Cla97C09G183730 (gene) Watermelon (97103) v2

Overview
NameCla97C09G183730
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
Description60S ribosomal export protein NMD3
LocationCla97Chr09 : 36973812 .. 36974658 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGGCTTCTGTTCAACTCAGGCAGCACGTCTCGCACCGGCGTACATTTTTCTTCTTGGAGCAACTGATACTCAAGCACGGTGCTGCTGCTCGCGCAATAAGAATCAAACAGATGGATCAAGGTATTGACTTCTTCTTTTCTAATAGGAGTCATGGTGTTAAGTTTGTGGAATTTATTGGAAAGGTTGCTCCAATTAGGAGTCGCCATGATTAACAACTTGTTTCTCATGATCCTAAGAGTAACATTCACAACCATAAGCACACTTTCTCTGTTGAAATATCCCCAATATGCCGCGAGGATTTGATATGTTTGCCTCCTAAAGTTGCTGTTAGTTTGGGCAATCTTGGTCCTCTTGTAATTTGCACTAAAGTTACAAATGCCATTGCTTTACTTGATCCATTCACCTTAAGGCACTGTTTCTTGGATGCTGATCAGTATTGGACATCTTTTAGGTCTCTACTTACTAGCAGGCAACTTGTGGAATATATTGTATTGGATATAGAGAATGTTTCTACTGAAGTCAATGTTGGTGGATCAAAGTATATTTTGGCTGATGCTCAAGTAACTCGTGTATCGGATTTTGGAAGGAATGACACAATATTCTTCATAAGAACCCATCTAGGACATATTCTAAACCCGGGGGATTATGCCCTTGGTTATGATCTCTATGGAGCCAATAGTAATAATATGGAGCTTGAAAAATATAAGGGTCTTGAGCTTCCAGAAGCAATTTTAATCAAGAAAAGTTACGAAGAAAAGTGTCAGAGAAAGCGTGGAAAGCCTAGATCATGTCTCTTGAAATGGATGTTGATGATAAAGGTAGAGCAGAGGAAGATATTATGA

mRNA sequence

ATGGGTGGCTTCTGTTCAACTCAGGCAGCACGTCTCGCACCGGCGTACATTTTTCTTCTTGGAGCAACTGATACTCAAGCACGGTGCTGCTGCTCGCGCAATAAGAATCAAACAGATGGATCAAGGTCTCTACTTACTAGCAGGCAACTTGTGGAATATATTGTATTGGATATAGAGAATGTTTCTACTGAAGTCAATGTTGGTGGATCAAAGTATATTTTGGCTGATGCTCAAGTAACTCGTGTATCGGATTTTGGAAGGAATGACACAATATTCTTCATAAGAACCCATCTAGGACATATTCTAAACCCGGGGGATTATGCCCTTGGTTATGATCTCTATGGAGCCAATAGTAATAATATGGAGCTTGAAAAATATAAGGGTCTTGAGCTTCCAGAAGCAATTTTAATCAAGAAAAGTTACGAAGAAAAGTGTCAGAGAAAGCGTGGAAAGCCTAGATCATGTCTCTTGAAATGGATGTTGATGATAAAGGTAGAGCAGAGGAAGATATTATGA

Coding sequence (CDS)

ATGGGTGGCTTCTGTTCAACTCAGGCAGCACGTCTCGCACCGGCGTACATTTTTCTTCTTGGAGCAACTGATACTCAAGCACGGTGCTGCTGCTCGCGCAATAAGAATCAAACAGATGGATCAAGGTCTCTACTTACTAGCAGGCAACTTGTGGAATATATTGTATTGGATATAGAGAATGTTTCTACTGAAGTCAATGTTGGTGGATCAAAGTATATTTTGGCTGATGCTCAAGTAACTCGTGTATCGGATTTTGGAAGGAATGACACAATATTCTTCATAAGAACCCATCTAGGACATATTCTAAACCCGGGGGATTATGCCCTTGGTTATGATCTCTATGGAGCCAATAGTAATAATATGGAGCTTGAAAAATATAAGGGTCTTGAGCTTCCAGAAGCAATTTTAATCAAGAAAAGTTACGAAGAAAAGTGTCAGAGAAAGCGTGGAAAGCCTAGATCATGTCTCTTGAAATGGATGTTGATGATAAAGGTAGAGCAGAGGAAGATATTATGA

Protein sequence

MGGFCSTQAARLAPAYIFLLGATDTQARCCCSRNKNQTDGSRSLLTSRQLVEYIVLDIENVSTEVNVGGSKYILADAQVTRVSDFGRNDTIFFIRTHLGHILNPGDYALGYDLYGANSNNMELEKYKGLELPEAILIKKSYEEKCQRKRGKPRSCLLKWMLMIKVEQRKIL
Homology
[Close]
BLAST of Cla97C09G183730 vs. NCBI nr
Match: XP_008440695.1 (PREDICTED: 60S ribosomal export protein NMD3 [Cucumis melo])

HSP 1 Score: 208.0 bits (528), Expect = 2.6e-50
Identity = 109/146 (74.66%), Postives = 120/146 (82.19%), Query Frame = 0 

Query: 25  TQARCCCSRNKNQTDGSRSLLTSRQLVEYIVLDIENVSTEVNVGGSKYILADAQVTRVSD 84
           T   C    ++      RSLLTSRQLVEY+VLDIENVSTEVNV GSKY+LA AQV RVSD
Sbjct: 290 TLRHCFLDADQYWRTSFRSLLTSRQLVEYVVLDIENVSTEVNVAGSKYMLAYAQVARVSD 349

Query: 85  FGRNDTIFFIRTHLGHILNPGDYALGYDLYGANSNNMELEKYKGLELPEAILIKKSYEEK 144
           FGRNDT+F I+THLGHILNPGDYALGYDLYGANSN+MELEKYKGLELPEAILIKKSYEEK
Sbjct: 350 FGRNDTMFSIKTHLGHILNPGDYALGYDLYGANSNDMELEKYKGLELPEAILIKKSYEEK 409

Query: 145 CQRKRGKPRSCLLKWMLMIKVEQRKI 171
            QRKRGKPRS  LK + M   ++ K+
Sbjct: 410 RQRKRGKPRSWKLKSLAMDVDDKSKV 435

[Close]
BLAST of Cla97C09G183730 vs. NCBI nr
Match: XP_022965515.1 (60S ribosomal export protein NMD3-like [Cucurbita maxima])

HSP 1 Score: 207.2 bits (526), Expect = 4.4e-50
Identity = 106/121 (87.60%), Postives = 111/121 (91.74%), Query Frame = 0 

Query: 42  RSLLTSRQLVEYIVLDIENVSTEVNVGGSKYILADAQVTRVSDFGRNDTIFFIRTHLGHI 101
           + LLTSRQLVEYIVLDIENVSTEVNV GSKYILADAQ+ RVSDFGRNDTIF IRTHLGHI
Sbjct: 307 KPLLTSRQLVEYIVLDIENVSTEVNVSGSKYILADAQIARVSDFGRNDTIFNIRTHLGHI 366

Query: 102 LNPGDYALGYDLYGANSNNMELEKYKGLELPEAILIKKSYEEKCQRKRGKPRSCLLKWML 161
           LNPGDYALGYDLY ANSN+MELEKYKGL+LPEAILIKKSYEEK QRKRGKPRS  LK + 
Sbjct: 367 LNPGDYALGYDLYRANSNDMELEKYKGLQLPEAILIKKSYEEKRQRKRGKPRSWKLKSLA 426

Query: 162 M 163
           M
Sbjct: 427 M 427

[Close]
BLAST of Cla97C09G183730 vs. NCBI nr
Match: XP_022938070.1 (60S ribosomal export protein NMD3-like [Cucurbita moschata])

HSP 1 Score: 206.5 bits (524), Expect = 7.4e-50
Identity = 106/121 (87.60%), Postives = 111/121 (91.74%), Query Frame = 0 

Query: 42  RSLLTSRQLVEYIVLDIENVSTEVNVGGSKYILADAQVTRVSDFGRNDTIFFIRTHLGHI 101
           + LLTSRQLVEYIVLDIENVSTEVNV GSKYILADAQ+ RVSDFGRNDTIF IRTHLGHI
Sbjct: 307 KPLLTSRQLVEYIVLDIENVSTEVNVSGSKYILADAQIARVSDFGRNDTIFNIRTHLGHI 366

Query: 102 LNPGDYALGYDLYGANSNNMELEKYKGLELPEAILIKKSYEEKCQRKRGKPRSCLLKWML 161
           LNPGDYALGYDLY ANSN+MELEKYKGL+LPEAILIKKSYEEK QRKRGKPRS  LK + 
Sbjct: 367 LNPGDYALGYDLYRANSNDMELEKYKGLQLPEAILIKKSYEEKRQRKRGKPRSWKLKSLE 426

Query: 162 M 163
           M
Sbjct: 427 M 427

[Close]
BLAST of Cla97C09G183730 vs. NCBI nr
Match: XP_022149109.1 (60S ribosomal export protein NMD3 [Momordica charantia] >XP_022149117.1 60S ribosomal export protein NMD3 [Momordica charantia] >XP_022149123.1 60S ribosomal export protein NMD3 [Momordica charantia])

HSP 1 Score: 206.1 bits (523), Expect = 9.7e-50
Identity = 105/134 (78.36%), Postives = 113/134 (84.33%), Query Frame = 0 

Query: 25  TQARCCCSRNKNQTDGSRSLLTSRQLVEYIVLDIENVSTEVNVGGSKYILADAQVTRVSD 84
           T   C    ++      RSLLTSRQLVEYI+LDIENVS EVNVGGSKY+LADAQV RVSD
Sbjct: 290 TLRHCFLDADQYWRTSFRSLLTSRQLVEYIILDIENVSAEVNVGGSKYVLADAQVARVSD 349

Query: 85  FGRNDTIFFIRTHLGHILNPGDYALGYDLYGANSNNMELEKYKGLELPEAILIKKSYEEK 144
           FGRNDTIF IRTHLGHILNPGDYALGYDLY ANSN+MEL+KYKGL LPEAIL+KKSYEEK
Sbjct: 350 FGRNDTIFSIRTHLGHILNPGDYALGYDLYAANSNDMELDKYKGLVLPEAILVKKSYEEK 409

Query: 145 CQRKRGKPRSCLLK 159
            QRKRGKPR+  LK
Sbjct: 410 RQRKRGKPRAWKLK 423

[Close]
BLAST of Cla97C09G183730 vs. NCBI nr
Match: XP_004143504.1 (PREDICTED: 60S ribosomal export protein NMD3 [Cucumis sativus] >KGN48818.1 hypothetical protein Csa_6G502070 [Cucumis sativus])

HSP 1 Score: 205.7 bits (522), Expect = 1.3e-49
Identity = 108/146 (73.97%), Postives = 119/146 (81.51%), Query Frame = 0 

Query: 25  TQARCCCSRNKNQTDGSRSLLTSRQLVEYIVLDIENVSTEVNVGGSKYILADAQVTRVSD 84
           T   C    ++      RSLLTSRQLVEY+VLDIENVSTEVNV GSKY+LA AQV RVSD
Sbjct: 290 TLRHCFLDADQYWRTSFRSLLTSRQLVEYVVLDIENVSTEVNVAGSKYMLAYAQVARVSD 349

Query: 85  FGRNDTIFFIRTHLGHILNPGDYALGYDLYGANSNNMELEKYKGLELPEAILIKKSYEEK 144
           FGRNDT+F I+THLGHILNPGDYALGYDLYGANSN+MELEKYKGLELPEAILIKKSYEEK
Sbjct: 350 FGRNDTMFSIKTHLGHILNPGDYALGYDLYGANSNDMELEKYKGLELPEAILIKKSYEEK 409

Query: 145 CQRKRGKPRSCLLKWMLMIKVEQRKI 171
            QRK GKPRS  LK + M   ++ K+
Sbjct: 410 RQRKHGKPRSWKLKSLSMDVDDKTKV 435

[Close]
BLAST of Cla97C09G183730 vs. TrEMBL
Match: tr|A0A1S3B197|A0A1S3B197_CUCME (60S ribosomal export protein NMD3 OS=Cucumis melo OX=3656 GN=LOC103485035 PE=3 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 1.7e-50
Identity = 109/146 (74.66%), Postives = 120/146 (82.19%), Query Frame = 0 

Query: 25  TQARCCCSRNKNQTDGSRSLLTSRQLVEYIVLDIENVSTEVNVGGSKYILADAQVTRVSD 84
           T   C    ++      RSLLTSRQLVEY+VLDIENVSTEVNV GSKY+LA AQV RVSD
Sbjct: 290 TLRHCFLDADQYWRTSFRSLLTSRQLVEYVVLDIENVSTEVNVAGSKYMLAYAQVARVSD 349

Query: 85  FGRNDTIFFIRTHLGHILNPGDYALGYDLYGANSNNMELEKYKGLELPEAILIKKSYEEK 144
           FGRNDT+F I+THLGHILNPGDYALGYDLYGANSN+MELEKYKGLELPEAILIKKSYEEK
Sbjct: 350 FGRNDTMFSIKTHLGHILNPGDYALGYDLYGANSNDMELEKYKGLELPEAILIKKSYEEK 409

Query: 145 CQRKRGKPRSCLLKWMLMIKVEQRKI 171
            QRKRGKPRS  LK + M   ++ K+
Sbjct: 410 RQRKRGKPRSWKLKSLAMDVDDKSKV 435

[Close]
BLAST of Cla97C09G183730 vs. TrEMBL
Match: tr|A0A0A0KGY6|A0A0A0KGY6_CUCSA (60S ribosomal export protein NMD3 OS=Cucumis sativus OX=3659 GN=Csa_6G502070 PE=3 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 8.4e-50
Identity = 108/146 (73.97%), Postives = 119/146 (81.51%), Query Frame = 0 

Query: 25  TQARCCCSRNKNQTDGSRSLLTSRQLVEYIVLDIENVSTEVNVGGSKYILADAQVTRVSD 84
           T   C    ++      RSLLTSRQLVEY+VLDIENVSTEVNV GSKY+LA AQV RVSD
Sbjct: 290 TLRHCFLDADQYWRTSFRSLLTSRQLVEYVVLDIENVSTEVNVAGSKYMLAYAQVARVSD 349

Query: 85  FGRNDTIFFIRTHLGHILNPGDYALGYDLYGANSNNMELEKYKGLELPEAILIKKSYEEK 144
           FGRNDT+F I+THLGHILNPGDYALGYDLYGANSN+MELEKYKGLELPEAILIKKSYEEK
Sbjct: 350 FGRNDTMFSIKTHLGHILNPGDYALGYDLYGANSNDMELEKYKGLELPEAILIKKSYEEK 409

Query: 145 CQRKRGKPRSCLLKWMLMIKVEQRKI 171
            QRK GKPRS  LK + M   ++ K+
Sbjct: 410 RQRKHGKPRSWKLKSLSMDVDDKTKV 435

[Close]
BLAST of Cla97C09G183730 vs. TrEMBL
Match: tr|A0A2P4I0P4|A0A2P4I0P4_QUESU (60S ribosomal export protein NMD3 OS=Quercus suber OX=58331 GN=CFP56_29331 PE=3 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 3.0e-47
Identity = 95/117 (81.20%), Postives = 110/117 (94.02%), Query Frame = 0 

Query: 42  RSLLTSRQLVEYIVLDIENVSTEVNVGGSKYILADAQVTRVSDFGRNDTIFFIRTHLGHI 101
           +SLLTSRQLVEYIVLD+E +S+EVNVGGSKY+LADAQV RVSDFG+NDTIF IRTHLGH+
Sbjct: 350 KSLLTSRQLVEYIVLDVEKISSEVNVGGSKYVLADAQVARVSDFGKNDTIFNIRTHLGHL 409

Query: 102 LNPGDYALGYDLYGANSNNMELEKYKGLELPEAILIKKSYEEKCQRKRGKPRSCLLK 159
           LNPGDYALGYDLYGANSN++E+EK+KGL +PEAILI+KSYEEK Q+KRGKPR+  LK
Sbjct: 410 LNPGDYALGYDLYGANSNDIEIEKHKGLVIPEAILIRKSYEEKRQKKRGKPRAWKLK 466

[Close]
BLAST of Cla97C09G183730 vs. TrEMBL
Match: tr|A0A2H5NUK7|A0A2H5NUK7_CITUN (60S ribosomal export protein NMD3 OS=Citrus unshiu OX=55188 GN=CUMW_077410 PE=3 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 5.1e-47
Identity = 100/134 (74.63%), Postives = 111/134 (82.84%), Query Frame = 0 

Query: 25  TQARCCCSRNKNQTDGSRSLLTSRQLVEYIVLDIENVSTEVNVGGSKYILADAQVTRVSD 84
           T   C    ++      +SLLTSRQLVEYIVLD+E VS+EVNVGGSKY+LADAQV RVSD
Sbjct: 290 TLRHCFLDADQYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGSKYVLADAQVARVSD 349

Query: 85  FGRNDTIFFIRTHLGHILNPGDYALGYDLYGANSNNMELEKYKGLELPEAILIKKSYEEK 144
           FG+NDTIF IRTHLGH+LNPGDYALGYDLY AN+N+MEL+KYKGL LPE ILIKKSYEEK
Sbjct: 350 FGKNDTIFSIRTHLGHLLNPGDYALGYDLYSANNNDMELDKYKGLVLPETILIKKSYEEK 409

Query: 145 CQRKRGKPRSCLLK 159
             RKRGKPRS  LK
Sbjct: 410 RLRKRGKPRSWKLK 423

[Close]
BLAST of Cla97C09G183730 vs. TrEMBL
Match: tr|A0A2I4F2M4|A0A2I4F2M4_9ROSI (60S ribosomal export protein NMD3 OS=Juglans regia OX=51240 GN=LOC108994921 PE=3 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 1.9e-46
Identity = 101/128 (78.91%), Postives = 114/128 (89.06%), Query Frame = 0 

Query: 42  RSLLTSRQLVEYIVLDIENVSTEVNVGGSKYILADAQVTRVSDFGRNDTIFFIRTHLGHI 101
           +SL TSRQLVEYIVLD+E VS+EVNVGGSKY LAD+QV RVSDFG+NDTIF IRTHLGH+
Sbjct: 307 KSLSTSRQLVEYIVLDVEIVSSEVNVGGSKYFLADSQVARVSDFGKNDTIFSIRTHLGHL 366

Query: 102 LNPGDYALGYDLYGANSNNMELEKYKGLELPEAILIKKSYEEKCQRKRGKPRSCLLKWML 161
           LNPGDYALGYDLYGANSN+ ELEK+KGL LPEAILIKKSYEEK Q+KRGKPR+  LK  L
Sbjct: 367 LNPGDYALGYDLYGANSNDGELEKHKGLILPEAILIKKSYEEKRQKKRGKPRAWKLK-SL 426

Query: 162 MIKVEQRK 170
            ++V+ RK
Sbjct: 427 DMEVDDRK 433

[Close]
BLAST of Cla97C09G183730 vs. Swiss-Prot
Match: sp|G0S488|NMD3_CHATD (60S ribosomal export protein NMD3 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=NMD3 PE=3 SV=2)

HSP 1 Score: 88.2 bits (217), Expect = 9.7e-17
Identity = 50/122 (40.98%), Postives = 74/122 (60.66%), Query Frame = 0 

Query: 42  RSLLTSRQLVEYIVLDIENVSTEVNVGGSKYILADAQVTRVSDFGRNDTIFFIRTHLGHI 101
           R L  +  +VE+IV+DIE  +T +  G  K++LA+  V R SD G ND ++F RTHLGH+
Sbjct: 313 RPLADATSMVEFIVMDIE--ATGIRKG--KWVLAEVTVARASDLGVNDNVYFTRTHLGHL 372

Query: 102 LNPGDYALGYDLYGANSNN-----MELEKYKGLELPEAILIKKSYEEKCQRKRGKPRSCL 159
           L+PGD  +GY L G N N+     +E  +  G  +P+ +L+KK Y     R+R + R+  
Sbjct: 373 LHPGDSVMGYMLTGTNFNSDTFDAIENSRQYGSTIPDVVLVKKHYP---NRRRNRRRNWK 427

[Close]
BLAST of Cla97C09G183730 vs. Swiss-Prot
Match: sp|Q55BF2|NMD3_DICDI (60S ribosomal export protein NMD3 OS=Dictyostelium discoideum OX=44689 GN=nmd3 PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.6e-16
Identity = 49/107 (45.79%), Postives = 71/107 (66.36%), Query Frame = 0 

Query: 42  RSLLTSRQLVEYIVLDIENVSTEVNVGGS---KYILADAQVTRVSDFGRNDTIFFIRTHL 101
           R+L + +QLVE+ VLD       VN+ G+   +Y L+D Q+ R +DFG ND I+ IR+HL
Sbjct: 301 RALSSYKQLVEFTVLD-------VNLTGATRGRYALSDIQLMRSADFGANDNIYDIRSHL 360

Query: 102 GHILNPGDYALGYDLYGANSNNMELE-KYKGLELPEAILIKKSYEEK 145
           G+ILNPGD ALGYD+  +N  + +L    K  +LP+ +L+KK+Y  K
Sbjct: 361 GNILNPGDLALGYDVASSNFPDSDLAGMKKNQQLPDFVLVKKTYPSK 400

[Close]
BLAST of Cla97C09G183730 vs. Swiss-Prot
Match: sp|Q08DS5|NMD3_BOVIN (60S ribosomal export protein NMD3 OS=Bos taurus OX=9913 GN=NMD3 PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.3e-13
Identity = 41/112 (36.61%), Postives = 65/112 (58.04%), Query Frame = 0 

Query: 43  SLLTSRQLVEYIVLD---IENVSTEVNVG--GSKYILADAQVTRVSDFGRNDTIFFIRTH 102
           SL   +QL E+IV++   ++++      G    K+ L +  V + S+    D  +F RTH
Sbjct: 306 SLCHPKQLEEFIVMECSIVQDIKRSAGAGMISKKHTLGEVWVQKTSEM-NTDKQYFCRTH 365

Query: 103 LGHILNPGDYALGYDLYGANSNNMELEKYKGLELPEAILIKKSYEEKCQRKR 150
           LGH+LNPGD  LG+DL   N N+  + K K   +P+ +LIKKSY+   +++R
Sbjct: 366 LGHLLNPGDLVLGFDLVNCNLNDEHVNKMKSDRVPDVVLIKKSYDRTRRQRR 416

[Close]
BLAST of Cla97C09G183730 vs. Swiss-Prot
Match: sp|Q6P2Z6|NMD3_XENTR (60S ribosomal export protein NMD3 OS=Xenopus tropicalis OX=8364 GN=nmd3 PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.7e-13
Identity = 45/113 (39.82%), Postives = 64/113 (56.64%), Query Frame = 0 

Query: 43  SLLTSRQLVEYIVLDIENVSTEVNVGG-----SKYILADAQVTRVSDFGRNDTIFFIRTH 102
           SL   +QL E+IV+D + V       G     +K+ILA+  V + S+       +  RTH
Sbjct: 306 SLFHPKQLEEFIVMDTDIVRDRKQAAGAGMRSNKHILAEVWVQKTSEMNTTQQ-YHCRTH 365

Query: 103 LGHILNPGDYALGYDLYGANSNNMELEKYKGLELPEAILIKKSYEE-KCQRKR 150
           LGH+LNPGD  LG+DL   N N+  + K     +P+ +LIKKSY+  K QR+R
Sbjct: 366 LGHLLNPGDLVLGFDLANCNLNDEFINKMNPHHIPDVVLIKKSYDRTKRQRRR 417

[Close]
BLAST of Cla97C09G183730 vs. Swiss-Prot
Match: sp|Q6GNS3|NMD3_XENLA (60S ribosomal export protein NMD3 OS=Xenopus laevis OX=8355 GN=nmd3 PE=2 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.8e-13
Identity = 40/112 (35.71%), Postives = 63/112 (56.25%), Query Frame = 0 

Query: 43  SLLTSRQLVEYIVLDIENVSTEVNVGG-----SKYILADAQVTRVSDFGRNDTIFFIRTH 102
           SL   +Q+ E+IV+D E +       G     +K++LA+  V + S+       +  RTH
Sbjct: 306 SLFHPKQMEEFIVMDTEIIRDRKQAAGAGMRSNKHVLAEVWVQKTSEMNTTQQ-YHCRTH 365

Query: 103 LGHILNPGDYALGYDLYGANSNNMELEKYKGLELPEAILIKKSYEEKCQRKR 150
           LGH+LNPGD  LG+DL   N N+  + K     +P+ +LIKKSY+   +++R
Sbjct: 366 LGHLLNPGDLVLGFDLSNCNLNDEFINKMNPHHIPDVVLIKKSYDRARRQRR 416

[Close]
BLAST of Cla97C09G183730 vs. TAIR10
Match: AT2G03820.1 (nonsense-mediated mRNA decay NMD3 family protein)

HSP 1 Score: 127.9 bits (320), Expect = 6.1e-30
Identity = 70/126 (55.56%), Postives = 88/126 (69.84%), Query Frame = 0 

Query: 40  GSRSLLTSRQLVEYIVLDIENVSTEVNVGGSKYILADAQVTRVSDFGRNDTIFFIRTHLG 99
           G RS LTSRQLV+Y V D+E    E  VGG KY L+  Q+ R SD G+   +F+++THLG
Sbjct: 307 GFRSALTSRQLVKYFVFDVEPPVGEATVGGQKYALSYVQIARESDIGK---MFYVQTHLG 366

Query: 100 HILNPGDYALGYDLYGANSNNMELEKYK---GLELPEAILIKKSYEEKCQRKRGKPRSCL 159
           HIL PGD ALGYD+YGAN N+ E+EKY+      LPEAILIKK YEE+ +RK+ K R+  
Sbjct: 367 HILKPGDQALGYDIYGANVNDNEMEKYRLSVKNGLPEAILIKKCYEEQRERKQKKSRNWK 426

Query: 160 LKWMLM 163
           LK + M
Sbjct: 427 LKSLPM 429

The following BLAST results are available for this feature:
BLAST of Cla97C09G183730 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008440695.12.6e-5074.66PREDICTED: 60S ribosomal export protein NMD3 [Cucumis melo][more]
XP_022965515.14.4e-5087.6060S ribosomal export protein NMD3-like [Cucurbita maxima][more]
XP_022938070.17.4e-5087.6060S ribosomal export protein NMD3-like [Cucurbita moschata][more]
XP_022149109.19.7e-5078.3660S ribosomal export protein NMD3 [Momordica charantia] >XP_022149117.1 60S ribo... [more]
XP_004143504.11.3e-4973.97PREDICTED: 60S ribosomal export protein NMD3 [Cucumis sativus] >KGN48818.1 hypot... [more]
BLAST of Cla97C09G183730 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3B197|A0A1S3B197_CUCME1.7e-5074.6660S ribosomal export protein NMD3 OS=Cucumis melo OX=3656 GN=LOC103485035 PE=3 S... [more]
tr|A0A0A0KGY6|A0A0A0KGY6_CUCSA8.4e-5073.9760S ribosomal export protein NMD3 OS=Cucumis sativus OX=3659 GN=Csa_6G502070 PE=... [more]
tr|A0A2P4I0P4|A0A2P4I0P4_QUESU3.0e-4781.2060S ribosomal export protein NMD3 OS=Quercus suber OX=58331 GN=CFP56_29331 PE=3 ... [more]
tr|A0A2H5NUK7|A0A2H5NUK7_CITUN5.1e-4774.6360S ribosomal export protein NMD3 OS=Citrus unshiu OX=55188 GN=CUMW_077410 PE=3 ... [more]
tr|A0A2I4F2M4|A0A2I4F2M4_9ROSI1.9e-4678.9160S ribosomal export protein NMD3 OS=Juglans regia OX=51240 GN=LOC108994921 PE=3... [more]
BLAST of Cla97C09G183730 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|G0S488|NMD3_CHATD9.7e-1740.9860S ribosomal export protein NMD3 OS=Chaetomium thermophilum (strain DSM 1495 / ... [more]
sp|Q55BF2|NMD3_DICDI1.6e-1645.7960S ribosomal export protein NMD3 OS=Dictyostelium discoideum OX=44689 GN=nmd3 P... [more]
sp|Q08DS5|NMD3_BOVIN1.3e-1336.6160S ribosomal export protein NMD3 OS=Bos taurus OX=9913 GN=NMD3 PE=2 SV=1[more]
sp|Q6P2Z6|NMD3_XENTR1.7e-1339.8260S ribosomal export protein NMD3 OS=Xenopus tropicalis OX=8364 GN=nmd3 PE=2 SV=... [more]
sp|Q6GNS3|NMD3_XENLA3.8e-1335.7160S ribosomal export protein NMD3 OS=Xenopus laevis OX=8355 GN=nmd3 PE=2 SV=1[more]
BLAST of Cla97C09G183730 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G03820.16.1e-3055.56nonsense-mediated mRNA decay NMD3 family protein[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015031 protein transport
biological_process GO:0008150 biological_process
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C09G183730.1Cla97C09G183730.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR12746NONSENSE-MEDIATED MRNA DECAY PROTEIN 3coord: 28..163

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C09G183730ClCG09G022280Watermelon (Charleston Gray)wcgwmbB035
Cla97C09G183730Lsi11G016500Bottle gourd (USVL1VR-Ls)lsiwmbB109
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C09G183730Silver-seed gourdcarwmbB0417
Cla97C09G183730Silver-seed gourdcarwmbB0559
Cla97C09G183730Cucumber (Gy14) v2cgybwmbB482
Cla97C09G183730Cucumber (Gy14) v1cgywmbB337
Cla97C09G183730Cucurbita maxima (Rimu)cmawmbB150
Cla97C09G183730Cucurbita maxima (Rimu)cmawmbB547
Cla97C09G183730Cucurbita moschata (Rifu)cmowmbB131
Cla97C09G183730Cucurbita moschata (Rifu)cmowmbB528
Cla97C09G183730Wild cucumber (PI 183967)cpiwmbB532
Cla97C09G183730Cucumber (Chinese Long) v3cucwmbB525
Cla97C09G183730Cucumber (Chinese Long) v2cuwmbB506
Cla97C09G183730Melon (DHL92) v3.6.1medwmbB401
Cla97C09G183730Melon (DHL92) v3.5.1mewmbB413
Cla97C09G183730Watermelon (97103) v1wmwmbB042
Cla97C09G183730Wax gourdwgowmbB271