
Sbjct: 130 E-LQQILDDIQTKRSFQ 141

[Close]

BLAST of Cla97C11G212250 vs. Swiss-Prot
Match: sp|Q54S04|RPB4_DICDI (DNA-directed RNA polymerase II subunit rpb4 OS=Dictyostelium discoideum OX=44689 GN=polr2d PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.9e-19
Identity = 58/147 (39.46%), Postives = 90/147 (61.22%), Query Frame = 0


Query: 4   EEEENAAELKIGDEFLKAKCLMNCEVSLILEHK----------YEQ---LQQMAEDPTNQ 63
           +EEE+   LK   +   AK L+N EV+++LEH+          + Q   L  +  +  N 
Sbjct: 12  QEEEDLTTLKFPRDLKDAKFLLNSEVAILLEHRKGISESEGTEFPQNTLLIHLYYNSIND 71

Query: 64  ISQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAISIVP 123
           I + F K+L Y ++FSRYKN  +++QVR  LS+  L EFE+  L NLCPE  +EA S++P
Sbjct: 72  IIRTFHKTLAYAEKFSRYKNKTSIKQVRTALSKQNLEEFEIASLANLCPEISDEAKSLIP 131

Query: 124 SLKTKGRVHDDEAIEKMLNDLSLIKKF 138
           SLK   ++ DDE ++ +L++LS ++KF
Sbjct: 132 SLK---KMEDDE-LQAILDELSNLRKF 154

[Close]

BLAST of Cla97C11G212250 vs. Swiss-Prot
Match: sp|Q9VEA5|RPB4_DROME (DNA-directed RNA polymerase II subunit Rpb4 OS=Drosophila melanogaster OX=7227 GN=Rpb4 PE=2 SV=5)

HSP 1 Score: 86.7 bits (213), Expect = 2.3e-16
Identity = 47/126 (37.30%), Postives = 80/126 (63.49%), Query Frame = 0


Query: 6   EENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMAEDPTNQISQVFEKSLQYVKRF 65
           +E+AA+L+   EF  A+ L+  EV ++L+H+  + Q  + D   + S+VF K+  Y   F
Sbjct: 11  DEDAADLQFPKEFENAETLLISEVHMLLDHR--KRQNESADEEQEFSEVFMKTYAYTDSF 70

Query: 66  SRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAISIVPSLKTKGRVHDDEAIE 125
            ++KN + +   R +L + +L +FEL  LGNLCPE  EEA +++PSL  +GR  D+E + 
Sbjct: 71  RKFKNKETIMSARSLLMQKKLHKFELAALGNLCPEAPEEAKALIPSL--EGRFEDEE-LR 130

Query: 126 KMLNDL 132
           ++L+D+
Sbjct: 131 QILDDI 131

[Close]

BLAST of Cla97C11G212250 vs. TAIR10
Match: AT5G09920.1 (RNA polymerase II, Rpb4, core protein)

HSP 1 Score: 255.0 bits (650), Expect = 2.7e-68
Identity = 125/138 (90.58%), Postives = 135/138 (97.83%), Query Frame = 0


Query: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMAEDPTNQISQVFEKSLQ 60
           MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHK+EQLQQ++EDP NQ+SQVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKFEQLQQISEDPMNQVSQVFEKSLQ 60

Query: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAISIVPSLKTKGRVHD 120
           YVKRFSRYKNPDAVRQVREILSR+QL EFELCVLGNLCPETVEEA+++VPSLKTKGR HD
Sbjct: 61  YVKRFSRYKNPDAVRQVREILSRHQLTEFELCVLGNLCPETVEEAVAMVPSLKTKGRAHD 120

Query: 121 DEAIEKMLNDLSLIKKFE 139
           DEAIEKMLNDLSL+K+FE
Sbjct: 121 DEAIEKMLNDLSLVKRFE 138

[Close]

BLAST of Cla97C11G212250 vs. TAIR10
Match: AT4G15950.1 (RNA polymerase II, Rpb4, core protein)

HSP 1 Score: 85.5 bits (210), Expect = 2.8e-17
Identity = 45/118 (38.14%), Postives = 76/118 (64.41%), Query Frame = 0


Query: 21  AKCLMNCEVSLILEHKYEQLQQMAEDPTNQISQVFEKSLQYVKRFSRYKNPDAVRQVREI 80
           A+C+M+CE   IL+    QL  ++EDP+ +I   ++++L YV+    Y NP +VR+V E 
Sbjct: 89  AECMMDCEAFQILDGIKGQLVGLSEDPSIKIPVSYDRALAYVESCVHYTNPQSVRKVLEP 148

Query: 81  LSRYQLAEFELCVLGNLCPETVEEAISIVPSLKTKGRVHDDEAIEKMLNDLSLIKKFE 139
           L  Y +++ E+CV+ N   E+V+E ++ +PSLKTK  V  ++ ++  L +LS +KK E
Sbjct: 149 LKTYGISDGEMCVIANASSESVDEVLAFIPSLKTKKEV-INQPLQDALEELSKLKKSE 205

The following BLAST results are available for this feature:

BLAST of Cla97C11G212250 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008459458.1	3.7e-68	98.55	PREDICTED: DNA-directed RNA polymerase II subunit 4-like [Cucumis melo] >XP_0084...	[more]
XP_022939401.1	3.7e-68	97.10	DNA-directed RNA polymerase II subunit 4-like [Cucurbita moschata] >XP_022939402...	[more]
XP_004138390.1	8.3e-68	95.65	PREDICTED: DNA-directed RNA polymerase II subunit 4 [Cucumis sativus] >XP_008456...	[more]
XP_004141497.1	1.4e-67	97.10	PREDICTED: DNA-directed RNA polymerase II subunit 4-like [Cucumis sativus]	[more]
XP_022133507.1	4.1e-67	95.65	DNA-directed RNA polymerase II subunit 4 [Momordica charantia]	[more]

BLAST of Cla97C11G212250 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CA78\|A0A1S3CA78_CUCME	2.5e-68	98.55	DNA-directed RNA polymerase II subunit 4-like OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
tr\|A0A1S3C4R9\|A0A1S3C4R9_CUCME	5.5e-68	95.65	DNA-directed RNA polymerase II subunit 4 OS=Cucumis melo OX=3656 GN=LOC103496636...	[more]
tr\|A0A0A0K7V5\|A0A0A0K7V5_CUCSA	5.5e-68	95.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014650 PE=4 SV=1	[more]
tr\|A0A2N9G2U2\|A0A2N9G2U2_FAGSY	1.0e-66	94.20	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21532 PE=4 SV=1	[more]
tr\|A0A2P4HMF5\|A0A2P4HMF5_QUESU	1.0e-66	94.20	Dna-directed rna polymerase ii subunit 4 OS=Quercus suber OX=58331 GN=CFP56_0601...	[more]

BLAST of Cla97C11G212250 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O48890\|NRPB4_ARATH	4.8e-67	90.58	DNA-directed RNA polymerase II subunit 4 OS=Arabidopsis thaliana OX=3702 GN=NRPB...	[more]
sp\|O15514\|RPB4_HUMAN	1.8e-21	41.61	DNA-directed RNA polymerase II subunit RPB4 OS=Homo sapiens OX=9606 GN=POLR2D PE...	[more]
sp\|Q9D7M8\|RPB4_MOUSE	1.8e-21	41.61	DNA-directed RNA polymerase II subunit RPB4 OS=Mus musculus OX=10090 GN=Polr2d P...	[more]
sp\|Q54S04\|RPB4_DICDI	2.9e-19	39.46	DNA-directed RNA polymerase II subunit rpb4 OS=Dictyostelium discoideum OX=44689...	[more]
sp\|Q9VEA5\|RPB4_DROME	2.3e-16	37.30	DNA-directed RNA polymerase II subunit Rpb4 OS=Drosophila melanogaster OX=7227 G...	[more]

BLAST of Cla97C11G212250 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G09920.1	2.7e-68	90.58	RNA polymerase II, Rpb4, core protein	[more]
AT4G15950.1	2.8e-17	38.14	RNA polymerase II, Rpb4, core protein	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0000166	nucleotide binding
GO:0003824	catalytic activity

Vocabulary: **Biological Process**
Term	Definition
GO:0044237	cellular metabolic process
GO:0006352	DNA-templated transcription, initiation

Vocabulary: **Cellular Component**
Term	Definition
GO:0030880	RNA polymerase complex

Vocabulary: **INTERPRO**
Term	Definition
IPR010997	HRDC-like_sf
IPR038324	Rpb4/RPC9_sf
IPR005574	RPB4/RPC9
IPR006590	RNA_pol_Rpb4/RPC9_core

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0006366	transcription from RNA polymerase II promoter
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
biological_process	GO:0034402	recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex
biological_process	GO:0045948	positive regulation of translational initiation
biological_process	GO:0000288	nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
biological_process	GO:0031990	mRNA export from nucleus in response to heat stress
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0006144	purine nucleobase metabolic process
cellular_component	GO:0005665	DNA-directed RNA polymerase II, core complex
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0055029	nuclear DNA-directed RNA polymerase complex
cellular_component	GO:0000932	cytoplasmic mRNA processing body
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0030880	RNA polymerase complex
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003899	DNA-directed RNA polymerase activity
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0003697	single-stranded DNA binding
molecular_function	GO:0003727	single-stranded RNA binding
molecular_function	GO:0031369	translation initiation factor binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C11G212250.1	Cla97C11G212250.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006590	RNA polymerase Rpb4/RPC9, core	SMART	SM00657	rpol4neu2	coord: 16..138 e-value: 5.0E-56 score: 202.1
IPR005574	RNA polymerase subunit RPB4/RPC9	PFAM	PF03874	RNA_pol_Rpb4	coord: 23..132 e-value: 2.1E-23 score: 82.9
IPR038324	Rpb4/RPC9 superfamily	GENE3D	G3DSA:1.20.1250.40		coord: 2..138 e-value: 8.0E-46 score: 157.1
None	No IPR available	PANTHER	PTHR21297	DNA-DIRECTED RNA POLYMERASE II	coord: 3..137
IPR010997	HRDC-like superfamily	SUPERFAMILY	SSF47819	HRDC-like	coord: 3..136

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C11G212250	Cla016457	Watermelon (97103) v1	wmwmbB361
Cla97C11G212250	Csa5G643990	Cucumber (Chinese Long) v2	cuwmbB358
Cla97C11G212250	MELO3C022087	Melon (DHL92) v3.5.1	mewmbB016
Cla97C11G212250	ClCG11G005330	Watermelon (Charleston Gray)	wcgwmbB065
Cla97C11G212250	CSPI05G29990	Wild cucumber (PI 183967)	cpiwmbB374
Cla97C11G212250	Cucsa.238130	Cucumber (Gy14) v1	cgywmbB418
Cla97C11G212250	CmaCh04G028590	Cucurbita maxima (Rimu)	cmawmbB738
Cla97C11G212250	CmoCh04G029870	Cucurbita moschata (Rifu)	cmowmbB711
Cla97C11G212250	Lsi03G002270	Bottle gourd (USVL1VR-Ls)	lsiwmbB222
Cla97C11G212250	CsGy5G029380	Cucumber (Gy14) v2	cgybwmbB341
Cla97C11G212250	MELO3C022087.2	Melon (DHL92) v3.6.1	medwmbB014
Cla97C11G212250	Carg05935	Silver-seed gourd	carwmbB0019
Cla97C11G212250	CsaV3_5G039120	Cucumber (Chinese Long) v3	cucwmbB374
Cla97C11G212250	Bhi06G000082	Wax gourd	wgowmbB118
Cla97C11G212250	Bhi04G001820	Wax gourd	wgowmbB290

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C11G212250	Silver-seed gourd	carwmbB0015
Cla97C11G212250	Silver-seed gourd	carwmbB0269
Cla97C11G212250	Cucurbita maxima (Rimu)	cmawmbB296
Cla97C11G212250	Cucurbita maxima (Rimu)	cmawmbB724
Cla97C11G212250	Cucurbita moschata (Rifu)	cmowmbB278
Cla97C11G212250	Cucurbita moschata (Rifu)	cmowmbB697
Cla97C11G212250	Melon (DHL92) v3.6.1	medwmbB013
Cla97C11G212250	Melon (DHL92) v3.5.1	mewmbB015