Cla97C10G195740 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C10G195740
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	chaperone protein dnaJ 8, chloroplastic
Location	Cla97Chr10 : 25250692 .. 25251039 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCGTTGCTACTTCTGGATTCATTGCTCGTAGTGGTTCTTCCTCTTCTTCGTCGTGGATTCGCCATAGGAATCGCCCGAAGAAGGATCGGAGTTCTACGAGTCAACTTAGGGTTTCTTGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGTCATTGATCCTTATCGAACTCTTCGGATTCAACCTGGCGCCTCTGAATCTGAGGTCAAAAAAGCCTTCCGACATCTCGCTCTTCAGGTTCCTTTCCCTCTTTCGATTTCTCTATCTCTGTCTTCTCTTTTCTTCACAGAATTTGGTTTATCTTACTCTTCCGATTTCGTCGATTTTTCAGTATCATCCTGA

mRNA sequence

ATGGCTTCCGTTGCTACTTCTGGATTCATTGCTCGTAGTGGTTCTTCCTCTTCTTCGTCGTGGATTCGCCATAGGAATCGCCCGAAGAAGGATCGGAGTTCTACGAGTCAACTTAGGGTTTCTTGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGTCATTGATCCTTATCGAACTCTTCGGATTCAACCTGGCGCCTCTGAATCTGAGGTCAAAAAAGCCTTCCGACATCTCGCTCTTCAGGTTCCTTTCCCTCTTTCGATTTCTCTATCTCTGTCTTCTCTTTTCTTCACAGAATTTGGTTTATCTTACTCTTCCGATTTCGTCGATTTTTCAGTATCATCCTGA

Coding sequence (CDS)

ATGGCTTCCGTTGCTACTTCTGGATTCATTGCTCGTAGTGGTTCTTCCTCTTCTTCGTCGTGGATTCGCCATAGGAATCGCCCGAAGAAGGATCGGAGTTCTACGAGTCAACTTAGGGTTTCTTGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGTCATTGATCCTTATCGAACTCTTCGGATTCAACCTGGCGCCTCTGAATCTGAGGTCAAAAAAGCCTTCCGACATCTCGCTCTTCAGGTTCCTTTCCCTCTTTCGATTTCTCTATCTCTGTCTTCTCTTTTCTTCACAGAATTTGGTTTATCTTACTCTTCCGATTTCGTCGATTTTTCAGTATCATCCTGA

Protein sequence

MASVATSGFIARSGSSSSSSWIRHRNRPKKDRSSTSQLRVSCSSSSSSSSSSVIDPYRTLRIQPGASESEVKKAFRHLALQVPFPLSISLSLSSLFFTEFGLSYSSDFVDFSVSS

Homology

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BLAST of Cla97C10G195740 vs. NCBI nr
Match: XP_008465135.1 (PREDICTED: chaperone protein dnaJ 8, chloroplastic [Cucumis melo])

HSP 1 Score: 59.3 bits (142), Expect = 9.9e-06
Identity = 65/81 (80.25%), Postives = 66/81 (81.48%), Query Frame = 0


Query: 1  MASVATSGFIARSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIDPYRTL 60
          MASVAT+GFIAR    XXXXXXXXXXXXXXXXXXXXXXXXXX          V DPYRTL
Sbjct: 1  MASVATAGFIAR----XXXXXXXXXXXXXXXXXXXXXXXXXXLRVSCSSSSSVADPYRTL 60

Query: 61 RIQPGASESEVKKAFRHLALQ 82
          RIQPGASESEVKKAFRHLALQ
Sbjct: 61 RIQPGASESEVKKAFRHLALQ 77

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BLAST of Cla97C10G195740 vs. NCBI nr
Match: XP_022949473.1 (chaperone protein dnaJ 8, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 57.4 bits (137), Expect = 3.8e-05
Identity = 37/81 (45.68%), Postives = 41/81 (50.62%), Query Frame = 0


Query: 1  MASVATSGFIARSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIDPYRTL 60
          MASV+T+GFIAR+G                                      + DPYRTL
Sbjct: 1  MASVSTAGFIARTG-----SSSWIRQRNRANKLHRSSRNQVRASYSSYSSSSMADPYRTL 60

Query: 61 RIQPGASESEVKKAFRHLALQ 82
          RIQPGASESEVKKAFR LALQ
Sbjct: 61 RIQPGASESEVKKAFRQLALQ 76

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BLAST of Cla97C10G195740 vs. NCBI nr
Match: XP_023525914.1 (chaperone protein dnaJ 8, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 57.4 bits (137), Expect = 3.8e-05
Identity = 37/81 (45.68%), Postives = 41/81 (50.62%), Query Frame = 0


Query: 1  MASVATSGFIARSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIDPYRTL 60
          MASV+T+GFIAR+G                                      + DPYRTL
Sbjct: 1  MASVSTAGFIARTG-----SSSWIRQRNRANKLHRSSRNQVRASYSSYSSSSMADPYRTL 60

Query: 61 RIQPGASESEVKKAFRHLALQ 82
          RIQPGASESEVKKAFR LALQ
Sbjct: 61 RIQPGASESEVKKAFRQLALQ 76

[Close]

BLAST of Cla97C10G195740 vs. NCBI nr
Match: CAN81795.1 (hypothetical protein VITISV_017001 [Vitis vinifera])

HSP 1 Score: 56.6 bits (135), Expect = 6.4e-05
Identity = 27/30 (90.00%), Postives = 28/30 (93.33%), Query Frame = 0


Query: 55 DPYRTLRIQPGASESEVKKAFRHLALQVPF 85
          DPY+TLRIQPGASESEVKKAFR LALQV F
Sbjct: 46 DPYKTLRIQPGASESEVKKAFRRLALQVHF 75

[Close]

BLAST of Cla97C10G195740 vs. NCBI nr
Match: XP_010034039.1 (PREDICTED: chaperone protein dnaJ 8, chloroplastic [Eucalyptus grandis] >KCW53908.1 hypothetical protein EUGRSUZ_J03121 [Eucalyptus grandis])

HSP 1 Score: 55.8 bits (133), Expect = 1.1e-04
Identity = 26/29 (89.66%), Postives = 28/29 (96.55%), Query Frame = 0


Query: 53 VIDPYRTLRIQPGASESEVKKAFRHLALQ 82
          V+DPY+TLRIQPGASESEVKKAFR LALQ
Sbjct: 45 VLDPYKTLRIQPGASESEVKKAFRRLALQ 73

[Close]

BLAST of Cla97C10G195740 vs. TrEMBL
Match: tr|A0A1S3CPN7|A0A1S3CPN7_CUCME (chaperone protein dnaJ 8, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103502812 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.5e-06
Identity = 65/81 (80.25%), Postives = 66/81 (81.48%), Query Frame = 0


Query: 1  MASVATSGFIARSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIDPYRTL 60
          MASVAT+GFIAR    XXXXXXXXXXXXXXXXXXXXXXXXXX          V DPYRTL
Sbjct: 1  MASVATAGFIAR----XXXXXXXXXXXXXXXXXXXXXXXXXXLRVSCSSSSSVADPYRTL 60

Query: 61 RIQPGASESEVKKAFRHLALQ 82
          RIQPGASESEVKKAFRHLALQ
Sbjct: 61 RIQPGASESEVKKAFRHLALQ 77

[Close]

BLAST of Cla97C10G195740 vs. TrEMBL
Match: tr|M1B4C4|M1B4C4_SOLTU (Uncharacterized protein OS=Solanum tuberosum OX=4113 GN=102587221 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.5e-05
Identity = 29/43 (67.44%), Postives = 35/43 (81.40%), Query Frame = 0


Query: 53 VIDPYRTLRIQPGASESEVKKAFRHLALQVPFPLSISLSLSSL 96
          V DPY+TL+IQPGASESEV+KAFR LAL+V  PL  +L+L  L
Sbjct: 50 VADPYKTLKIQPGASESEVRKAFRQLALKVRTPLLSALNLEIL 92

[Close]

BLAST of Cla97C10G195740 vs. TrEMBL
Match: tr|A5C3Y1|A5C3Y1_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_017001 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.2e-05
Identity = 27/30 (90.00%), Postives = 28/30 (93.33%), Query Frame = 0


Query: 55 DPYRTLRIQPGASESEVKKAFRHLALQVPF 85
          DPY+TLRIQPGASESEVKKAFR LALQV F
Sbjct: 46 DPYKTLRIQPGASESEVKKAFRRLALQVHF 75

[Close]

BLAST of Cla97C10G195740 vs. TrEMBL
Match: tr|A0A059AJA7|A0A059AJA7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_J03121 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 7.2e-05
Identity = 26/29 (89.66%), Postives = 28/29 (96.55%), Query Frame = 0


Query: 53 VIDPYRTLRIQPGASESEVKKAFRHLALQ 82
          V+DPY+TLRIQPGASESEVKKAFR LALQ
Sbjct: 45 VLDPYKTLRIQPGASESEVKKAFRRLALQ 73

[Close]

BLAST of Cla97C10G195740 vs. TrEMBL
Match: tr|B9RGM8|B9RGM8_RICCO (Chaperone protein dnaJ 8, chloroplast, putative OS=Ricinus communis OX=3988 GN=RCOM_1442130 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 9.4e-05
Identity = 26/29 (89.66%), Postives = 28/29 (96.55%), Query Frame = 0


Query: 53 VIDPYRTLRIQPGASESEVKKAFRHLALQ 82
          V+DPY+TLRIQPGASESEVKKAFR LALQ
Sbjct: 49 VMDPYKTLRIQPGASESEVKKAFRQLALQ 77

[Close]

BLAST of Cla97C10G195740 vs. TAIR10
Match: AT1G80920.1 (Chaperone DnaJ-domain superfamily protein)

HSP 1 Score: 43.5 bits (101), Expect = 1.0e-04
Identity = 19/27 (70.37%), Postives = 24/27 (88.89%), Query Frame = 0


Query: 53 VIDPYRTLRIQPGASESEVKKAFRHLA 80
          V+DPY+TL+I+P +SE EVKKAFR LA
Sbjct: 53 VMDPYKTLKIRPDSSEYEVKKAFRQLA 79

The following BLAST results are available for this feature:

BLAST of Cla97C10G195740 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008465135.1	9.9e-06	80.25	PREDICTED: chaperone protein dnaJ 8, chloroplastic [Cucumis melo]	[more]
XP_022949473.1	3.8e-05	45.68	chaperone protein dnaJ 8, chloroplastic-like [Cucurbita moschata]	[more]
XP_023525914.1	3.8e-05	45.68	chaperone protein dnaJ 8, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
CAN81795.1	6.4e-05	90.00	hypothetical protein VITISV_017001 [Vitis vinifera]	[more]
XP_010034039.1	1.1e-04	89.66	PREDICTED: chaperone protein dnaJ 8, chloroplastic [Eucalyptus grandis] >KCW5390...	[more]

BLAST of Cla97C10G195740 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CPN7\|A0A1S3CPN7_CUCME	6.5e-06	80.25	chaperone protein dnaJ 8, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103502812 ...	[more]
tr\|M1B4C4\|M1B4C4_SOLTU	2.5e-05	67.44	Uncharacterized protein OS=Solanum tuberosum OX=4113 GN=102587221 PE=4 SV=1	[more]
tr\|A5C3Y1\|A5C3Y1_VITVI	4.2e-05	90.00	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_017001 PE=4 SV=1	[more]
tr\|A0A059AJA7\|A0A059AJA7_EUCGR	7.2e-05	89.66	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_J03121 PE=4 SV...	[more]
tr\|B9RGM8\|B9RGM8_RICCO	9.4e-05	89.66	Chaperone protein dnaJ 8, chloroplast, putative OS=Ricinus communis OX=3988 GN=R...	[more]

BLAST of Cla97C10G195740 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C10G195740 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G80920.1	1.0e-04	70.37	Chaperone DnaJ-domain superfamily protein	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001623	DnaJ_domain
IPR036869	J_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009416	response to light stimulus
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0043231	intracellular membrane-bounded organelle
cellular_component	GO:0005634	nucleus
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C10G195740.1	Cla97C10G195740.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036869	Chaperone J-domain superfamily	GENE3D	G3DSA:1.10.287.110		coord: 25..82 e-value: 2.1E-6 score: 29.6
IPR036869	Chaperone J-domain superfamily	SUPERFAMILY	SSF46565	Chaperone J-domain	coord: 13..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..54
IPR001623	DnaJ domain	CDD	cd06257	DnaJ	coord: 55..82 e-value: 3.12078E-6 score: 39.4509

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C10G195740	Cla017219	Watermelon (97103) v1	wmwmbB051
Cla97C10G195740	Csa3G710780	Cucumber (Chinese Long) v2	cuwmbB182
Cla97C10G195740	MELO3C026732	Melon (DHL92) v3.5.1	mewmbB316
Cla97C10G195740	ClCG10G012870	Watermelon (Charleston Gray)	wcgwmbB038
Cla97C10G195740	CSPI03G30270	Wild cucumber (PI 183967)	cpiwmbB185
Cla97C10G195740	Cucsa.177320	Cucumber (Gy14) v1	cgywmbB317
Cla97C10G195740	CmaCh14G010500	Cucurbita maxima (Rimu)	cmawmbB248
Cla97C10G195740	CmoCh14G010650	Cucurbita moschata (Rifu)	cmowmbB229
Cla97C10G195740	Lsi03G012540	Bottle gourd (USVL1VR-Ls)	lsiwmbB218
Cla97C10G195740	CsGy3G028080	Cucumber (Gy14) v2	cgybwmbB175
Cla97C10G195740	MELO3C026732.2	Melon (DHL92) v3.6.1	medwmbB305
Cla97C10G195740	Carg11261	Silver-seed gourd	carwmbB0851
Cla97C10G195740	CsaV3_3G032720	Cucumber (Chinese Long) v3	cucwmbB183
Cla97C10G195740	Bhi11G001246	Wax gourd	wgowmbB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C10G195740	Watermelon (97103) v2	wmbwmbB063
Cla97C10G195740	Silver-seed gourd	carwmbB0200
Cla97C10G195740	Silver-seed gourd	carwmbB0369
Cla97C10G195740	Cucumber (Gy14) v2	cgybwmbB490
Cla97C10G195740	Cucurbita maxima (Rimu)	cmawmbB360
Cla97C10G195740	Cucurbita maxima (Rimu)	cmawmbB445
Cla97C10G195740	Cucurbita moschata (Rifu)	cmowmbB344
Cla97C10G195740	Cucurbita moschata (Rifu)	cmowmbB426
Cla97C10G195740	Bottle gourd (USVL1VR-Ls)	lsiwmbB162
Cla97C10G195740	Watermelon (97103) v1	wmwmbB015