Cla97C11G210670 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C11G210670
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Beta-D-glucosidase
Location	Cla97Chr11 : 4023043 .. 4023321 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAAGGTGACACTGCTTTTACTCTGTTGCTGGGCGGCTTTGGTGGTTGCTGATGAAGATTATGTCAAGTATAAGGACCCGATACAACCGCTTAACGTCCGGATCAAGGATCTAATGGATAGAATGACTCTAGCAGGGAAGATTGGGCAGATGGCACAGTTGGATCGTTCGGTTGTAACACCAGAGATCATGAGAGATTACTCCATTGGCAATGTGCTTAGTGTCACAATCGCTCACTTCAGAATACGGGACGGCGATTGTGCGGCACTGCTCTAA

mRNA sequence

ATGATGAAGGTGACACTGCTTTTACTCTGTTGCTGGGCGGCTTTGGTGGTTGCTGATGAAGATTATGTCAAGTATAAGGACCCGATACAACCGCTTAACGTCCGGATCAAGGATCTAATGGATAGAATGACTCTAGCAGGGAAGATTGGGCAGATGGCACAGTTGGATCGTTCGGTTGTAACACCAGAGATCATGAGAGATTACTCCATTGGCAATGTGCTTAGTGTCACAATCGCTCACTTCAGAATACGGGACGGCGATTGTGCGGCACTGCTCTAA

Coding sequence (CDS)

ATGATGAAGGTGACACTGCTTTTACTCTGTTGCTGGGCGGCTTTGGTGGTTGCTGATGAAGATTATGTCAAGTATAAGGACCCGATACAACCGCTTAACGTCCGGATCAAGGATCTAATGGATAGAATGACTCTAGCAGGGAAGATTGGGCAGATGGCACAGTTGGATCGTTCGGTTGTAACACCAGAGATCATGAGAGATTACTCCATTGGCAATGTGCTTAGTGTCACAATCGCTCACTTCAGAATACGGGACGGCGATTGTGCGGCACTGCTCTAA

Protein sequence

MMKVTLLLLCCWAALVVADEDYVKYKDPIQPLNVRIKDLMDRMTLAGKIGQMAQLDRSVVTPEIMRDYSIGNVLSVTIAHFRIRDGDCAALL

Homology

[Close]

BLAST of Cla97C11G210670 vs. NCBI nr
Match: XP_016902614.1 (PREDICTED: LOW QUALITY PROTEIN: lysosomal beta glucosidase-like [Cucumis melo])

HSP 1 Score: 128.3 bits (321), Expect = 1.4e-26
Identity = 60/74 (81.08%), Postives = 67/74 (90.54%), Query Frame = 0


Query: 2  MKVTLLLLCCWAALVVADEDYVKYKDPIQPLNVRIKDLMDRMTLAGKIGQMAQLDRSVVT 61
          MKV ++LLCCWAALV  DEDYV YKDPIQPLN+RIKDLMDRMTLA K+GQMAQLD S +T
Sbjct: 1  MKVMVVLLCCWAALVAVDEDYVMYKDPIQPLNIRIKDLMDRMTLADKVGQMAQLDSSAIT 60

Query: 62 PEIMRDYSIGNVLS 76
          PEI+RDYSIG+VLS
Sbjct: 61 PEIIRDYSIGSVLS 74

[Close]

BLAST of Cla97C11G210670 vs. NCBI nr
Match: XP_022943425.1 (uncharacterized protein LOC111448193 [Cucurbita moschata])

HSP 1 Score: 123.2 bits (308), Expect = 4.5e-25
Identity = 63/80 (78.75%), Postives = 68/80 (85.00%), Query Frame = 0


Query: 1  MMKVT-----LLLLCCWAALVVADEDYVKYKDPIQPLNVRIKDLMDRMTLAGKIGQMAQL 60
          MMKVT     +LLLCCW AL  A ED+VKYKDP QPLN+RIKDLMDRMTLA KIGQM QL
Sbjct: 1  MMKVTVASILVLLLCCWPALAAAREDHVKYKDPAQPLNIRIKDLMDRMTLAEKIGQMTQL 60

Query: 61 DRSVVTPEIMRDYSIGNVLS 76
          DRSVVTPEI+RDYSIG+VLS
Sbjct: 61 DRSVVTPEIVRDYSIGSVLS 80

[Close]

BLAST of Cla97C11G210670 vs. NCBI nr
Match: XP_023512240.1 (uncharacterized protein LOC111777028 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 118.2 bits (295), Expect = 1.4e-23
Identity = 62/80 (77.50%), Postives = 67/80 (83.75%), Query Frame = 0


Query: 1  MMKVT-----LLLLCCWAALVVADEDYVKYKDPIQPLNVRIKDLMDRMTLAGKIGQMAQL 60
          MMKVT     +LLLC W AL  A +D+VKYKDP QPLNVRIKDLMDRMTLA KIGQM QL
Sbjct: 1  MMKVTVSSILVLLLCGWPALAAAHDDHVKYKDPAQPLNVRIKDLMDRMTLAEKIGQMTQL 60

Query: 61 DRSVVTPEIMRDYSIGNVLS 76
          DRSVVTPEI+RDYSIG+VLS
Sbjct: 61 DRSVVTPEIVRDYSIGSVLS 80

[Close]

BLAST of Cla97C11G210670 vs. NCBI nr
Match: XP_002523937.1 (uncharacterized protein LOC8281990 [Ricinus communis] >EEF38424.1 hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis])

HSP 1 Score: 107.1 bits (266), Expect = 3.3e-20
Identity = 53/69 (76.81%), Postives = 61/69 (88.41%), Query Frame = 0


Query: 7  LLLCCWAALVVADEDYVKYKDPIQPLNVRIKDLMDRMTLAGKIGQMAQLDRSVVTPEIMR 66
          L+LCC+AA   AD +Y+KYKDP QPLNVRI+D+M RMTLA KIGQM QLDRSVVTPEIMR
Sbjct: 13 LVLCCFAA---ADAEYLKYKDPSQPLNVRIRDVMKRMTLAEKIGQMVQLDRSVVTPEIMR 72

Query: 67 DYSIGNVLS 76
          DYSIG++LS
Sbjct: 73 DYSIGSILS 78

[Close]

BLAST of Cla97C11G210670 vs. NCBI nr
Match: XP_022146225.1 (uncharacterized protein LOC111015489 [Momordica charantia])

HSP 1 Score: 104.4 bits (259), Expect = 2.1e-19
Identity = 50/58 (86.21%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 18 ADEDYVKYKDPIQPLNVRIKDLMDRMTLAGKIGQMAQLDRSVVTPEIMRDYSIGNVLS 76
          AD DYVKYKDP QPLN+RIKDLMDRMTLA KIGQM QLDR+VVTPEIMRDYS+G+VLS
Sbjct: 23 ADGDYVKYKDPGQPLNIRIKDLMDRMTLAEKIGQMTQLDRTVVTPEIMRDYSLGSVLS 80

[Close]

BLAST of Cla97C11G210670 vs. TrEMBL
Match: tr|A0A1S4E304|A0A1S4E304_CUCME (LOW QUALITY PROTEIN: lysosomal beta glucosidase-like OS=Cucumis melo OX=3656 GN=LOC103499742 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 9.2e-27
Identity = 60/74 (81.08%), Postives = 67/74 (90.54%), Query Frame = 0


Query: 2  MKVTLLLLCCWAALVVADEDYVKYKDPIQPLNVRIKDLMDRMTLAGKIGQMAQLDRSVVT 61
          MKV ++LLCCWAALV  DEDYV YKDPIQPLN+RIKDLMDRMTLA K+GQMAQLD S +T
Sbjct: 1  MKVMVVLLCCWAALVAVDEDYVMYKDPIQPLNIRIKDLMDRMTLADKVGQMAQLDSSAIT 60

Query: 62 PEIMRDYSIGNVLS 76
          PEI+RDYSIG+VLS
Sbjct: 61 PEIIRDYSIGSVLS 74

[Close]

BLAST of Cla97C11G210670 vs. TrEMBL
Match: tr|B9SD68|B9SD68_RICCO (Hydrolase, hydrolyzing O-glycosyl compounds, putative OS=Ricinus communis OX=3988 GN=RCOM_1162600 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.2e-20
Identity = 53/69 (76.81%), Postives = 61/69 (88.41%), Query Frame = 0


Query: 7  LLLCCWAALVVADEDYVKYKDPIQPLNVRIKDLMDRMTLAGKIGQMAQLDRSVVTPEIMR 66
          L+LCC+AA   AD +Y+KYKDP QPLNVRI+D+M RMTLA KIGQM QLDRSVVTPEIMR
Sbjct: 13 LVLCCFAA---ADAEYLKYKDPSQPLNVRIRDVMKRMTLAEKIGQMVQLDRSVVTPEIMR 72

Query: 67 DYSIGNVLS 76
          DYSIG++LS
Sbjct: 73 DYSIGSILS 78

[Close]

BLAST of Cla97C11G210670 vs. TrEMBL
Match: tr|A0A251NQP2|A0A251NQP2_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G150200 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.6e-18
Identity = 49/76 (64.47%), Postives = 61/76 (80.26%), Query Frame = 0


Query: 1  MMKVTLLLLCCWAALVV-ADEDYVKYKDPIQPLNVRIKDLMDRMTLAGKIGQMAQLDRSV 60
          ++ V LL LCCW A++   + +Y+ YKDP +P+N+RIKDLMDRMTLA KIGQM QLDR  
Sbjct: 8  VLLVGLLCLCCWEAMITKVEAEYMAYKDPNKPINIRIKDLMDRMTLAEKIGQMTQLDRQN 67

Query: 61 VTPEIMRDYSIGNVLS 76
          VT EIMRDYSIG++LS
Sbjct: 68 VTAEIMRDYSIGSLLS 83

[Close]

BLAST of Cla97C11G210670 vs. TrEMBL
Match: tr|A0A251NQP7|A0A251NQP7_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G150400 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.0e-17
Identity = 49/72 (68.06%), Postives = 56/72 (77.78%), Query Frame = 0


Query: 4  VTLLLLCCWAALVVADEDYVKYKDPIQPLNVRIKDLMDRMTLAGKIGQMAQLDRSVVTPE 63
          V LL LCCW A+  A  +Y+ YKDP QPLN RIKDLM RMTL  KIGQM QLDR+ VT E
Sbjct: 12 VGLLWLCCWGAMARAGAEYMAYKDPKQPLNRRIKDLMGRMTLEEKIGQMTQLDRANVTAE 71

Query: 64 IMRDYSIGNVLS 76
          IMRD+S+G+VLS
Sbjct: 72 IMRDFSLGSVLS 83

[Close]

BLAST of Cla97C11G210670 vs. TrEMBL
Match: tr|M5W6P3|M5W6P3_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa020836mg PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.0e-17
Identity = 49/72 (68.06%), Postives = 56/72 (77.78%), Query Frame = 0


Query: 4  VTLLLLCCWAALVVADEDYVKYKDPIQPLNVRIKDLMDRMTLAGKIGQMAQLDRSVVTPE 63
          V LL LCCW A+  A  +Y+ YKDP QPLN RIKDLM RMTL  KIGQM QLDR+ VT E
Sbjct: 11 VGLLWLCCWGAMARAGAEYMAYKDPKQPLNRRIKDLMGRMTLEEKIGQMTQLDRANVTAE 70

Query: 64 IMRDYSIGNVLS 76
          IMRD+S+G+VLS
Sbjct: 71 IMRDFSLGSVLS 82

[Close]

BLAST of Cla97C11G210670 vs. TAIR10
Match: AT5G20950.1 (Glycosyl hydrolase family protein)

HSP 1 Score: 87.4 bits (215), Expect = 4.9e-18
Identity = 44/70 (62.86%), Postives = 54/70 (77.14%), Query Frame = 0


Query: 6  LLLLCCWAALVVADEDYVKYKDPIQPLNVRIKDLMDRMTLAGKIGQMAQLDRSVVTPEIM 65
          L+LLCC   +V A E  +KYKDP QPL  RI+DLM+RMTL  KIGQM Q++RSV TPE+M
Sbjct: 10 LMLLCC---IVAAAEGTLKYKDPKQPLGARIRDLMNRMTLQEKIGQMVQIERSVATPEVM 69

Query: 66 RDYSIGNVLS 76
          + Y IG+VLS
Sbjct: 70 KKYFIGSVLS 76

[Close]

BLAST of Cla97C11G210670 vs. TAIR10
Match: AT5G04885.1 (Glycosyl hydrolase family protein)

HSP 1 Score: 75.5 bits (184), Expect = 1.9e-14
Identity = 39/70 (55.71%), Postives = 47/70 (67.14%), Query Frame = 0


Query: 6  LLLLCCWAALVVADEDYVKYKDPIQPLNVRIKDLMDRMTLAGKIGQMAQLDRSVVTPEIM 65
          LL +C W      D +Y+ YKDP Q ++ R+ DL  RMTL  KIGQM Q+DRSV T  IM
Sbjct: 12 LLWMCMWVC-CYGDGEYLLYKDPKQTVSDRVADLFGRMTLEEKIGQMVQIDRSVATVNIM 71

Query: 66 RDYSIGNVLS 76
          RDY IG+VLS
Sbjct: 72 RDYFIGSVLS 80

[Close]

BLAST of Cla97C11G210670 vs. TAIR10
Match: AT5G20940.1 (Glycosyl hydrolase family protein)

HSP 1 Score: 71.2 bits (173), Expect = 3.6e-13
Identity = 37/70 (52.86%), Postives = 45/70 (64.29%), Query Frame = 0


Query: 6  LLLLCCWAALVVADEDYVKYKDPIQPLNVRIKDLMDRMTLAGKIGQMAQLDRSVVTPEIM 65
          LLLLCC  A         KYKDP +PL VRIK+LM  MTL  KIGQM Q++R   T E+M
Sbjct: 13 LLLLCCTVAANKVPLANAKYKDPKEPLGVRIKNLMSHMTLEEKIGQMVQVERVNATTEVM 72

Query: 66 RDYSIGNVLS 76
          + Y +G+V S
Sbjct: 73 QKYFVGSVFS 82

[Close]

BLAST of Cla97C11G210670 vs. TAIR10
Match: AT3G47050.1 (Glycosyl hydrolase family protein)

HSP 1 Score: 61.2 bits (147), Expect = 3.8e-10
Identity = 29/60 (48.33%), Postives = 43/60 (71.67%), Query Frame = 0


Query: 16 VVADEDYVKYKDPIQPLNVRIKDLMDRMTLAGKIGQMAQLDRSVVTPEIMRDYSIGNVLS 75
          +V +E    YK+   P+  R+KDL+ RMTLA KIGQM  ++RSV +  ++RD+SIG+VL+
Sbjct: 1  MVDNEKSYVYKNREAPVEARVKDLLSRMTLAEKIGQMTLIERSVASEAVIRDFSIGSVLN 60

[Close]

BLAST of Cla97C11G210670 vs. TAIR10
Match: AT3G62710.1 (Glycosyl hydrolase family protein)

HSP 1 Score: 60.5 bits (145), Expect = 6.4e-10
Identity = 33/82 (40.24%), Postives = 45/82 (54.88%), Query Frame = 0


Query: 4  VTLLLLCCWAALVVADEDYVKYKDPIQPLNVRIKDLMDRMTLAGKIGQMAQLDR------ 63
          + +L    +     AD  Y+KYKDP   +  R++DL+ RMTL  K+GQM Q+DR      
Sbjct: 17 IVILFAGRYGEATAADRGYIKYKDPKVAVEERVEDLLIRMTLPEKLGQMCQIDRFNFSQV 76

Query: 64 ----SVVTPEIMRDYSIGNVLS 76
              + V PEI   Y IG+VLS
Sbjct: 77 TGGVATVVPEIFTKYMIGSVLS 98

The following BLAST results are available for this feature:

BLAST of Cla97C11G210670 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016902614.1	1.4e-26	81.08	PREDICTED: LOW QUALITY PROTEIN: lysosomal beta glucosidase-like [Cucumis melo]	[more]
XP_022943425.1	4.5e-25	78.75	uncharacterized protein LOC111448193 [Cucurbita moschata]	[more]
XP_023512240.1	1.4e-23	77.50	uncharacterized protein LOC111777028 [Cucurbita pepo subsp. pepo]	[more]
XP_002523937.1	3.3e-20	76.81	uncharacterized protein LOC8281990 [Ricinus communis] >EEF38424.1 hydrolase, hyd...	[more]
XP_022146225.1	2.1e-19	86.21	uncharacterized protein LOC111015489 [Momordica charantia]	[more]

BLAST of Cla97C11G210670 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E304\|A0A1S4E304_CUCME	9.2e-27	81.08	LOW QUALITY PROTEIN: lysosomal beta glucosidase-like OS=Cucumis melo OX=3656 GN=...	[more]
tr\|B9SD68\|B9SD68_RICCO	2.2e-20	76.81	Hydrolase, hydrolyzing O-glycosyl compounds, putative OS=Ricinus communis OX=398...	[more]
tr\|A0A251NQP2\|A0A251NQP2_PRUPE	1.6e-18	64.47	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G150200 PE=4 SV=1	[more]
tr\|A0A251NQP7\|A0A251NQP7_PRUPE	1.0e-17	68.06	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G150400 PE=4 SV=1	[more]
tr\|M5W6P3\|M5W6P3_PRUPE	1.0e-17	68.06	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa020836mg PE=4 SV=1	[more]

BLAST of Cla97C11G210670 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C11G210670 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G20950.1	4.9e-18	62.86	Glycosyl hydrolase family protein	[more]
AT5G04885.1	1.9e-14	55.71	Glycosyl hydrolase family protein	[more]
AT5G20940.1	3.6e-13	52.86	Glycosyl hydrolase family protein	[more]
AT3G47050.1	3.8e-10	48.33	Glycosyl hydrolase family protein	[more]
AT3G62710.1	6.4e-10	40.24	Glycosyl hydrolase family protein	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds

Vocabulary: **Biological Process**
Term	Definition
GO:0005975	carbohydrate metabolic process

Vocabulary: **INTERPRO**
Term	Definition
IPR017853	Glycoside_hydrolase_SF
IPR036962	Glyco_hydro_3_N_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0006468	protein phosphorylation
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008422	beta-glucosidase activity
molecular_function	GO:0004672	protein kinase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C11G210670.1	Cla97C11G210670.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036962	Glycoside hydrolase, family 3, N-terminal domain superfamily	GENE3D	G3DSA:3.20.20.300		coord: 18..89 e-value: 3.5E-12 score: 47.8
None	No IPR available	PANTHER	PTHR30620:SF35	GLYCOSYL HYDROLASE FAMILY PROTEIN	coord: 3..75
None	No IPR available	PANTHER	PTHR30620	PERIPLASMIC BETA-GLUCOSIDASE-RELATED	coord: 3..75
IPR017853	Glycoside hydrolase superfamily	SUPERFAMILY	SSF51445	(Trans)glycosidases	coord: 23..77

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C11G210670	Cla016604	Watermelon (97103) v1	wmwmbB361

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C11G210670	Watermelon (97103) v2	wmbwmbB065
Cla97C11G210670	Silver-seed gourd	carwmbB0311
Cla97C11G210670	Silver-seed gourd	carwmbB0323
Cla97C11G210670	Silver-seed gourd	carwmbB0454
Cla97C11G210670	Silver-seed gourd	carwmbB0993
Cla97C11G210670	Cucumber (Gy14) v2	cgybwmbB105
Cla97C11G210670	Cucumber (Gy14) v2	cgybwmbB492
Cla97C11G210670	Cucumber (Gy14) v1	cgywmbB150
Cla97C11G210670	Cucumber (Gy14) v1	cgywmbB646
Cla97C11G210670	Cucurbita maxima (Rimu)	cmawmbB457
Cla97C11G210670	Cucurbita maxima (Rimu)	cmawmbB526
Cla97C11G210670	Cucurbita maxima (Rimu)	cmawmbB567
Cla97C11G210670	Cucurbita maxima (Rimu)	cmawmbB613
Cla97C11G210670	Cucurbita moschata (Rifu)	cmowmbB438
Cla97C11G210670	Cucurbita moschata (Rifu)	cmowmbB506
Cla97C11G210670	Cucurbita moschata (Rifu)	cmowmbB544
Cla97C11G210670	Cucurbita moschata (Rifu)	cmowmbB587
Cla97C11G210670	Wild cucumber (PI 183967)	cpiwmbB112
Cla97C11G210670	Wild cucumber (PI 183967)	cpiwmbB543
Cla97C11G210670	Cucumber (Chinese Long) v3	cucwmbB115
Cla97C11G210670	Cucumber (Chinese Long) v3	cucwmbB539
Cla97C11G210670	Cucumber (Chinese Long) v2	cuwmbB110
Cla97C11G210670	Cucumber (Chinese Long) v2	cuwmbB519
Cla97C11G210670	Bottle gourd (USVL1VR-Ls)	lsiwmbB043
Cla97C11G210670	Bottle gourd (USVL1VR-Ls)	lsiwmbB080
Cla97C11G210670	Melon (DHL92) v3.6.1	medwmbB082
Cla97C11G210670	Melon (DHL92) v3.6.1	medwmbB162
Cla97C11G210670	Melon (DHL92) v3.5.1	mewmbB089
Cla97C11G210670	Melon (DHL92) v3.5.1	mewmbB176
Cla97C11G210670	Watermelon (Charleston Gray)	wcgwmbB065
Cla97C11G210670	Watermelon (Charleston Gray)	wcgwmbB137
Cla97C11G210670	Watermelon (97103) v1	wmwmbB315
Cla97C11G210670	Wax gourd	wgowmbB352