Cla97C09G184360 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C09G184360
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Scorpion toxin-like knottin superfamily protein
Location	Cla97Chr09 : 37434254 .. 37434581 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGGATCAGAAGAATGGAGAAAGCTCACAATTGTGTTGTTCATCTTCCTATCCCTTGCTTCTGGTACTAGATCTCATCCGATGCGATCCTCCTGGTTGTTTAATTTTGTGGTTTAATATCTTTATTATAATAATGAAAATAGAGAGTAATAGAAGTTGTGTTGTGTTGTTGCTTACAGGATGGATGGTGGCGGAGACGGAAGGAAGGGCTTGCTACCGGCCGAGCCCGTCGTTCAAGGGACGGTGTAGTTCGGATGAAGATTGTATTGGAGTTTGCGACGGATTTTGCAACCATGGTTCGTGCATCTGTACTGTGCCTTGCTGA

mRNA sequence

ATGGCGGGATCAGAAGAATGGAGAAAGCTCACAATTGTGTTGTTCATCTTCCTATCCCTTGCTTCTGGATGGATGGTGGCGGAGACGGAAGGAAGGGCTTGCTACCGGCCGAGCCCGTCGTTCAAGGGACGGTGTAGTTCGGATGAAGATTGTATTGGAGTTTGCGACGGATTTTGCAACCATGGTTCGTGCATCTGTACTGTGCCTTGCTGA

Coding sequence (CDS)

ATGGCGGGATCAGAAGAATGGAGAAAGCTCACAATTGTGTTGTTCATCTTCCTATCCCTTGCTTCTGGATGGATGGTGGCGGAGACGGAAGGAAGGGCTTGCTACCGGCCGAGCCCGTCGTTCAAGGGACGGTGTAGTTCGGATGAAGATTGTATTGGAGTTTGCGACGGATTTTGCAACCATGGTTCGTGCATCTGTACTGTGCCTTGCTGA

Protein sequence

MAGSEEWRKLTIVLFIFLSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVCDGFCNHGSCICTVPC

Homology

[Close]

BLAST of Cla97C09G184360 vs. NCBI nr
Match: AHA50469.1 (defensin-like protein 3 [Citrullus lanatus])

HSP 1 Score: 155.6 bits (392), Expect = 6.2e-35
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MAGSEEWRKLTIVLFIFLSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVCDGFCN 60
          MAGSEEWRKLTIVLFIFLSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVCDGFCN
Sbjct: 1  MAGSEEWRKLTIVLFIFLSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVCDGFCN 60

Query: 61 HGSCICTVPC 71
          HGSCICTVPC
Sbjct: 61 HGSCICTVPC 70

[Close]

BLAST of Cla97C09G184360 vs. NCBI nr
Match: KGN44293.1 (hypothetical protein Csa_7G239060 [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 7.8e-14
Identity = 41/77 (53.25%), Postives = 55/77 (71.43%), Query Frame = 0


Query: 1  MAGSEEWRKLTIVLFIF-LSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVC---- 60
          MAG   W+KLT V FIF L++ASGWM+ ET G+ C++ S SFKG+C S+++C+  C    
Sbjct: 1  MAGG--WKKLTFVAFIFLLAIASGWMMVETAGKICFKQSRSFKGKCISNDECVKACDTDM 60

Query: 61 --DGFCNHGSCICTVPC 71
            DGFC++G CICTV C
Sbjct: 61 WYDGFCSNGLCICTVIC 75

[Close]

BLAST of Cla97C09G184360 vs. NCBI nr
Match: XP_022931766.1 (defensin Tk-AMP-D4-like [Cucurbita moschata])

HSP 1 Score: 74.7 bits (182), Expect = 1.4e-10
Identity = 37/77 (48.05%), Postives = 47/77 (61.04%), Query Frame = 0


Query: 1  MAGSEEWRKLTIVLFIFLSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVC----- 60
          MAG +  R L +V+FIFL+LASGWMV +TEGR CY+ + +F G C+S   C   C     
Sbjct: 1  MAG-QSLRNLKVVVFIFLALASGWMVVQTEGRTCYKHNDAFIGSCTSTAACADFCITFEG 60

Query: 61 --DGFCNHGSCICTVPC 71
            DGFC+   C CT  C
Sbjct: 61 WDDGFCSGDKCTCTKQC 76

[Close]

BLAST of Cla97C09G184360 vs. NCBI nr
Match: XP_023520732.1 (defensin-like protein 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 72.4 bits (176), Expect = 6.9e-10
Identity = 34/70 (48.57%), Postives = 43/70 (61.43%), Query Frame = 0


Query: 8  RKLTIVLFIFLSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVC-------DGFCN 67
          R L +V+FIFL+LASGWMV +TEGR CY+ + +F G C+S   C   C       DGFC+
Sbjct: 7  RNLKVVVFIFLALASGWMVVQTEGRTCYKHNDAFIGPCTSTAACADFCISFEGWDDGFCS 66

Query: 68 HGSCICTVPC 71
             C CT  C
Sbjct: 67 GDKCTCTKQC 76

[Close]

BLAST of Cla97C09G184360 vs. NCBI nr
Match: XP_022961379.1 (defensin-like protein 2 [Cucurbita moschata])

HSP 1 Score: 70.1 bits (170), Expect = 3.4e-09
Identity = 35/75 (46.67%), Postives = 45/75 (60.00%), Query Frame = 0


Query: 3  GSEEWRKLTIVLFIFLSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVC------- 62
          G +  R L IV+FIFL+L SGWMVA+TEGR CY+ S +F G C  +E C  +C       
Sbjct: 2  GGQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPC-IEETCAELCISFEKWD 61

Query: 63 DGFCNHGSCICTVPC 71
           GFC+   C C+  C
Sbjct: 62 GGFCSGDKCTCSKQC 75

[Close]

BLAST of Cla97C09G184360 vs. TrEMBL
Match: tr|W5RQN1|W5RQN1_CITLA (Defensin-like protein 3 OS=Citrullus lanatus OX=3654 GN=PDF2.3 PE=2 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 4.1e-35
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MAGSEEWRKLTIVLFIFLSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVCDGFCN 60
          MAGSEEWRKLTIVLFIFLSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVCDGFCN
Sbjct: 1  MAGSEEWRKLTIVLFIFLSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVCDGFCN 60

Query: 61 HGSCICTVPC 71
          HGSCICTVPC
Sbjct: 61 HGSCICTVPC 70

[Close]

BLAST of Cla97C09G184360 vs. TrEMBL
Match: tr|A0A0A0K447|A0A0A0K447_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G239060 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 5.2e-14
Identity = 41/77 (53.25%), Postives = 55/77 (71.43%), Query Frame = 0


Query: 1  MAGSEEWRKLTIVLFIF-LSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVC---- 60
          MAG   W+KLT V FIF L++ASGWM+ ET G+ C++ S SFKG+C S+++C+  C    
Sbjct: 1  MAGG--WKKLTFVAFIFLLAIASGWMMVETAGKICFKQSRSFKGKCISNDECVKACDTDM 60

Query: 61 --DGFCNHGSCICTVPC 71
            DGFC++G CICTV C
Sbjct: 61 WYDGFCSNGLCICTVIC 75

The following BLAST results are available for this feature:

BLAST of Cla97C09G184360 vs. NCBI nr


Match Name	E-value	Identity	Description
AHA50469.1	6.2e-35	100.00	defensin-like protein 3 [Citrullus lanatus]	[more]
KGN44293.1	7.8e-14	53.25	hypothetical protein Csa_7G239060 [Cucumis sativus]	[more]
XP_022931766.1	1.4e-10	48.05	defensin Tk-AMP-D4-like [Cucurbita moschata]	[more]
XP_023520732.1	6.9e-10	48.57	defensin-like protein 2 [Cucurbita pepo subsp. pepo]	[more]
XP_022961379.1	3.4e-09	46.67	defensin-like protein 2 [Cucurbita moschata]	[more]

BLAST of Cla97C09G184360 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|W5RQN1\|W5RQN1_CITLA	4.1e-35	100.00	Defensin-like protein 3 OS=Citrullus lanatus OX=3654 GN=PDF2.3 PE=2 SV=1	[more]
tr\|A0A0A0K447\|A0A0A0K447_CUCSA	5.2e-14	53.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G239060 PE=4 SV=1	[more]

BLAST of Cla97C09G184360 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C09G184360 vs. TAIR10


Match Name	E-value	Identity	Description

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006952	defense response

Vocabulary: **INTERPRO**
Term	Definition
IPR008176	Defensin_plant
IPR036574	Scorpion_toxin-like_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C09G184360.1	Cla97C09G184360.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036574	Knottin, scorpion toxin-like superfamily	GENE3D	G3DSA:3.30.30.10		coord: 26..70 e-value: 8.8E-7 score: 30.6
IPR008176	Defensin, plant	PROSITE	PS00940	GAMMA_THIONIN	coord: 32..55

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C09G184360	Wax gourd	wgowmbB271
Cla97C09G184360	Wax gourd	wgowmbB394
Cla97C09G184360	Watermelon (97103) v2	wmbwmbB111
Cla97C09G184360	Silver-seed gourd	carwmbB0355
Cla97C09G184360	Silver-seed gourd	carwmbB0417
Cla97C09G184360	Silver-seed gourd	carwmbB0559
Cla97C09G184360	Cucumber (Gy14) v2	cgybwmbB485
Cla97C09G184360	Cucumber (Gy14) v2	cgybwmbB531
Cla97C09G184360	Cucumber (Gy14) v1	cgywmbB184
Cla97C09G184360	Cucumber (Gy14) v1	cgywmbB424
Cla97C09G184360	Cucurbita maxima (Rimu)	cmawmbB150
Cla97C09G184360	Cucurbita maxima (Rimu)	cmawmbB547
Cla97C09G184360	Cucurbita maxima (Rimu)	cmawmbB597
Cla97C09G184360	Cucurbita moschata (Rifu)	cmowmbB131
Cla97C09G184360	Cucurbita moschata (Rifu)	cmowmbB528
Cla97C09G184360	Cucurbita moschata (Rifu)	cmowmbB573
Cla97C09G184360	Wild cucumber (PI 183967)	cpiwmbB535
Cla97C09G184360	Wild cucumber (PI 183967)	cpiwmbB585
Cla97C09G184360	Cucumber (Chinese Long) v3	cucwmbB528
Cla97C09G184360	Cucumber (Chinese Long) v3	cucwmbB582
Cla97C09G184360	Cucumber (Chinese Long) v2	cuwmbB509
Cla97C09G184360	Cucumber (Chinese Long) v2	cuwmbB559
Cla97C09G184360	Bottle gourd (USVL1VR-Ls)	lsiwmbB071
Cla97C09G184360	Bottle gourd (USVL1VR-Ls)	lsiwmbB109
Cla97C09G184360	Melon (DHL92) v3.6.1	medwmbB120
Cla97C09G184360	Melon (DHL92) v3.6.1	medwmbB213
Cla97C09G184360	Melon (DHL92) v3.5.1	mewmbB131
Cla97C09G184360	Melon (DHL92) v3.5.1	mewmbB227
Cla97C09G184360	Watermelon (Charleston Gray)	wcgwmbB035
Cla97C09G184360	Watermelon (Charleston Gray)	wcgwmbB169
Cla97C09G184360	Watermelon (97103) v1	wmwmbB042
Cla97C09G184360	Watermelon (97103) v1	wmwmbB350