Cla97C10G192550 (gene) Watermelon (97103) v2

NameCla97C10G192550
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
Descriptionclassical arabinogalactan protein 4
LocationCla97Chr10 : 19960239 .. 19960811 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCTCCACCGTTCTGCATGTTCTCACGGTGGCGCTCTTGCTGATCTCCGCCGCTGCAACATCCCCAGTACCATCTCCAGCGCCGAGCCCCGAATCACCGGCGTGGAAATGGACTCCCAATAACGAGCCACCATCCTCTCCACCGACGGCGGAACCGCCTACGGCGTCGTCCCCATCTTCCCCAACAATGTCTCCGCCGGCCACCCCACCGGAGCTCAGCCCCGTTCCATCATCCCATGCACCGATTTTACCACCCAAGGCTAACCCACCCGCATTGTCGCCGACCGCTCCACCGCCGGCGGTGAAGAGCCCCAGTCATGCGCCATCCCCGGCAAAAACGAAAGCACCGGCTCCGGCTCCGTCGAAAATGAGCCCACCACCGGCCAAGGCACCGAAATCTTCTCAAGCTCCGGCGAGTAGTCCCCCATCACCAAATGGAAGTATGGAGCCACCAGCGCCATCCGTAGCTCCGGCAGCGCCGAAGCAGAGTAACAGCGGCGGTGCAAACAGATTCGCCATTGGTGGGTCTGTTGCAGTTGGATTAATGATTGCGGCTTTAATCGCTTAA

mRNA sequence

ATGGCTTCCTCCACCGTTCTGCATGTTCTCACGGTGGCGCTCTTGCTGATCTCCGCCGCTGCAACATCCCCAGTACCATCTCCAGCGCCGAGCCCCGAATCACCGGCGTGGAAATGGACTCCCAATAACGAGCCACCATCCTCTCCACCGACGGCGGAACCGCCTACGGCGTCGTCCCCATCTTCCCCAACAATGTCTCCGCCGGCCACCCCACCGGAGCTCAGCCCCGTTCCATCATCCCATGCACCGATTTTACCACCCAAGGCTAACCCACCCGCATTGTCGCCGACCGCTCCACCGCCGGCGGTGAAGAGCCCCAGTCATGCGCCATCCCCGGCAAAAACGAAAGCACCGGCTCCGGCTCCGTCGAAAATGAGCCCACCACCGGCCAAGGCACCGAAATCTTCTCAAGCTCCGGCGAGTAGTCCCCCATCACCAAATGGAAGTATGGAGCCACCAGCGCCATCCGTAGCTCCGGCAGCGCCGAAGCAGAGTAACAGCGGCGGTGCAAACAGATTCGCCATTGGTGGGTCTGTTGCAGTTGGATTAATGATTGCGGCTTTAATCGCTTAA

Coding sequence (CDS)

ATGGCTTCCTCCACCGTTCTGCATGTTCTCACGGTGGCGCTCTTGCTGATCTCCGCCGCTGCAACATCCCCAGTACCATCTCCAGCGCCGAGCCCCGAATCACCGGCGTGGAAATGGACTCCCAATAACGAGCCACCATCCTCTCCACCGACGGCGGAACCGCCTACGGCGTCGTCCCCATCTTCCCCAACAATGTCTCCGCCGGCCACCCCACCGGAGCTCAGCCCCGTTCCATCATCCCATGCACCGATTTTACCACCCAAGGCTAACCCACCCGCATTGTCGCCGACCGCTCCACCGCCGGCGGTGAAGAGCCCCAGTCATGCGCCATCCCCGGCAAAAACGAAAGCACCGGCTCCGGCTCCGTCGAAAATGAGCCCACCACCGGCCAAGGCACCGAAATCTTCTCAAGCTCCGGCGAGTAGTCCCCCATCACCAAATGGAAGTATGGAGCCACCAGCGCCATCCGTAGCTCCGGCAGCGCCGAAGCAGAGTAACAGCGGCGGTGCAAACAGATTCGCCATTGGTGGGTCTGTTGCAGTTGGATTAATGATTGCGGCTTTAATCGCTTAA

Protein sequence

MASSTVLHVLTVALLLISAAATSPVPSPAPSPESPAWKWTPNNEPPSSPPTAEPPTASSPSSPTMSPPATPPELSPVPSSHAPILPPKANPPALSPTAPPPAVKSPSHAPSPAKTKAPAPAPSKMSPPPAKAPKSSQAPASSPPSPNGSMEPPAPSVAPAAPKQSNSGGANRFAIGGSVAVGLMIAALIA
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C10G192550.1Cla97C10G192550.1mRNA


Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01217PRICHEXTENSNcoord: 12..33
score: 25.45
coord: 59..76
score: 40.0
coord: 80..105
score: 36.92
coord: 39..55
score: 38.82
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 22..173
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 42..134
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 145..159

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None