Cla97C10G190040 (gene) Watermelon (97103) v2

Overview
NameCla97C10G190040
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionSNW/SKI-interacting protein-like
LocationCla97Chr10 : 6605509 .. 6607496 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCGCCCAACCATACGATATATTGTACATAGTAGGCAGCCTTGTGCCAATAGTGGTGATAAATTACGAGTTCGTGCATCAAAATTTATTGTCTTCGGAGAGAACATTCTTGCATGATACCATCGTGGGGAAGTGCAGTTGCTCTTGAACTTGAATTTGCAGGATGGTTATGTTGAATCAATCAGCTTCTGTCACTTTCTCATATCTACAGTCACGGTTTGAGCAATATAGACATTTGTGTTCCTCTGTCAATGCAGCCTTCTTTTTAATACATAGTTAGGTACAAGGACGAAGTACACATCATAACAGAGGCTTCCTTTAACCATCTGATTATGACAGTCTCCTTTCAACATACAAATACCACACTGTAAGAAATCACACAAACTATAGGTTTACATAGGGAATCATTTTTCTTCTTTTGGCAATAGTAATCTGATCTGATTATTTTGTTGACTCCCCTCTCCTGTTTTTCCACTGATTGGAGTGTATGTTTTGACTTATGAGTTATTAGTTATTTATTGATATAGCTTTGGTTGTAGTTTTGTAGAAGAATGAGAAGGCAGATATTGCATTTTGGCCATAACCTTGTAGACTGAGTTTGTATAAATTTTGGTGACATTAGATTCTCTGTTCTCTTTCTCTCTCTCTCATTCTTTGTATAATAGTTTCTTTTTGGAATAAGAGCTCATCTTAGCATTCCGAAGATGTATAGTTATTTTTGGAATAAGAGTTCATCGAGAATGGTTTCTCTTTGAATGGTCATTTTGTAGAGTATTGATGGTGTTTTTCTTCTTTCCAACGGCGAGGATCTCAATTTTACATGCTTCAATTTATTTCTTCTCTCTTGCTTCATATTTTTCTGGAGCAGGAAAGCTTGTTATAGCACTCAGATGATCTAATTGTACTTTAGACTTGGCAAAGAATGATTTCTCTATAAATACGGAGTCATTGAGTTGAATATCGATGATATTATTCTTGTCTCTGGTGGTGCGAATCATAATTCCTTATGCTATAAATCATTTCTTCTTATGCTTCATATTCACGTGGAACTGGAGATCTCTTCGTAGCACTCCAAGGATCTTGTGGTTTTTTAAAGAATCATTTCTCTATGGACTCGTAGTCCTTGATTTGAACTTTAAGATTATTGTGATTATAATTTGATTTCCAAGTTTGTTTGTTAGAAATGAAGTACTGTAAATCGTGACTAATTATCCTTTGACAAAGAACTCTCAGAAATTGTATTAAACACAGGTAAATTTTTGTTATAGCAAGGTTATGATTCAAGATTCTTAATCTTCTCCCTCCTTAGAATCTATGAAATCATGGTTACATCTTTTCAATTTTGTAGACACCTGGTTGATAACTTCTCTATTCTTCTTTTGTAATTTTTGTTTACTGCATTAACGTCTCAACTTCAGGCTAGCTGTGGGCTGATGAATATTTAAGCTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTGTAAGATAGCTTAACTATCAACTTCCGGCTAGCTTAGCTTAACTATTTATTTATACGTACGTACGCTACATTGATTGGAACATTCTATGTAAATATTAAATTAGTTTAATTACATTGGCAATGTCAAAAAAGTTTGCTGTTTAGTTAGTATACTTTGGATCTCGATTGAAGCCAATTCGACGTTTTTCCTAAAGAGTTCAATCCCCTTATTTGTAAGAGAGATTAATATCCTCCATTTTTCTGCAATATATAACTCTAGTCTGCGTTAATGGTATCTTAGATAAAATGTGTTTGTTAGTTGATCTTTCATAGGCTGTGCAGGGTTCTATTGGGTAGCCAAAATTATGGCAACTCTGAAAGACCTTCCTGCTGTAAAGTCAACAACCATGGCACACGATGGTCACTCAAATGATCCATGGTTGAAGCAGCGGTTTAGTTCATCGGGAGTAGAGCAAACTTGTGTCGTTAAGGCCAATCCTGGGCTTTGTTCCACTTGA

mRNA sequence

ATGCCTCGCCCAACCATACGATATATTGTACATAGTAGGCAGCCTTGTGCCAATAGTGGCTGTGCAGGGTTCTATTGGGTAGCCAAAATTATGGCAACTCTGAAAGACCTTCCTGCTGTAAAGTCAACAACCATGGCACACGATGGTCACTCAAATGATCCATGGTTGAAGCAGCGGTTTAGTTCATCGGGAGTAGAGCAAACTTGTGTCGTTAAGGCCAATCCTGGGCTTTGTTCCACTTGA

Coding sequence (CDS)

ATGCCTCGCCCAACCATACGATATATTGTACATAGTAGGCAGCCTTGTGCCAATAGTGGCTGTGCAGGGTTCTATTGGGTAGCCAAAATTATGGCAACTCTGAAAGACCTTCCTGCTGTAAAGTCAACAACCATGGCACACGATGGTCACTCAAATGATCCATGGTTGAAGCAGCGGTTTAGTTCATCGGGAGTAGAGCAAACTTGTGTCGTTAAGGCCAATCCTGGGCTTTGTTCCACTTGA

Protein sequence

MPRPTIRYIVHSRQPCANSGCAGFYWVAKIMATLKDLPAVKSTTMAHDGHSNDPWLKQRFSSSGVEQTCVVKANPGLCST
Homology
[Close]
BLAST of Cla97C10G190040 vs. NCBI nr
Match: XP_004139354.1 (PREDICTED: SNW/SKI-interacting protein [Cucumis sativus] >XP_011648638.1 PREDICTED: SNW/SKI-interacting protein [Cucumis sativus] >KGN60592.1 hypothetical protein Csa_2G00990 [Cucumis sativus])

HSP 1 Score: 74.7 bits (182), Expect = 1.6e-10
Identity = 37/46 (80.43%), Postives = 38/46 (82.61%), Query Frame = 0 

Query: 31 MATLKD-LPAVKSTTMAHDGHSNDPWLKQRFSSSGVEQTCVVKANP 76
          MATLKD LPAVKSTT+ H  HSNDPW KQRFSSS  EQT VVKANP
Sbjct: 1  MATLKDLLPAVKSTTVTHYDHSNDPWFKQRFSSSEAEQTSVVKANP 46

[Close]
BLAST of Cla97C10G190040 vs. NCBI nr
Match: XP_004149509.1 (PREDICTED: SNW/SKI-interacting protein-like [Cucumis sativus] >KGN61177.1 hypothetical protein Csa_2G061560 [Cucumis sativus])

HSP 1 Score: 72.8 bits (177), Expect = 6.0e-10
Identity = 35/46 (76.09%), Postives = 37/46 (80.43%), Query Frame = 0 

Query: 31 MATLKD-LPAVKSTTMAHDGHSNDPWLKQRFSSSGVEQTCVVKANP 76
          MATLKD LPAVKSTT+ H  HSNDPW KQRFSSS  EQT V+K NP
Sbjct: 1  MATLKDLLPAVKSTTVTHYDHSNDPWFKQRFSSSEAEQTSVIKVNP 46

[Close]
BLAST of Cla97C10G190040 vs. NCBI nr
Match: XP_008451180.1 (PREDICTED: SNW/SKI-interacting protein-like [Cucumis melo])

HSP 1 Score: 72.8 bits (177), Expect = 6.0e-10
Identity = 35/46 (76.09%), Postives = 37/46 (80.43%), Query Frame = 0 

Query: 31 MATLKD-LPAVKSTTMAHDGHSNDPWLKQRFSSSGVEQTCVVKANP 76
          MATLKD LPAVKSTT+ H  HSNDPW KQRFSSS  EQT V+K NP
Sbjct: 1  MATLKDLLPAVKSTTVTHYDHSNDPWFKQRFSSSEAEQTSVIKVNP 46

[Close]
BLAST of Cla97C10G190040 vs. NCBI nr
Match: XP_008458692.1 (PREDICTED: SNW/SKI-interacting protein-like [Cucumis melo] >XP_008458696.1 PREDICTED: SNW/SKI-interacting protein-like [Cucumis melo] >XP_016902181.1 PREDICTED: SNW/SKI-interacting protein-like [Cucumis melo] >XP_016902182.1 PREDICTED: SNW/SKI-interacting protein-like [Cucumis melo])

HSP 1 Score: 72.8 bits (177), Expect = 6.0e-10
Identity = 36/46 (78.26%), Postives = 37/46 (80.43%), Query Frame = 0 

Query: 31 MATLKD-LPAVKSTTMAHDGHSNDPWLKQRFSSSGVEQTCVVKANP 76
          MATLKD LPAVKS T+ H  HSNDPW KQRFSSS  EQT VVKANP
Sbjct: 1  MATLKDLLPAVKSATVTHYDHSNDPWFKQRFSSSEAEQTSVVKANP 46

[Close]
BLAST of Cla97C10G190040 vs. NCBI nr
Match: XP_022929698.1 (SNW/SKI-interacting protein A-like [Cucurbita moschata])

HSP 1 Score: 72.8 bits (177), Expect = 6.0e-10
Identity = 36/46 (78.26%), Postives = 38/46 (82.61%), Query Frame = 0 

Query: 31 MATLKD-LPAVKSTTMAHDGHSNDPWLKQRFSSSGVEQTCVVKANP 76
          MATLKD LPAVKSTT+ H  HS+DPW KQRFSSS  EQT VVKANP
Sbjct: 1  MATLKDLLPAVKSTTVTHYDHSSDPWFKQRFSSSEAEQTSVVKANP 46

[Close]
BLAST of Cla97C10G190040 vs. TrEMBL
Match: tr|A0A0A0LIR8|A0A0A0LIR8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G00990 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.0e-10
Identity = 37/46 (80.43%), Postives = 38/46 (82.61%), Query Frame = 0 

Query: 31 MATLKD-LPAVKSTTMAHDGHSNDPWLKQRFSSSGVEQTCVVKANP 76
          MATLKD LPAVKSTT+ H  HSNDPW KQRFSSS  EQT VVKANP
Sbjct: 1  MATLKDLLPAVKSTTVTHYDHSNDPWFKQRFSSSEAEQTSVVKANP 46

[Close]
BLAST of Cla97C10G190040 vs. TrEMBL
Match: tr|A0A1S4E1T1|A0A1S4E1T1_CUCME (SNW/SKI-interacting protein-like OS=Cucumis melo OX=3656 GN=LOC103498019 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.0e-10
Identity = 36/46 (78.26%), Postives = 37/46 (80.43%), Query Frame = 0 

Query: 31 MATLKD-LPAVKSTTMAHDGHSNDPWLKQRFSSSGVEQTCVVKANP 76
          MATLKD LPAVKS T+ H  HSNDPW KQRFSSS  EQT VVKANP
Sbjct: 1  MATLKDLLPAVKSATVTHYDHSNDPWFKQRFSSSEAEQTSVVKANP 46

[Close]
BLAST of Cla97C10G190040 vs. TrEMBL
Match: tr|A0A1S3BRY8|A0A1S3BRY8_CUCME (SNW/SKI-interacting protein-like OS=Cucumis melo OX=3656 GN=LOC103492552 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.0e-10
Identity = 35/46 (76.09%), Postives = 37/46 (80.43%), Query Frame = 0 

Query: 31 MATLKD-LPAVKSTTMAHDGHSNDPWLKQRFSSSGVEQTCVVKANP 76
          MATLKD LPAVKSTT+ H  HSNDPW KQRFSSS  EQT V+K NP
Sbjct: 1  MATLKDLLPAVKSTTVTHYDHSNDPWFKQRFSSSEAEQTSVIKVNP 46

[Close]
BLAST of Cla97C10G190040 vs. TrEMBL
Match: tr|A0A0A0LKC1|A0A0A0LKC1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G061560 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.0e-10
Identity = 35/46 (76.09%), Postives = 37/46 (80.43%), Query Frame = 0 

Query: 31 MATLKD-LPAVKSTTMAHDGHSNDPWLKQRFSSSGVEQTCVVKANP 76
          MATLKD LPAVKSTT+ H  HSNDPW KQRFSSS  EQT V+K NP
Sbjct: 1  MATLKDLLPAVKSTTVTHYDHSNDPWFKQRFSSSEAEQTSVIKVNP 46

[Close]
BLAST of Cla97C10G190040 vs. TrEMBL
Match: tr|A0A2P5FSR8|A0A2P5FSR8_9ROSA (SKI-interacting protein, SKIP OS=Trema orientalis OX=63057 GN=TorRG33x02_034760 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-06
Identity = 32/47 (68.09%), Postives = 34/47 (72.34%), Query Frame = 0 

Query: 31 MATLKD-LPAVKSTTMAHDGHSNDPWLKQRFSSSGVEQTCVV-KANP 76
          MATLKD LP  KSTT  H  HSNDPW KQRFSSS VE++  V K NP
Sbjct: 1  MATLKDFLPPTKSTTTTHYDHSNDPWFKQRFSSSEVEKSAAVNKPNP 47

[Close]
BLAST of Cla97C10G190040 vs. TAIR10
Match: AT1G77180.1 (chromatin protein family)

HSP 1 Score: 42.7 bits (99), Expect = 1.2e-04
Identity = 19/42 (45.24%), Postives = 25/42 (59.52%), Query Frame = 0 

Query: 31 MATLKDLPAVKSTTMAHDGHSNDPWLKQRFSSSGVEQTCVVK 73
          M +L DLPA KSTT  +  HSND W K R + S   ++  +K
Sbjct: 1  MKSLNDLPAPKSTTTTYYDHSNDAWFKNRVTESETVKSSSIK 42

The following BLAST results are available for this feature:
BLAST of Cla97C10G190040 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004139354.11.6e-1080.43PREDICTED: SNW/SKI-interacting protein [Cucumis sativus] >XP_011648638.1 PREDICT... [more]
XP_004149509.16.0e-1076.09PREDICTED: SNW/SKI-interacting protein-like [Cucumis sativus] >KGN61177.1 hypoth... [more]
XP_008451180.16.0e-1076.09PREDICTED: SNW/SKI-interacting protein-like [Cucumis melo][more]
XP_008458692.16.0e-1078.26PREDICTED: SNW/SKI-interacting protein-like [Cucumis melo] >XP_008458696.1 PREDI... [more]
XP_022929698.16.0e-1078.26SNW/SKI-interacting protein A-like [Cucurbita moschata][more]
BLAST of Cla97C10G190040 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LIR8|A0A0A0LIR8_CUCSA1.0e-1080.43Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G00990 PE=4 SV=1[more]
tr|A0A1S4E1T1|A0A1S4E1T1_CUCME4.0e-1078.26SNW/SKI-interacting protein-like OS=Cucumis melo OX=3656 GN=LOC103498019 PE=4 SV... [more]
tr|A0A1S3BRY8|A0A1S3BRY8_CUCME4.0e-1076.09SNW/SKI-interacting protein-like OS=Cucumis melo OX=3656 GN=LOC103492552 PE=4 SV... [more]
tr|A0A0A0LKC1|A0A0A0LKC1_CUCSA4.0e-1076.09Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G061560 PE=4 SV=1[more]
tr|A0A2P5FSR8|A0A2P5FSR8_9ROSA1.2e-0668.09SKI-interacting protein, SKIP OS=Trema orientalis OX=63057 GN=TorRG33x02_034760 ... [more]
BLAST of Cla97C10G190040 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C10G190040 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G77180.11.2e-0445.24chromatin protein family[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0005681 spliceosomal complex
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C10G190040.1Cla97C10G190040.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C10G190040Melon (DHL92) v3.5.1mewmbB431
Cla97C10G190040Watermelon (97103) v2wmbwmbB050
Cla97C10G190040Watermelon (97103) v2wmbwmbB053
Cla97C10G190040Silver-seed gourdcarwmbB0686
Cla97C10G190040Silver-seed gourdcarwmbB0829
Cla97C10G190040Silver-seed gourdcarwmbB0944
Cla97C10G190040Silver-seed gourdcarwmbB1075
Cla97C10G190040Cucumber (Gy14) v2cgybwmbB016
Cla97C10G190040Cucumber (Gy14) v2cgybwmbB174
Cla97C10G190040Cucumber (Gy14) v1cgywmbB048
Cla97C10G190040Cucurbita maxima (Rimu)cmawmbB018
Cla97C10G190040Cucurbita maxima (Rimu)cmawmbB218
Cla97C10G190040Cucurbita maxima (Rimu)cmawmbB336
Cla97C10G190040Cucurbita maxima (Rimu)cmawmbB444
Cla97C10G190040Cucurbita maxima (Rimu)cmawmbB718
Cla97C10G190040Cucurbita moschata (Rifu)cmowmbB006
Cla97C10G190040Cucurbita moschata (Rifu)cmowmbB202
Cla97C10G190040Cucurbita moschata (Rifu)cmowmbB317
Cla97C10G190040Cucurbita moschata (Rifu)cmowmbB425
Cla97C10G190040Cucurbita moschata (Rifu)cmowmbB689
Cla97C10G190040Wild cucumber (PI 183967)cpiwmbB016
Cla97C10G190040Wild cucumber (PI 183967)cpiwmbB184
Cla97C10G190040Wild cucumber (PI 183967)cpiwmbB441
Cla97C10G190040Cucumber (Chinese Long) v3cucwmbB015
Cla97C10G190040Cucumber (Chinese Long) v3cucwmbB182
Cla97C10G190040Cucumber (Chinese Long) v2cuwmbB181
Cla97C10G190040Bottle gourd (USVL1VR-Ls)lsiwmbB264
Cla97C10G190040Bottle gourd (USVL1VR-Ls)lsiwmbB322
Cla97C10G190040Melon (DHL92) v3.6.1medwmbB416
Cla97C10G190040Melon (DHL92) v3.6.1medwmbB514
Cla97C10G190040Watermelon (Charleston Gray)wcgwmbB038
Cla97C10G190040Watermelon (Charleston Gray)wcgwmbB175
Cla97C10G190040Watermelon (Charleston Gray)wcgwmbB219
Cla97C10G190040Watermelon (97103) v1wmwmbB052
Cla97C10G190040Wax gourdwgowmbB003
Cla97C10G190040Wax gourdwgowmbB555