Cla97C09G177790 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C09G177790
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Hydroxyproline-rich glycoprotein family protein
Location	Cla97Chr09 : 29327760 .. 29328350 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACTCTTCGCTTCTCAACCGTTGTCTTTCCTTTGTTATTTGGTGCTTTTATGTTGATGAACTTTGATGTTTTGATCGTGACAGTGAGTGCAAGACACCTCTTAGAGACACCATTACCTAAGGTCCCTGAAGAGCTTCCAAAACCAGAAATACCCACTTTCCCAAAGCCCGAGCTTCCTCCATTCCCAAAAGTTGAGTTACCTCCATTGCCTCACCTTCCACCCTTGGAAAAGCCTAAAGTGCTTGAATTGCCAAAGCCTGAACTCCCAAAGCTGCCTGAATTACCAAAAGTACCTAAGCTTGATCTCTCCAAATTTCCTGAAGTTCCAAGCTTGCCTAAGTTTGATCTTCCCAAACTGTCTGAAGTTTCAGATTTACCAAAACCTGAGCTCCCAAAATTGCCTGAATTACCAAATGTGCCAAAACTTGAGGTTCCCCAATTACCAGAAATACCAAATGTGCCTAAACCAGAACTCCCTAAATTACCTGAGTTGTCACCCCTCCCAAAGCCCGTTCTCCCTACCCTTCCAAAGGACATGCCTTTCCCTTCATTTAACCCATCCCACAAAACCACAACAAACCCTTGA

mRNA sequence

ATGGCTACTCTTCGCTTCTCAACCGTTGTCTTTCCTTTGTTATTTGGTGCTTTTATGTTGATGAACTTTGATGTTTTGATCGTGACAGTGAGTGCAAGACACCTCTTAGAGACACCATTACCTAAGGTCCCTGAAGAGCTTCCAAAACCAGAAATACCCACTTTCCCAAAGCCCGAGCTTCCTCCATTCCCAAAAGTTGAGTTACCTCCATTGCCTCACCTTCCACCCTTGGAAAAGCCTAAAGTGCTTGAATTGCCAAAGCCTGAACTCCCAAAGCTGCCTGAATTACCAAAAGTACCTAAGCTTGATCTCTCCAAATTTCCTGAAGTTCCAAGCTTGCCTAAGTTTGATCTTCCCAAACTGTCTGAAGTTTCAGATTTACCAAAACCTGAGCTCCCAAAATTGCCTGAATTACCAAATGTGCCAAAACTTGAGGTTCCCCAATTACCAGAAATACCAAATGTGCCTAAACCAGAACTCCCTAAATTACCTGAGTTGTCACCCCTCCCAAAGCCCGTTCTCCCTACCCTTCCAAAGGACATGCCTTTCCCTTCATTTAACCCATCCCACAAAACCACAACAAACCCTTGA

Coding sequence (CDS)

ATGGCTACTCTTCGCTTCTCAACCGTTGTCTTTCCTTTGTTATTTGGTGCTTTTATGTTGATGAACTTTGATGTTTTGATCGTGACAGTGAGTGCAAGACACCTCTTAGAGACACCATTACCTAAGGTCCCTGAAGAGCTTCCAAAACCAGAAATACCCACTTTCCCAAAGCCCGAGCTTCCTCCATTCCCAAAAGTTGAGTTACCTCCATTGCCTCACCTTCCACCCTTGGAAAAGCCTAAAGTGCTTGAATTGCCAAAGCCTGAACTCCCAAAGCTGCCTGAATTACCAAAAGTACCTAAGCTTGATCTCTCCAAATTTCCTGAAGTTCCAAGCTTGCCTAAGTTTGATCTTCCCAAACTGTCTGAAGTTTCAGATTTACCAAAACCTGAGCTCCCAAAATTGCCTGAATTACCAAATGTGCCAAAACTTGAGGTTCCCCAATTACCAGAAATACCAAATGTGCCTAAACCAGAACTCCCTAAATTACCTGAGTTGTCACCCCTCCCAAAGCCCGTTCTCCCTACCCTTCCAAAGGACATGCCTTTCCCTTCATTTAACCCATCCCACAAAACCACAACAAACCCTTGA

Protein sequence

MATLRFSTVVFPLLFGAFMLMNFDVLIVTVSARHLLETPLPKVPEELPKPEIPTFPKPELPPFPKVELPPLPHLPPLEKPKVLELPKPELPKLPELPKVPKLDLSKFPEVPSLPKFDLPKLSEVSDLPKPELPKLPELPNVPKLEVPQLPEIPNVPKPELPKLPELSPLPKPVLPTLPKDMPFPSFNPSHKTTTNP

Homology

[Close]

BLAST of Cla97C09G177790 vs. NCBI nr
Match: XP_022927803.1 (protein PELPK1-like [Cucurbita moschata])

HSP 1 Score: 82.0 bits (201), Expect = 2.4e-12
Identity = 42/53 (79.25%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 1  MATLRFSTVVFPLLFGAFMLMNFDVLIVTVSARHLLETPLPKVPEELPKPEIP 54
          MAT RFST VFPL+  AFMLMNFD  ++TVSARHLLE+PLPKVPEELPKPE+P
Sbjct: 1  MAT-RFSTFVFPLILSAFMLMNFDFFVMTVSARHLLESPLPKVPEELPKPEVP 52

[Close]

BLAST of Cla97C09G177790 vs. NCBI nr
Match: XP_023531695.1 (protein PELPK1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 77.4 bits (189), Expect = 6.0e-11
Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 1  MATLRFSTVVFPLLFGAFMLMNFDVLIVTVSARHLLETPLPKVPEELPKPEIPT 55
          MAT RFST VFPL+   FMLM FD  ++TVSARHLLETP+PKVPEELP PEIP+
Sbjct: 1  MAT-RFSTFVFPLILSVFMLMRFDCFVMTVSARHLLETPVPKVPEELPAPEIPS 53

[Close]

BLAST of Cla97C09G177790 vs. NCBI nr
Match: XP_022927799.1 (protein PELPK1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 74.3 bits (181), Expect = 5.1e-10
Identity = 39/53 (73.58%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 1  MATLRFSTVVFPLLFGAFMLMNFDVLIVTVSARHLLETPLPKVPEELPKPEIP 54
          MAT RFST VFPL+    MLM+FD  ++ VSARHLLE+PLPKVPEELPKPEIP
Sbjct: 1  MAT-RFSTFVFPLILSVSMLMSFDCFVIMVSARHLLESPLPKVPEELPKPEIP 52

[Close]

BLAST of Cla97C09G177790 vs. NCBI nr
Match: XP_022927798.1 (protein PELPK1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 74.3 bits (181), Expect = 5.1e-10
Identity = 39/53 (73.58%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 1  MATLRFSTVVFPLLFGAFMLMNFDVLIVTVSARHLLETPLPKVPEELPKPEIP 54
          MAT RFST VFPL+    MLM+FD  ++ VSARHLLE+PLPKVPEELPKPEIP
Sbjct: 1  MAT-RFSTFVFPLILSVSMLMSFDCFVIMVSARHLLESPLPKVPEELPKPEIP 52

[Close]

BLAST of Cla97C09G177790 vs. NCBI nr
Match: XP_008455139.1 (PREDICTED: periaxin-like [Cucumis melo])

HSP 1 Score: 73.6 bits (179), Expect = 8.6e-10
Identity = 38/53 (71.70%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 1  MATLRFSTVVFPLLFGAFMLMNFDVLIVTVSARHLLETPLPKVPEELPKPEIP 54
          MAT R ST+  PL+ G  M+M+FD LI++VSARHLLETPLP VPEELPKPEIP
Sbjct: 1  MATHRLSTLKAPLILGILMMMSFDFLIMSVSARHLLETPLPHVPEELPKPEIP 53

[Close]

BLAST of Cla97C09G177790 vs. TrEMBL
Match: tr|A0A1S3C0Y7|A0A1S3C0Y7_CUCME (periaxin-like OS=Cucumis melo OX=3656 GN=LOC103495382 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 5.7e-10
Identity = 38/53 (71.70%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 1  MATLRFSTVVFPLLFGAFMLMNFDVLIVTVSARHLLETPLPKVPEELPKPEIP 54
          MAT R ST+  PL+ G  M+M+FD LI++VSARHLLETPLP VPEELPKPEIP
Sbjct: 1  MATHRLSTLKAPLILGILMMMSFDFLIMSVSARHLLETPLPHVPEELPKPEIP 53

[Close]

BLAST of Cla97C09G177790 vs. TrEMBL
Match: tr|A0A1S3C194|A0A1S3C194_CUCME (IgA FC receptor-like OS=Cucumis melo OX=3656 GN=LOC103495680 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.1e-08
Identity = 37/53 (69.81%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 1  MATLRFSTVVFPLLFGAFMLMNFDVLIVTVSARHLLETPLPKVPEELPKPEIP 54
          MATLRFST+VFP++   FMLMNFD+ I+TV+AR+LLET L   PE LPKPEIP
Sbjct: 1  MATLRFSTLVFPVILSVFMLMNFDLSIMTVNARYLLETSL---PEGLPKPEIP 50

[Close]

BLAST of Cla97C09G177790 vs. TrEMBL
Match: tr|A0A1S3C077|A0A1S3C077_CUCME (periaxin-like OS=Cucumis melo OX=3656 GN=LOC103495381 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 4.1e-08
Identity = 37/55 (67.27%), Postives = 43/55 (78.18%), Query Frame = 0


Query: 1  MATLRFSTVVFPLLFGAFM-LMNFDVLIVTVSARHLLETPLPKVPEELPKPEIPT 55
          M+T R+ST    L+FG  M +M+FD  I+T SARHLLETPLPKVPEELPK EIPT
Sbjct: 1  MSTHRYSTFASHLIFGVLMIMMSFDFFIMTASARHLLETPLPKVPEELPKLEIPT 55

The following BLAST results are available for this feature:

BLAST of Cla97C09G177790 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022927803.1	2.4e-12	79.25	protein PELPK1-like [Cucurbita moschata]	[more]
XP_023531695.1	6.0e-11	74.07	protein PELPK1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022927799.1	5.1e-10	73.58	protein PELPK1-like isoform X2 [Cucurbita moschata]	[more]
XP_022927798.1	5.1e-10	73.58	protein PELPK1-like isoform X1 [Cucurbita moschata]	[more]
XP_008455139.1	8.6e-10	71.70	PREDICTED: periaxin-like [Cucumis melo]	[more]

BLAST of Cla97C09G177790 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C0Y7\|A0A1S3C0Y7_CUCME	5.7e-10	71.70	periaxin-like OS=Cucumis melo OX=3656 GN=LOC103495382 PE=4 SV=1	[more]
tr\|A0A1S3C194\|A0A1S3C194_CUCME	3.1e-08	69.81	IgA FC receptor-like OS=Cucumis melo OX=3656 GN=LOC103495680 PE=4 SV=1	[more]
tr\|A0A1S3C077\|A0A1S3C077_CUCME	4.1e-08	67.27	periaxin-like OS=Cucumis melo OX=3656 GN=LOC103495381 PE=4 SV=1	[more]

BLAST of Cla97C09G177790 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C09G177790 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C09G177790.1	Cla97C09G177790.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..196
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..182
None	No IPR available	PANTHER	PTHR33088	FAMILY NOT NAMED	coord: 13..115 coord: 108..187

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C09G177790	CmaCh11G016610	Cucurbita maxima (Rimu)	cmawmbB149
Cla97C09G177790	MELO3C018599.2	Melon (DHL92) v3.6.1	medwmbB198

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C09G177790	Watermelon (97103) v2	wmbwmbB060
Cla97C09G177790	Silver-seed gourd	carwmbB0297
Cla97C09G177790	Silver-seed gourd	carwmbB0402
Cla97C09G177790	Cucumber (Gy14) v2	cgybwmbB530
Cla97C09G177790	Cucumber (Gy14) v1	cgywmbB399
Cla97C09G177790	Cucurbita maxima (Rimu)	cmawmbB550
Cla97C09G177790	Cucurbita moschata (Rifu)	cmowmbB136
Cla97C09G177790	Cucurbita moschata (Rifu)	cmowmbB531
Cla97C09G177790	Cucurbita moschata (Rifu)	cmowmbB771
Cla97C09G177790	Wild cucumber (PI 183967)	cpiwmbB584
Cla97C09G177790	Wild cucumber (PI 183967)	cpiwmbB601
Cla97C09G177790	Cucumber (Chinese Long) v3	cucwmbB581
Cla97C09G177790	Cucumber (Chinese Long) v2	cuwmbB558
Cla97C09G177790	Bottle gourd (USVL1VR-Ls)	lsiwmbB251
Cla97C09G177790	Melon (DHL92) v3.6.1	medwmbB209
Cla97C09G177790	Melon (DHL92) v3.6.1	medwmbB554
Cla97C09G177790	Melon (DHL92) v3.5.1	mewmbB218
Cla97C09G177790	Melon (DHL92) v3.5.1	mewmbB224
Cla97C09G177790	Melon (DHL92) v3.5.1	mewmbB560
Cla97C09G177790	Watermelon (Charleston Gray)	wcgwmbB035
Cla97C09G177790	Watermelon (Charleston Gray)	wcgwmbB055
Cla97C09G177790	Watermelon (97103) v1	wmwmbB043
Cla97C09G177790	Wax gourd	wgowmbB049
Cla97C09G177790	Wax gourd	wgowmbB263