Cla97C10G191670 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C10G191670
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	agamous-like MADS-box protein AGL80
Location	Cla97Chr10 : 14069557 .. 14070024 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGATTTTTTCTTGGACCGGAAGAGGAAAATCGAATCGGAGACGTGTAAGCTTTGTCAGAAAGTTGATGACGTTATGTGCCCTAAGTGGGACGAGCGGCTCGAGCTTATGTCGGAACACGAATTGAGAGAGTTCATGGAAGGACTGAATGTGAAAATCGAAGCTGCCAATGGAATGATCGATTTGATGGAAGCCGATTACGAAGATCTGTTTGGCCAGCTGTGTTCGGAAAATTCAGTTCAAATGGGAGGGGATTCCAATCCTACTACTCCACTGCCGAATTGGGCTAGCCCTAATGAAGAAGAAGTGGCGATGGATGAGTTCAATAATAGTAGGTATCTTCAAATGGGGTTGGAGGAAGAACAAGAAGTCAACTACATGGTTCATTATACAAATCTGATGAACGCTGAGTTTTATTATTACAATAATATTGAGCATTTGATGATTCCCACCGGTAACCTGTAA

mRNA sequence

ATGACTGATTTTTTCTTGGACCGGAAGAGGAAAATCGAATCGGAGACGTGTAAGCTTTGTCAGAAAGTTGATGACGTTATGTGCCCTAAGTGGGACGAGCGGCTCGAGCTTATGTCGGAACACGAATTGAGAGAGTTCATGGAAGGACTGAATGTGAAAATCGAAGCTGCCAATGGAATGATCGATTTGATGGAAGCCGATTACGAAGATCTGTTTGGCCAGCTGTGTTCGGAAAATTCAGTTCAAATGGGAGGGGATTCCAATCCTACTACTCCACTGCCGAATTGGGCTAGCCCTAATGAAGAAGAAGTGGCGATGGATGAGTTCAATAATAGTAGGTATCTTCAAATGGGGTTGGAGGAAGAACAAGAAGTCAACTACATGGTTCATTATACAAATCTGATGAACGCTGAGTTTTATTATTACAATAATATTGAGCATTTGATGATTCCCACCGGTAACCTGTAA

Coding sequence (CDS)

ATGACTGATTTTTTCTTGGACCGGAAGAGGAAAATCGAATCGGAGACGTGTAAGCTTTGTCAGAAAGTTGATGACGTTATGTGCCCTAAGTGGGACGAGCGGCTCGAGCTTATGTCGGAACACGAATTGAGAGAGTTCATGGAAGGACTGAATGTGAAAATCGAAGCTGCCAATGGAATGATCGATTTGATGGAAGCCGATTACGAAGATCTGTTTGGCCAGCTGTGTTCGGAAAATTCAGTTCAAATGGGAGGGGATTCCAATCCTACTACTCCACTGCCGAATTGGGCTAGCCCTAATGAAGAAGAAGTGGCGATGGATGAGTTCAATAATAGTAGGTATCTTCAAATGGGGTTGGAGGAAGAACAAGAAGTCAACTACATGGTTCATTATACAAATCTGATGAACGCTGAGTTTTATTATTACAATAATATTGAGCATTTGATGATTCCCACCGGTAACCTGTAA

Protein sequence

MTDFFLDRKRKIESETCKLCQKVDDVMCPKWDERLELMSEHELREFMEGLNVKIEAANGMIDLMEADYEDLFGQLCSENSVQMGGDSNPTTPLPNWASPNEEEVAMDEFNNSRYLQMGLEEEQEVNYMVHYTNLMNAEFYYYNNIEHLMIPTGNL

Homology

[Close]

BLAST of Cla97C10G191670 vs. NCBI nr
Match: XP_022935361.1 (agamous-like MADS-box protein AGL14 [Cucurbita moschata])

HSP 1 Score: 127.1 bits (318), Expect = 5.2e-26
Identity = 81/168 (48.21%), Postives = 106/168 (63.10%), Query Frame = 0


Query: 1   MTDFFLDRKRKIESETCKLCQKVDDVMCPKWDERLELMSEHELREFMEGLNVKIEAANGM 60
           ++D+F DRKRK+ +E CK  +KV  +M P WDERL+ +SE +LREFM GL+ +IEAA  M
Sbjct: 97  LSDYFSDRKRKLVTEMCKHREKVGKIMWPDWDERLDCLSEQQLREFMNGLDSRIEAAGRM 156

Query: 61  IDLMEADYEDLFGQL-CS--ENSVQMGGDSNPTTPLP-----------NWASPNEEEVAM 120
           +D M+AD E+LFG   C   EN VQMGGDS  +TP+P           N  +PN+ E+  
Sbjct: 157 VDFMDADNENLFGMFSCEEYENVVQMGGDS--STPVPPLVELESPDSLNSPNPNKHEIGC 216

Query: 121 DEFNNSRYLQMGLEEEQEVNYMVHYTNLMNAEFYYYNNIEHLMIPTGN 155
           + F N  +L   LE+E E NYM  Y NLMN EF   N+IE   + TGN
Sbjct: 217 N-FENLEFL---LEDEDE-NYMALYANLMNDEFDECNDIEQ-WLRTGN 256

[Close]

BLAST of Cla97C10G191670 vs. NCBI nr
Match: XP_023528957.1 (agamous-like MADS-box protein AGL14 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 123.2 bits (308), Expect = 7.5e-25
Identity = 81/168 (48.21%), Postives = 104/168 (61.90%), Query Frame = 0


Query: 1   MTDFFLDRKRKIESETCKLCQKVDDVMCPKWDERLELMSEHELREFMEGLNVKIEAANGM 60
           ++D+F DRKRK+ +E CK  +KV  +M P WDERL+ +SE +LREFM GL+ +IEAA  M
Sbjct: 97  LSDYFSDRKRKLVTEMCKHREKVGKIMWPDWDERLDCLSEQQLREFMNGLDSRIEAAGRM 156

Query: 61  IDLMEADYEDLFGQL-CS--ENSVQMGGDSN-PTTPLPNWASPN----------EEEVAM 120
           ID M+AD E+LFG   C   EN VQMGGDS+ P  PL    SP+          E+E+  
Sbjct: 157 IDFMDADNENLFGMFSCEEYENVVQMGGDSSTPVPPLVELESPDSLNTPNXXXXEDEIGC 216

Query: 121 DEFNNSRYLQMGLEEEQEVNYMVHYTNLMNAEFYYYNNIEHLMIPTGN 155
           + F N  +L   LE+E E NYM  Y NLMN E    N+IE   + TGN
Sbjct: 217 N-FENLEFL---LEDEDE-NYMALYANLMNDELDECNDIEQ-WLRTGN 258

[Close]

BLAST of Cla97C10G191670 vs. NCBI nr
Match: XP_022983430.1 (agamous-like MADS-box protein AGL14 [Cucurbita maxima])

HSP 1 Score: 119.8 bits (299), Expect = 8.3e-24
Identity = 79/164 (48.17%), Postives = 100/164 (60.98%), Query Frame = 0


Query: 1   MTDFFLDRKRKIESETCKLCQKVDDVMCPKWDERLELMSEHELREFMEGLNVKIEAANGM 60
           ++D+F DRKRK+ +E CK  +KV  +M P WDERL+ +SE +LREFM GL+ +IEAA  M
Sbjct: 97  LSDYFSDRKRKLVTEMCKHREKVGKIMWPDWDERLDCLSEQQLREFMNGLDSRIEAAGRM 156

Query: 61  IDLMEADYEDLFGQL-CS--ENSVQMGGDSN-PTTPL------PNWASPNEEEVAMDEFN 120
           ID M+AD E+LFG   C   EN VQMGGDS+ P   L       +  SPN      +   
Sbjct: 157 IDFMDADNENLFGMFSCEEYENVVQMGGDSSTPVLSLVELESTDSLNSPNXXXXXXEIGC 216

Query: 121 NSRYLQMGLEEEQEVNYMVHYTNLMNAEFYYYNNIEHLMIPTGN 155
           N   L+  LE+E E NYM  Y NLMN EF   N+IE   + TGN
Sbjct: 217 NFENLEYLLEDEDE-NYMALYANLMNDEFDECNDIEQ-WLRTGN 258

[Close]

BLAST of Cla97C10G191670 vs. NCBI nr
Match: XP_022143272.1 (uncharacterized protein LOC111013182 isoform X2 [Momordica charantia])

HSP 1 Score: 68.2 bits (165), Expect = 2.9e-08
Identity = 32/62 (51.61%), Postives = 39/62 (62.90%), Query Frame = 0


Query: 4   FFLDRKRKIESETCKLCQKVDDVMCPKWDERLELMSEHELREFMEGLNVKIEAANGMIDL 63
           +F DR +KIE+E  K     +D+ CP WDERLE +S H+LR  ME L  K E A GMI  
Sbjct: 70  YFSDRMKKIEAERAKFRNDAEDIKCPSWDERLECLSGHQLRLVMEDLGSKSEVAEGMIGF 129

Query: 64  ME 66
           ME
Sbjct: 130 ME 131

[Close]

BLAST of Cla97C10G191670 vs. NCBI nr
Match: XP_022143271.1 (uncharacterized protein LOC111013182 isoform X1 [Momordica charantia])

HSP 1 Score: 68.2 bits (165), Expect = 2.9e-08
Identity = 32/62 (51.61%), Postives = 39/62 (62.90%), Query Frame = 0


Query: 4   FFLDRKRKIESETCKLCQKVDDVMCPKWDERLELMSEHELREFMEGLNVKIEAANGMIDL 63
           +F DR +KIE+E  K     +D+ CP WDERLE +S H+LR  ME L  K E A GMI  
Sbjct: 70  YFSDRMKKIEAERAKFRNDAEDIKCPSWDERLECLSGHQLRLVMEDLGSKSEVAEGMIGF 129

Query: 64  ME 66
           ME
Sbjct: 130 ME 131

[Close]

BLAST of Cla97C10G191670 vs. TrEMBL
Match: tr|A0A022Q4W9|A0A022Q4W9_ERYGU (Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a024849mg PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.4e-05
Identity = 32/97 (32.99%), Postives = 51/97 (52.58%), Query Frame = 0


Query: 4   FFLDRKRKIESETCKLCQKVDDVMCPKWDERLELMSEHELREFMEGLNVKIEAANGMIDL 63
           FF ++  KIE E  KL ++  +V  PKWDERL+  SE EL++F   L  KIE+A   I+ 
Sbjct: 93  FFKNQTEKIEDEVNKLRKRTREVKYPKWDERLDTCSEDELKDFAGKLTAKIESARVRINS 152

Query: 64  MEADYEDLFG----QLCSENSVQMGGDSNPTTPLPNW 97
           ++     +F     ++   N+     ++     +PNW
Sbjct: 153 IKVSRSTVFNMGNQRMMIMNNGNYAYNNTQDNRMPNW 189

[Close]

BLAST of Cla97C10G191670 vs. TrEMBL
Match: tr|A0A1S4CC33|A0A1S4CC33_TOBAC (agamous-like MADS-box protein AGL80 OS=Nicotiana tabacum OX=4097 GN=LOC107817389 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.7e-04
Identity = 37/121 (30.58%), Postives = 62/121 (51.24%), Query Frame = 0


Query: 1   MTDFFLDRKRKIESETCKLCQKVDDVMCPKWDERLELMSEHELREFMEGLNVKIEAANGM 60
           ++D+FL+R +K+E E  KL +K      P W E +  +SE +LREF+  L+ K+E     
Sbjct: 101 LSDYFLNRNKKVEEELIKLRKKNMQKKYPCWLEFMNQLSEVKLREFLTLLDDKVEKVKSR 160

Query: 61  IDLMEADYEDLFGQLCSENSVQMGGDSNPTTPL---------PNWASPNEEEVAMDEFNN 113
           IDL++       G   SE   Q+  +++   PL          N+ + N+E+ A+  + N
Sbjct: 161 IDLLK-------GNFSSEGLSQLTNNNDNVNPLLVQGGMEYGGNFINNNQEQAAIYPYCN 214

[Close]

BLAST of Cla97C10G191670 vs. TrEMBL
Match: tr|A0A0A0LME6|A0A0A0LME6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G336070 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.7e-04
Identity = 26/63 (41.27%), Postives = 40/63 (63.49%), Query Frame = 0


Query: 1   MTDFFLDRKRKIESETCKLCQKVDDVMCPKWDERLELMSEHELREFMEGLNVKIEAANGM 60
           + DFF +RK+K+E++  KL + V +   P WDERL+ + E +LR  M  L+ KIE A   
Sbjct: 93  LIDFFSERKKKVETDMSKLRKDVSEERFPSWDERLDHLLEDQLRVLMVELDSKIEIAKKR 152

Query: 61  IDL 64
           I++
Sbjct: 153 IEI 155

[Close]

BLAST of Cla97C10G191670 vs. TrEMBL
Match: tr|I1KVF3|I1KVF3_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_08G212700 PE=4 SV=2)

HSP 1 Score: 53.5 bits (127), Expect = 4.8e-04
Identity = 38/125 (30.40%), Postives = 57/125 (45.60%), Query Frame = 0


Query: 3   DFFLDRKRKIESETCKLCQKVDDVMCPKWDERLELMSEHELREFMEGLNVKIEAANGMID 62
           DFF +R   IESE  KL ++  ++  P WD  L  M + +LR F+  +N KIEA +  ID
Sbjct: 90  DFFENRNNMIESEISKLHKQAREIKYPSWDPSLSNMGDEQLRAFIANVNAKIEACDQRID 149

Query: 63  LMEADYEDLFGQLCSENSVQMGGDSNPTTPLPNWAS----PNEEEVAMDEFNNSRYLQMG 122
           +++   +D    +   NS+Q    S     + N +     P   E  +   NN R L   
Sbjct: 150 MLKNTNQDEANNI---NSMQNMHGSRQLNFMQNISQSQIIPTPAEPLVLNDNNGRVLNFA 209

Query: 123 LEEEQ 124
               Q
Sbjct: 210 NSTNQ 211

[Close]

BLAST of Cla97C10G191670 vs. TrEMBL
Match: tr|A0A2I4EBE1|A0A2I4EBE1_9ROSI (agamous-like MADS-box protein AGL80 OS=Juglans regia OX=51240 GN=LOC108988069 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.8e-04
Identity = 32/126 (25.40%), Postives = 64/126 (50.79%), Query Frame = 0


Query: 1   MTDFFLDRKRKIESETCKLCQKVDDVMCPKWDERLELMSEHELREFMEGLNVKIEAANGM 60
           ++DFF+DR +++E E  KL + +     P WD+R+EL++E +LR  ++ ++ KIE     
Sbjct: 91  LSDFFVDRNKRVEVEIKKLRKNILKAKYPTWDDRIELLTEDQLRLLLDVMDAKIEGVGLR 150

Query: 61  IDLMEADYEDLFGQLCSENSVQMGGDSNPTTPLPNWASPNEEEVAMDEFNNSRYLQMGLE 120
           I++M+ +   +  +  + + +  GG + P           + EV    FN+ + L     
Sbjct: 151 INMMKGNQNMM--EKATTSRLVAGGRNGP-----------QPEVIRSHFNSMQALYQDQM 203

Query: 121 EEQEVN 127
            +  +N
Sbjct: 211 SKSPLN 203

The following BLAST results are available for this feature:

BLAST of Cla97C10G191670 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022935361.1	5.2e-26	48.21	agamous-like MADS-box protein AGL14 [Cucurbita moschata]	[more]
XP_023528957.1	7.5e-25	48.21	agamous-like MADS-box protein AGL14 [Cucurbita pepo subsp. pepo]	[more]
XP_022983430.1	8.3e-24	48.17	agamous-like MADS-box protein AGL14 [Cucurbita maxima]	[more]
XP_022143272.1	2.9e-08	51.61	uncharacterized protein LOC111013182 isoform X2 [Momordica charantia]	[more]
XP_022143271.1	2.9e-08	51.61	uncharacterized protein LOC111013182 isoform X1 [Momordica charantia]	[more]

BLAST of Cla97C10G191670 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A022Q4W9\|A0A022Q4W9_ERYGU	4.4e-05	32.99	Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a024849mg PE...	[more]
tr\|A0A1S4CC33\|A0A1S4CC33_TOBAC	1.7e-04	30.58	agamous-like MADS-box protein AGL80 OS=Nicotiana tabacum OX=4097 GN=LOC107817389...	[more]
tr\|A0A0A0LME6\|A0A0A0LME6_CUCSA	3.7e-04	41.27	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G336070 PE=4 SV=1	[more]
tr\|I1KVF3\|I1KVF3_SOYBN	4.8e-04	30.40	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_08G212700 PE=4 SV=2	[more]
tr\|A0A2I4EBE1\|A0A2I4EBE1_9ROSI	4.8e-04	25.40	agamous-like MADS-box protein AGL80 OS=Juglans regia OX=51240 GN=LOC108988069 PE...	[more]

BLAST of Cla97C10G191670 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C10G191670 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription from RNA polymerase II promoter
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0000987	core promoter proximal region sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000982	transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C10G191670.1	Cla97C10G191670.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C10G191670	Cla005713	Watermelon (97103) v1	wmwmbB055
Cla97C10G191670	ClCG10G008160	Watermelon (Charleston Gray)	wcgwmbB038

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C10G191670	Melon (DHL92) v3.5.1	mewmbB431
Cla97C10G191670	Silver-seed gourd	carwmbB0988
Cla97C10G191670	Silver-seed gourd	carwmbB1076
Cla97C10G191670	Cucumber (Gy14) v2	cgybwmbB181
Cla97C10G191670	Cucumber (Gy14) v1	cgywmbB447
Cla97C10G191670	Cucurbita maxima (Rimu)	cmawmbB335
Cla97C10G191670	Cucurbita maxima (Rimu)	cmawmbB336
Cla97C10G191670	Cucurbita moschata (Rifu)	cmowmbB319
Cla97C10G191670	Cucurbita maxima (Rimu)	cmawmbB716
Cla97C10G191670	Cucurbita maxima (Rimu)	cmawmbB718
Cla97C10G191670	Cucurbita moschata (Rifu)	cmowmbB322
Cla97C10G191670	Cucurbita moschata (Rifu)	cmowmbB686
Cla97C10G191670	Cucurbita moschata (Rifu)	cmowmbB689
Cla97C10G191670	Wild cucumber (PI 183967)	cpiwmbB194
Cla97C10G191670	Cucumber (Chinese Long) v3	cucwmbB191
Cla97C10G191670	Cucumber (Chinese Long) v2	cuwmbB190
Cla97C10G191670	Bottle gourd (USVL1VR-Ls)	lsiwmbB325
Cla97C10G191670	Bottle gourd (USVL1VR-Ls)	lsiwmbB322
Cla97C10G191670	Melon (DHL92) v3.6.1	medwmbB418
Cla97C10G191670	Melon (DHL92) v3.6.1	medwmbB420
Cla97C10G191670	Melon (DHL92) v3.5.1	mewmbB427
Cla97C10G191670	Wax gourd	wgowmbB012
Cla97C10G191670	Wax gourd	wgowmbB020