Cla97C10G187320 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C10G187320
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Root meristem growth factor 6
Location	Cla97Chr10 : 3043722 .. 3044707 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTTATTTGCTTCTCATTCTCTTAATCTTCTTGTCTACTTTGCATCCGTGTGATGCTCATCGTCTTCGATTCTTTGAGAGTTTGAGTTCTGTTTCGAGGATTGAACCTCATTCGATCTCTCGAGGGATATGGACACATCCACCGGAGAAAAGTTTTGACAAAAGCAACAATAACAAGGTTTCTTATAAGGAGATTATTGTTGGGATTGAAATATTAAAGGTATATTACATATATTTCATGTCTCCTTTCTTTGTAATTTAGTTCTTAATTACCAGCTAACAATATGGGGGGAGGGGAGTGTCAAGAGACCATATGAACTAAAACCTTTTTTAGATATGTAGACATTTTCATTGACATTTCTATAGTTTGGAAAGAAACTCAACATCAAAATATATGAGGTGATAATATATTTCCCCCATAAATACTGTTATAAACATGTCAACAAACAAAAAAGATATAATTGTATAATGATCAAGAACTTATCTTGTTTAAAAATTTCAATAATTTCCATAATTTCCATGTTTTTTGGTCGAAATATTTATCGATTTCAATATAATATAATTTTTTTTTTAAAAAAAAAAAGTCAACGTAATATCATTTTATCTTTATTTCTATTTACATTTGTATAAACTTGAAATCTCATCATTTTCATTGTCATCAACATTTAATTCTTGGATCACAAGACCAATATATGAATATAGACAACATTTAATTTCTTGGATCATGATGAGTTTATTGATATAGACAAAGGCACATGAATGATAAATGAATGAAAAAATAGATTTTTGAAATATAGTGAGTGACATTATTGGACTTTGGCATTTTAGCAGGGAATGAAGAAGCATGGAAGCAGATTGGTAATGGAGTTTCCAATGAAAGAAAAAGAGTTGAATTCTAAGGAAAATGAGGTTGGAGAAGACATGGTAGTGATGGATTATGCACAACCCCACAGAAAGCCTCCTATTCACAATGAAAAACCTTAG

mRNA sequence

ATGCCTTATTTGCTTCTCATTCTCTTAATCTTCTTGTCTACTTTGCATCCGTGTGATGCTCATCGTCTTCGATTCTTTGAGAGTTTGAGTTCTGTTTCGAGGATTGAACCTCATTCGATCTCTCGAGGGATATGGACACATCCACCGGAGAAAAGTTTTGACAAAAGCAACAATAACAAGGTTTCTTATAAGGAGATTATTGTTGGGATTGAAATATTAAAGGGAATGAAGAAGCATGGAAGCAGATTGGTAATGGAGTTTCCAATGAAAGAAAAAGAGTTGAATTCTAAGGAAAATGAGGTTGGAGAAGACATGGTAGTGATGGATTATGCACAACCCCACAGAAAGCCTCCTATTCACAATGAAAAACCTTAG

Coding sequence (CDS)

ATGCCTTATTTGCTTCTCATTCTCTTAATCTTCTTGTCTACTTTGCATCCGTGTGATGCTCATCGTCTTCGATTCTTTGAGAGTTTGAGTTCTGTTTCGAGGATTGAACCTCATTCGATCTCTCGAGGGATATGGACACATCCACCGGAGAAAAGTTTTGACAAAAGCAACAATAACAAGGTTTCTTATAAGGAGATTATTGTTGGGATTGAAATATTAAAGGGAATGAAGAAGCATGGAAGCAGATTGGTAATGGAGTTTCCAATGAAAGAAAAAGAGTTGAATTCTAAGGAAAATGAGGTTGGAGAAGACATGGTAGTGATGGATTATGCACAACCCCACAGAAAGCCTCCTATTCACAATGAAAAACCTTAG

Protein sequence

MPYLLLILLIFLSTLHPCDAHRLRFFESLSSVSRIEPHSISRGIWTHPPEKSFDKSNNNKVSYKEIIVGIEILKGMKKHGSRLVMEFPMKEKELNSKENEVGEDMVVMDYAQPHRKPPIHNEKP

Homology

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BLAST of Cla97C10G187320 vs. NCBI nr
Match: XP_011650407.1 (PREDICTED: uncharacterized protein LOC105434783 [Cucumis sativus] >KGN55873.1 hypothetical protein Csa_3G020610 [Cucumis sativus])

HSP 1 Score: 176.8 bits (447), Expect = 4.6e-41
Identity = 94/128 (73.44%), Postives = 107/128 (83.59%), Query Frame = 0


Query: 1   MPYLLLILLIFLSTLHPCDAHRLRFFESLSSVSRI-EPHSISRGIWT--HPPEKSFDKSN 60
           MPY  LILL F STLH CDA RLRFF+S + VSRI E HS+S+GIW+  H  E SFDK+N
Sbjct: 3   MPYFFLILLFFSSTLHACDASRLRFFQSSNFVSRINELHSMSQGIWSINHDQEGSFDKNN 62

Query: 61  NNKVSY-KEIIVGIEILKGMKKHGSRLVMEFPMKEKELNSKENEVGEDMVVMDYAQPHRK 120
           N+ + + KE I+GIE+LKGMK+ GSRLVMEFPMKEK +NSKENEVGEDMVVMDYAQPHRK
Sbjct: 63  NDNILHNKENIIGIEMLKGMKRDGSRLVMEFPMKEKVMNSKENEVGEDMVVMDYAQPHRK 122

Query: 121 PPIHNEKP 125
           PPIHNEKP
Sbjct: 123 PPIHNEKP 130

[Close]

BLAST of Cla97C10G187320 vs. NCBI nr
Match: XP_022154042.1 (uncharacterized protein LOC111021396 [Momordica charantia])

HSP 1 Score: 119.4 bits (298), Expect = 8.7e-24
Identity = 77/127 (60.63%), Postives = 92/127 (72.44%), Query Frame = 0


Query: 2   PYLLLILLIFLSTLHPCDA-HRLRFFESLSSVSRIEPHS-ISRGIWTHPPEKSFDKSNNN 61
           P LL ILL  LSTLH CDA HRL+ FE  + VSR+   + I +   T  PE+S +K+  +
Sbjct: 4   PSLLFILL--LSTLHACDACHRLQLFEYSNPVSRLGLLAPIPQEFRTDQPERSLNKNIIH 63

Query: 62  KVSYKEIIVGIEILKGMKKHGSRLVMEFPMKEKE--LNSKENEVGEDMVVMDYAQPHRKP 121
           KVS   + +GI ILKGMKKH  RL MEF MKEKE  ++ +ENEVGEDMVVMDYAQPHRKP
Sbjct: 64  KVS-SSVEIGIGILKGMKKH-KRLAMEFSMKEKEKLMSYEENEVGEDMVVMDYAQPHRKP 123

Query: 122 PIHNEKP 125
           PIHN+KP
Sbjct: 124 PIHNKKP 126

[Close]

BLAST of Cla97C10G187320 vs. NCBI nr
Match: XP_023540680.1 (uncharacterized protein LOC111800973 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 113.2 bits (282), Expect = 6.2e-22
Identity = 74/133 (55.64%), Postives = 88/133 (66.17%), Query Frame = 0


Query: 1   MPYLLLILLIFLST-LHPCDAHRLRFFESLSSVSRIEPHSISRGIWTHPPEKSFDKSNNN 60
           MP    + L+FLST LH CDA  L+   S    SR+E   IS G  T+  E+S D+S +N
Sbjct: 3   MPTSFFLALLFLSTFLHACDARLLKLCHS----SRLESCLISPGFRTNQLERSLDESKSN 62

Query: 61  KVSYKEIIVGIEILKGMKKHGSRLVMEFPMKE--------KELNSKENEVGEDMVVMDYA 120
            VS  E  VGIEILKGMKK   RL ME P+++        K +NS+ENEVGEDMVVMDYA
Sbjct: 63  DVSSME-NVGIEILKGMKKL-RRLAMELPVRDXXXXXXXXKVVNSEENEVGEDMVVMDYA 122

Query: 121 QPHRKPPIHNEKP 125
           QPHRKPPIHN+KP
Sbjct: 123 QPHRKPPIHNQKP 129

[Close]

BLAST of Cla97C10G187320 vs. NCBI nr
Match: XP_023005579.1 (uncharacterized protein LOC111498521 [Cucurbita maxima])

HSP 1 Score: 108.6 bits (270), Expect = 1.5e-20
Identity = 74/135 (54.81%), Postives = 85/135 (62.96%), Query Frame = 0


Query: 1   MPYLLLILLIFLST-LHPCDAHRLRFFESLSSVSRIEPHSISRGIWTHPPEKSFDKSNNN 60
           MP  L + L+FLST LH CDA  L+   S    SR+E   IS G      ++S DKS +N
Sbjct: 3   MPTSLFLALLFLSTFLHACDARLLKLCHS----SRLESCMISPGFRMDQLKRSLDKSKSN 62

Query: 61  KVSYKEIIVGIEILKGMKKHGSRLVMEFPM----------KEKELNSKENEVGEDMVVMD 120
           +VS  E  VGIEILKGMKK   RL ME P+            K +NS+ENEVGEDMVVMD
Sbjct: 63  EVSSVE-NVGIEILKGMKKL-RRLAMELPVXXXXXXXXXXXXKVVNSEENEVGEDMVVMD 122

Query: 121 YAQPHRKPPIHNEKP 125
           YAQPHRKPPIHN KP
Sbjct: 123 YAQPHRKPPIHNRKP 131

[Close]

BLAST of Cla97C10G187320 vs. NCBI nr
Match: XP_024019613.1 (uncharacterized protein LOC21402007 [Morus notabilis])

HSP 1 Score: 62.0 bits (149), Expect = 1.6e-06
Identity = 31/56 (55.36%), Postives = 40/56 (71.43%), Query Frame = 0


Query: 70  IEILKGMKKHGSRLVMEFPM-KEKELNSKENEVGEDMVVMDYAQPHRKPPIHNEKP 125
           IE  KG + HG  ++   P   E+ +++KE +  ED+VVMDYAQPHRKPPIHNEKP
Sbjct: 134 IETSKGQEGHGRSMLGFVPQDTEEAVDTKEGDAVEDIVVMDYAQPHRKPPIHNEKP 189

[Close]

BLAST of Cla97C10G187320 vs. TrEMBL
Match: tr|A0A0A0L298|A0A0A0L298_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G020610 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 3.0e-41
Identity = 94/128 (73.44%), Postives = 107/128 (83.59%), Query Frame = 0


Query: 1   MPYLLLILLIFLSTLHPCDAHRLRFFESLSSVSRI-EPHSISRGIWT--HPPEKSFDKSN 60
           MPY  LILL F STLH CDA RLRFF+S + VSRI E HS+S+GIW+  H  E SFDK+N
Sbjct: 3   MPYFFLILLFFSSTLHACDASRLRFFQSSNFVSRINELHSMSQGIWSINHDQEGSFDKNN 62

Query: 61  NNKVSY-KEIIVGIEILKGMKKHGSRLVMEFPMKEKELNSKENEVGEDMVVMDYAQPHRK 120
           N+ + + KE I+GIE+LKGMK+ GSRLVMEFPMKEK +NSKENEVGEDMVVMDYAQPHRK
Sbjct: 63  NDNILHNKENIIGIEMLKGMKRDGSRLVMEFPMKEKVMNSKENEVGEDMVVMDYAQPHRK 122

Query: 121 PPIHNEKP 125
           PPIHNEKP
Sbjct: 123 PPIHNEKP 130

[Close]

BLAST of Cla97C10G187320 vs. TrEMBL
Match: tr|W9QUJ9|W9QUJ9_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_019053 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.1e-06
Identity = 31/56 (55.36%), Postives = 40/56 (71.43%), Query Frame = 0


Query: 70  IEILKGMKKHGSRLVMEFPM-KEKELNSKENEVGEDMVVMDYAQPHRKPPIHNEKP 125
           IE  KG + HG  ++   P   E+ +++KE +  ED+VVMDYAQPHRKPPIHNEKP
Sbjct: 138 IETSKGQEGHGRSMLGFVPQDTEEAVDTKEGDAVEDIVVMDYAQPHRKPPIHNEKP 193

[Close]

BLAST of Cla97C10G187320 vs. TrEMBL
Match: tr|A0A2C9WK42|A0A2C9WK42_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_01G079300 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.2e-06
Identity = 34/76 (44.74%), Postives = 44/76 (57.89%), Query Frame = 0


Query: 49  PEKSFDKSNNNKVSYKEIIVGIEILKGMKKHGSRLVMEFPMKEKELNSKENEVGEDMVVM 108
           PE S    +   VS +  +     ++G+KK            +K L S EN++ ED+VVM
Sbjct: 77  PENSLGAGHKLIVSSQRNLQQTAKIEGLKKQAR------SYNKKALESGENDIVEDVVVM 136

Query: 109 DYAQPHRKPPIHNEKP 125
           DYAQPHRKPPIHNEKP
Sbjct: 137 DYAQPHRKPPIHNEKP 146

[Close]

BLAST of Cla97C10G187320 vs. TrEMBL
Match: tr|A0A2C9WK84|A0A2C9WK84_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_01G079300 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.1e-06
Identity = 34/83 (40.96%), Postives = 45/83 (54.22%), Query Frame = 0


Query: 42  RGIWTHPPEKSFDKSNNNKVSYKEIIVGIEILKGMKKHGSRLVMEFPMKEKELNSKENEV 101
           + + T P E+   K   +   +K I+     L+   K            +K L S EN++
Sbjct: 88  KNVETLPKEEEGTKKKPSGAGHKLIVSSQRNLQQTAKIEGLKKQARSYNKKALESGENDI 147

Query: 102 GEDMVVMDYAQPHRKPPIHNEKP 125
            ED+VVMDYAQPHRKPPIHNEKP
Sbjct: 148 VEDVVVMDYAQPHRKPPIHNEKP 170

[Close]

BLAST of Cla97C10G187320 vs. TrEMBL
Match: tr|M1A0Y7|M1A0Y7_SOLTU (Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 7.0e-06
Identity = 34/74 (45.95%), Postives = 50/74 (67.57%), Query Frame = 0


Query: 54  DKSNNNKVSYKEIIVGIEILKGMKKHGSRLVMEFPM----KEKELNSKENEVGEDMVVMD 113
           +K N  ++S+ E   G ++   + +  SRL++E P+    +E+ +NS E E+ ED+VVMD
Sbjct: 84  NKGNKVEISFHE---GAQV--KISRRESRLMLESPLSTQHEEEAVNSIEKELVEDVVVMD 143

Query: 114 YAQPHRKPPIHNEK 124
           YAQPHRKPPIHN K
Sbjct: 144 YAQPHRKPPIHNTK 152

[Close]

BLAST of Cla97C10G187320 vs. Swiss-Prot
Match: sp|Q93VK8|RGF6_ARATH (Root meristem growth factor 6 OS=Arabidopsis thaliana OX=3702 GN=RGF6 PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 6.1e-05
Identity = 20/24 (83.33%), Postives = 22/24 (91.67%), Query Frame = 0


Query: 100 EVGEDMVVMDYAQPHRKPPIHNEK 124
           E GE++VVMDY QPHRKPPIHNEK
Sbjct: 62  ETGEEVVVMDYPQPHRKPPIHNEK 85

[Close]

BLAST of Cla97C10G187320 vs. TAIR10
Match: AT4G16515.1 (Encodes a root meristem growth factor (RGF). )

HSP 1 Score: 48.5 bits (114), Expect = 3.4e-06
Identity = 20/24 (83.33%), Postives = 22/24 (91.67%), Query Frame = 0


Query: 100 EVGEDMVVMDYAQPHRKPPIHNEK 124
           E GE++VVMDY QPHRKPPIHNEK
Sbjct: 62  ETGEEVVVMDYPQPHRKPPIHNEK 85

The following BLAST results are available for this feature:

BLAST of Cla97C10G187320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011650407.1	4.6e-41	73.44	PREDICTED: uncharacterized protein LOC105434783 [Cucumis sativus] >KGN55873.1 hy...	[more]
XP_022154042.1	8.7e-24	60.63	uncharacterized protein LOC111021396 [Momordica charantia]	[more]
XP_023540680.1	6.2e-22	55.64	uncharacterized protein LOC111800973 [Cucurbita pepo subsp. pepo]	[more]
XP_023005579.1	1.5e-20	54.81	uncharacterized protein LOC111498521 [Cucurbita maxima]	[more]
XP_024019613.1	1.6e-06	55.36	uncharacterized protein LOC21402007 [Morus notabilis]	[more]

BLAST of Cla97C10G187320 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L298\|A0A0A0L298_CUCSA	3.0e-41	73.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G020610 PE=4 SV=1	[more]
tr\|W9QUJ9\|W9QUJ9_9ROSA	1.1e-06	55.36	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_019053 PE=4 SV=1	[more]
tr\|A0A2C9WK42\|A0A2C9WK42_MANES	3.2e-06	44.74	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_01G079300 PE=4 SV=...	[more]
tr\|A0A2C9WK84\|A0A2C9WK84_MANES	4.1e-06	40.96	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_01G079300 PE=4 SV=...	[more]
tr\|M1A0Y7\|M1A0Y7_SOLTU	7.0e-06	45.95	Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1	[more]

BLAST of Cla97C10G187320 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q93VK8\|RGF6_ARATH	6.1e-05	83.33	Root meristem growth factor 6 OS=Arabidopsis thaliana OX=3702 GN=RGF6 PE=3 SV=1	[more]

BLAST of Cla97C10G187320 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G16515.1	3.4e-06	83.33	Encodes a root meristem growth factor (RGF).	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR018247	EF_Hand_1_Ca_BS

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C10G187320.1	Cla97C10G187320.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34961	FAMILY NOT NAMED	coord: 75..124
None	No IPR available	PANTHER	PTHR34961:SF1	SUBFAMILY NOT NAMED	coord: 75..124
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 54..66

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C10G187320	Cla005648	Watermelon (97103) v1	wmwmbB053
Cla97C10G187320	Csa3G020610	Cucumber (Chinese Long) v2	cuwmbB181
Cla97C10G187320	ClCG10G002770	Watermelon (Charleston Gray)	wcgwmbB038
Cla97C10G187320	CSPI03G02770	Wild cucumber (PI 183967)	cpiwmbB184
Cla97C10G187320	CmaCh06G007780	Cucurbita maxima (Rimu)	cmawmbB845
Cla97C10G187320	CmoCh06G007980	Cucurbita moschata (Rifu)	cmowmbB819
Cla97C10G187320	Lsi07G013060	Bottle gourd (USVL1VR-Ls)	lsiwmbB395
Cla97C10G187320	CsGy3G002700	Cucumber (Gy14) v2	cgybwmbB174
Cla97C10G187320	Carg25167	Silver-seed gourd	carwmbB0555
Cla97C10G187320	CsaV3_3G002810	Cucumber (Chinese Long) v3	cucwmbB182
Cla97C10G187320	Bhi11G000171	Wax gourd	wgowmbB006

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C10G187320	Melon (DHL92) v3.5.1	mewmbB430
Cla97C10G187320	Watermelon (97103) v2	wmbwmbB002
Cla97C10G187320	Cucumber (Gy14) v2	cgybwmbB339
Cla97C10G187320	Cucumber (Gy14) v1	cgywmbB521
Cla97C10G187320	Cucumber (Gy14) v1	cgywmbB562
Cla97C10G187320	Cucurbita maxima (Rimu)	cmawmbB290
Cla97C10G187320	Cucurbita maxima (Rimu)	cmawmbB333
Cla97C10G187320	Cucurbita moschata (Rifu)	cmowmbB272
Cla97C10G187320	Cucurbita moschata (Rifu)	cmowmbB315
Cla97C10G187320	Wild cucumber (PI 183967)	cpiwmbB372
Cla97C10G187320	Cucumber (Chinese Long) v3	cucwmbB372
Cla97C10G187320	Cucumber (Chinese Long) v2	cuwmbB356
Cla97C10G187320	Melon (DHL92) v3.6.1	medwmbB010
Cla97C10G187320	Melon (DHL92) v3.6.1	medwmbB415
Cla97C10G187320	Melon (DHL92) v3.5.1	mewmbB012
Cla97C10G187320	Watermelon (Charleston Gray)	wcgwmbB094
Cla97C10G187320	Watermelon (97103) v1	wmwmbB254
Cla97C10G187320	Wax gourd	wgowmbB068