Cla97C10G192620 (gene) Watermelon (97103) v2

Overview
NameCla97C10G192620
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
Descriptionconserved peptide upstream open reading frame 41
LocationCla97Chr10 : 20432674 .. 20433670 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCATCTACTGTCTATAAAGTTTCGTCTTTGATGGTCATTCGGATACTTCAAACTTTACTCTGTTCTTCGAGTCGTTTAGATCTGACCCATCTTCACAAATCTGGCTCTCTCTGGAAATTCTCTTCCGATTTTGCTGTAAGATTCTTTCTCATTTTCTCGCAATTTCATTTCTTAATTCCTGCTTCATTCTCTCATGTATATTTTTGCCTTCCCGCCTGTTTGATCTCTGTTGCCTGGCAAAGGTTTCTGAGAATCTGAAGAAAATGAATGGACATGGAAAATAGTTGTTCAGATCAAAGCCTTGGAAATTAGAAAACCCCGAATGATTTTGTCGGTTCTGTTGCTCATTAGAGGGAAATTTTGATTTGATTGTCTTGGGAACTAAGCTGAAAGGGATTTGTTTCAATTTATGTTTTATTTTCTTCGTTTTCTTGGCGATCAAACGGTGGATGCCTTATCTTTCCTGAGATATCGTAATTCGGCTTCAAATTCTCGTTTACAATGTCCCTCTTTTTTCACTTTCTTGAAATACTTTTAGGGGTTTAAATTTATGTTCTGTAGACGTTGATTTATCATTTTGCAGCTTAGAAAAAGCTTCATATTTCCTCCCAAATAGTTGGTTTGCTGCCTTTCTTCAGTATATTGGCTTTATGTTAAATATTTGAAAGAATGTAGATTGTTGTAGTTCTTTGCTTTATGTATTCAATGCATCTCACAGATTACTTGTTTTCTTGTTTAGATTTTTCTTTCCCCTTAATTATATTCCTTACCCATTTATCATCCGTTTGGAAATTTACAGTCCTTTTACCTTTATATGATATACATATTTATGTATTTATTATTGTTTTTCATGTTTCTGCAGGGGTACCATTGTATAAGCTGTGGATGTGTTACCTTTACGTATTGGGGGAATAATATGCTTTGGTTGAGCATATCAATTGATGTATTTCGTAAAGTTGTGCATTTGAACCTCTATTGCAGGGTTATTTTGTAA

mRNA sequence

ATGTCATCTACTGTCTATAAAGTTTCGTCTTTGATGGTCATTCGGATACTTCAAACTTTACTCTGTTCTTCGAGTCGTTTAGATCTGACCCATCTTCACAAATCTGGCTCTCTCTGGAAATTCTCTTCCGATTTTGCTGGGTACCATTGTATAAGCTGTGGATGTGTTACCTTTACGTATTGGGGGAATAATATGCTTTGGTTGAGCATATCAATTGATGTATTTCGTAAAGTTGTGCATTTGAACCTCTATTGCAGGGTTATTTTGTAA

Coding sequence (CDS)

ATGTCATCTACTGTCTATAAAGTTTCGTCTTTGATGGTCATTCGGATACTTCAAACTTTACTCTGTTCTTCGAGTCGTTTAGATCTGACCCATCTTCACAAATCTGGCTCTCTCTGGAAATTCTCTTCCGATTTTGCTGGGTACCATTGTATAAGCTGTGGATGTGTTACCTTTACGTATTGGGGGAATAATATGCTTTGGTTGAGCATATCAATTGATGTATTTCGTAAAGTTGTGCATTTGAACCTCTATTGCAGGGTTATTTTGTAA

Protein sequence

MSSTVYKVSSLMVIRILQTLLCSSSRLDLTHLHKSGSLWKFSSDFAGYHCISCGCVTFTYWGNNMLWLSISIDVFRKVVHLNLYCRVIL
Homology
[Close]
BLAST of Cla97C10G192620 vs. TAIR10
Match: AT5G09463.1 (conserved peptide upstream open reading frame 41)

HSP 1 Score: 40.0 bits (92), Expect = 8.7e-04
Identity = 18/25 (72.00%), Postives = 21/25 (84.00%), Query Frame = 0 

Query: 65 MLWLSISIDVFRKVVHLNLYCRVIL 90
          M W + S+DV+RKVV LNLYCRVIL
Sbjct: 1  MSWFTRSVDVYRKVVSLNLYCRVIL 25

The following BLAST results are available for this feature:
BLAST of Cla97C10G192620 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cla97C10G192620 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of Cla97C10G192620 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C10G192620 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G09463.18.7e-0472.00conserved peptide upstream open reading frame 41[more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C10G192620.1Cla97C10G192620.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C10G192620Watermelon (97103) v2wmbwmbB060
Cla97C10G192620Silver-seed gourdcarwmbB0302
Cla97C10G192620Silver-seed gourdcarwmbB0294
Cla97C10G192620Silver-seed gourdcarwmbB0391
Cla97C10G192620Cucumber (Gy14) v2cgybwmbB261
Cla97C10G192620Cucumber (Gy14) v2cgybwmbB491
Cla97C10G192620Cucumber (Gy14) v1cgywmbB393
Cla97C10G192620Cucurbita maxima (Rimu)cmawmbB332
Cla97C10G192620Cucurbita maxima (Rimu)cmawmbB524
Cla97C10G192620Cucurbita maxima (Rimu)cmawmbB713
Cla97C10G192620Cucurbita moschata (Rifu)cmowmbB316
Cla97C10G192620Cucurbita moschata (Rifu)cmowmbB505
Cla97C10G192620Melon (DHL92) v3.6.1medwmbB457
Cla97C10G192620Cucurbita moschata (Rifu)cmowmbB684
Cla97C10G192620Wild cucumber (PI 183967)cpiwmbB279
Cla97C10G192620Wild cucumber (PI 183967)cpiwmbB542
Cla97C10G192620Cucumber (Chinese Long) v3cucwmbB274
Cla97C10G192620Cucumber (Chinese Long) v3cucwmbB537
Cla97C10G192620Cucumber (Chinese Long) v2cuwmbB272
Cla97C10G192620Cucumber (Chinese Long) v2cuwmbB277
Cla97C10G192620Cucumber (Chinese Long) v2cuwmbB518
Cla97C10G192620Bottle gourd (USVL1VR-Ls)lsiwmbB218
Cla97C10G192620Melon (DHL92) v3.6.1medwmbB160
Cla97C10G192620Melon (DHL92) v3.5.1mewmbB174
Cla97C10G192620Melon (DHL92) v3.5.1mewmbB464
Cla97C10G192620Watermelon (Charleston Gray)wcgwmbB007
Cla97C10G192620Watermelon (Charleston Gray)wcgwmbB038
Cla97C10G192620Watermelon (97103) v1wmwmbB051
Cla97C10G192620Wax gourdwgowmbB001