Cla97C09G173190 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C09G173190
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	11S seed storage protein
Location	Cla97Chr09 : 9826108 .. 9826293 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTGGTTCTCCATTATTAGCACGCCGAATCCTGTTTTTACTCATTTGGCTGGTAGCATCGGCGTTTGGAAGTCTCTTTCATCAGAAGTTATTCAAGCAACCTTTAATGTGGATGGTGATTTGGGGAAGAACTTCTCATCCAAAAGAGGTTCTGATGCCATCTTCTTCCCTCCTTCTAATTAG

mRNA sequence

ATGGAGTGGTTCTCCATTATTAGCACGCCGAATCCTGTTTTTACTCATTTGGCTGGTAGCATCGGCGTTTGGAAGTCTCTTTCATCAGAAGTTATTCAAGCAACCTTTAATGTGGATGGTGATTTGGGGAAGAACTTCTCATCCAAAAGAGGTTCTGATGCCATCTTCTTCCCTCCTTCTAATTAG

Coding sequence (CDS)

ATGGAGTGGTTCTCCATTATTAGCACGCCGAATCCTGTTTTTACTCATTTGGCTGGTAGCATCGGCGTTTGGAAGTCTCTTTCATCAGAAGTTATTCAAGCAACCTTTAATGTGGATGGTGATTTGGGGAAGAACTTCTCATCCAAAAGAGGTTCTGATGCCATCTTCTTCCCTCCTTCTAATTAG

Protein sequence

MEWFSIISTPNPVFTHLAGSIGVWKSLSSEVIQATFNVDGDLGKNFSSKRGSDAIFFPPSN

Homology

[Close]

BLAST of Cla97C09G173190 vs. NCBI nr
Match: XP_022976927.1 (glutelin type-D 1-like [Cucurbita maxima])

HSP 1 Score: 115.2 bits (287), Expect = 8.0e-23
Identity = 55/60 (91.67%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 1   MEWFSIISTPNPVFTHLAGSIGVWKSLSSEVIQATFNVDGDLGKNFSSKRGSDAIFFPPS 60
           MEWFSIISTPNPVFTHLAGSIGVWKSLS EVIQA FNVD DL KNFSSKR SDAIFFPPS
Sbjct: 296 MEWFSIISTPNPVFTHLAGSIGVWKSLSPEVIQAAFNVDADLVKNFSSKRASDAIFFPPS 355

[Close]

BLAST of Cla97C09G173190 vs. NCBI nr
Match: XP_023535755.1 (glutelin type-D 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 115.2 bits (287), Expect = 8.0e-23
Identity = 55/60 (91.67%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 1   MEWFSIISTPNPVFTHLAGSIGVWKSLSSEVIQATFNVDGDLGKNFSSKRGSDAIFFPPS 60
           MEWFSIISTPNPVFTHLAGSIGVWKSLS EVIQA FNVD DL KNFSSKR SDAIFFPPS
Sbjct: 296 MEWFSIISTPNPVFTHLAGSIGVWKSLSPEVIQAAFNVDADLVKNFSSKRASDAIFFPPS 355

[Close]

BLAST of Cla97C09G173190 vs. NCBI nr
Match: XP_008461502.1 (PREDICTED: glutelin type-B 5-like [Cucumis melo])

HSP 1 Score: 114.4 bits (285), Expect = 1.4e-22
Identity = 54/61 (88.52%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1   MEWFSIISTPNPVFTHLAGSIGVWKSLSSEVIQATFNVDGDLGKNFSSKRGSDAIFFPPS 60
           MEWFSIISTPNPVFTHLAGSIGVWK+LS EVIQA FNV+ DL KNFSSKR SDAIFFPPS
Sbjct: 296 MEWFSIISTPNPVFTHLAGSIGVWKALSPEVIQAAFNVEADLVKNFSSKRSSDAIFFPPS 355

Query: 61  N 62
           N
Sbjct: 356 N 356

[Close]

BLAST of Cla97C09G173190 vs. NCBI nr
Match: XP_022932542.1 (glutelin type-D 1-like [Cucurbita moschata])

HSP 1 Score: 114.0 bits (284), Expect = 1.8e-22
Identity = 54/60 (90.00%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 1   MEWFSIISTPNPVFTHLAGSIGVWKSLSSEVIQATFNVDGDLGKNFSSKRGSDAIFFPPS 60
           MEWFSII+TPNPVFTHLAGSIGVWKSLS EVIQA FNVD DL KNFSSKR SDAIFFPPS
Sbjct: 296 MEWFSIITTPNPVFTHLAGSIGVWKSLSPEVIQAAFNVDADLVKNFSSKRASDAIFFPPS 355

[Close]

BLAST of Cla97C09G173190 vs. NCBI nr
Match: XP_004150394.1 (PREDICTED: glutelin type-B 5-like isoform X1 [Cucumis sativus] >KGN44409.1 hypothetical protein Csa_7G281380 [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 3.1e-22
Identity = 53/61 (86.89%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1   MEWFSIISTPNPVFTHLAGSIGVWKSLSSEVIQATFNVDGDLGKNFSSKRGSDAIFFPPS 60
           MEWFSIISTPNPVFTHLAGSIGVWK+LS EVI+A FNV+ DL KNFSSKR SDAIFFPPS
Sbjct: 296 MEWFSIISTPNPVFTHLAGSIGVWKALSPEVIEAAFNVEADLVKNFSSKRSSDAIFFPPS 355

Query: 61  N 62
           N
Sbjct: 356 N 356

[Close]

BLAST of Cla97C09G173190 vs. TrEMBL
Match: tr|A0A1S3CG59|A0A1S3CG59_CUCME (glutelin type-B 5-like OS=Cucumis melo OX=3656 GN=LOC103500083 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 9.1e-23
Identity = 54/61 (88.52%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1   MEWFSIISTPNPVFTHLAGSIGVWKSLSSEVIQATFNVDGDLGKNFSSKRGSDAIFFPPS 60
           MEWFSIISTPNPVFTHLAGSIGVWK+LS EVIQA FNV+ DL KNFSSKR SDAIFFPPS
Sbjct: 296 MEWFSIISTPNPVFTHLAGSIGVWKALSPEVIQAAFNVEADLVKNFSSKRSSDAIFFPPS 355

Query: 61  N 62
           N
Sbjct: 356 N 356

[Close]

BLAST of Cla97C09G173190 vs. TrEMBL
Match: tr|A0A0A0K666|A0A0A0K666_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G281380 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.0e-22
Identity = 53/61 (86.89%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1   MEWFSIISTPNPVFTHLAGSIGVWKSLSSEVIQATFNVDGDLGKNFSSKRGSDAIFFPPS 60
           MEWFSIISTPNPVFTHLAGSIGVWK+LS EVI+A FNV+ DL KNFSSKR SDAIFFPPS
Sbjct: 296 MEWFSIISTPNPVFTHLAGSIGVWKALSPEVIEAAFNVEADLVKNFSSKRSSDAIFFPPS 355

Query: 61  N 62
           N
Sbjct: 356 N 356

[Close]

BLAST of Cla97C09G173190 vs. TrEMBL
Match: tr|A0A165A7K7|A0A165A7K7_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_015597 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.6e-19
Identity = 46/59 (77.97%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 1   MEWFSIISTPNPVFTHLAGSIGVWKSLSSEVIQATFNVDGDLGKNFSSKRGSDAIFFPP 60
           +EWFSIISTPNPVFTHLAGSIG WKSLS +V+QA+FNVD D+ K F SKR +DAIFFPP
Sbjct: 296 LEWFSIISTPNPVFTHLAGSIGAWKSLSPQVLQASFNVDSDVEKQFRSKRTADAIFFPP 354

[Close]

BLAST of Cla97C09G173190 vs. TrEMBL
Match: tr|A0A165WCC5|A0A165WCC5_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_015274 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 8.0e-19
Identity = 46/60 (76.67%), Postives = 52/60 (86.67%), Query Frame = 0


Query: 1   MEWFSIISTPNPVFTHLAGSIGVWKSLSSEVIQATFNVDGDLGKNFSSKRGSDAIFFPPS 60
           +EWFSIISTPNPVFTHLAGSIG WK+LS +V+QA+FNV  D+ K F SKR SDAIFFPPS
Sbjct: 296 LEWFSIISTPNPVFTHLAGSIGAWKALSPQVLQASFNVGSDVEKQFRSKRTSDAIFFPPS 355

[Close]

BLAST of Cla97C09G173190 vs. TrEMBL
Match: tr|A0A1S3VUT8|A0A1S3VUT8_VIGRR (12S seed storage globulin 1-like OS=Vigna radiata var. radiata OX=3916 GN=LOC106778681 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.4e-18
Identity = 45/61 (73.77%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 1   MEWFSIISTPNPVFTHLAGSIGVWKSLSSEVIQATFNVDGDLGKNFSSKRGSDAIFFPPS 60
           +EWFSII+TPNPVFTHLAGSIG WK+LS  V+QA FNVD +L K+F SKR +DAIFFPP 
Sbjct: 314 LEWFSIITTPNPVFTHLAGSIGAWKALSPSVLQAAFNVDEELEKHFRSKRNADAIFFPPP 373

Query: 61  N 62
           N
Sbjct: 374 N 374

[Close]

BLAST of Cla97C09G173190 vs. TAIR10
Match: AT2G28680.1 (RmlC-like cupins superfamily protein)

HSP 1 Score: 87.8 bits (216), Expect = 2.5e-18
Identity = 39/61 (63.93%), Postives = 48/61 (78.69%), Query Frame = 0


Query: 1   MEWFSIISTPNPVFTHLAGSIGVWKSLSSEVIQATFNVDGDLGKNFSSKRGSDAIFFPPS 60
           + WFSI++TP+P+FTHLAG   VWK+LS EV+QA F VD ++ K F SKR SDAIFF PS
Sbjct: 296 LSWFSIVTTPDPIFTHLAGRTSVWKALSPEVLQAAFKVDPEVEKAFRSKRTSDAIFFSPS 355

Query: 61  N 62
           N
Sbjct: 356 N 356

[Close]

BLAST of Cla97C09G173190 vs. TAIR10
Match: AT1G07750.1 (RmlC-like cupins superfamily protein)

HSP 1 Score: 87.4 bits (215), Expect = 3.3e-18
Identity = 39/61 (63.93%), Postives = 48/61 (78.69%), Query Frame = 0


Query: 1   MEWFSIISTPNPVFTHLAGSIGVWKSLSSEVIQATFNVDGDLGKNFSSKRGSDAIFFPPS 60
           M WFSI++TP+P+FTHLAG+  VWKSLS EV+QA F V  ++ K+F S R S AIFFPPS
Sbjct: 296 MSWFSIVTTPDPIFTHLAGNTSVWKSLSPEVLQAAFKVAPEVEKSFRSTRTSSAIFFPPS 355

Query: 61  N 62
           N
Sbjct: 356 N 356

The following BLAST results are available for this feature:

BLAST of Cla97C09G173190 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022976927.1	8.0e-23	91.67	glutelin type-D 1-like [Cucurbita maxima]	[more]
XP_023535755.1	8.0e-23	91.67	glutelin type-D 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_008461502.1	1.4e-22	88.52	PREDICTED: glutelin type-B 5-like [Cucumis melo]	[more]
XP_022932542.1	1.8e-22	90.00	glutelin type-D 1-like [Cucurbita moschata]	[more]
XP_004150394.1	3.1e-22	86.89	PREDICTED: glutelin type-B 5-like isoform X1 [Cucumis sativus] >KGN44409.1 hypot...	[more]

BLAST of Cla97C09G173190 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CG59\|A0A1S3CG59_CUCME	9.1e-23	88.52	glutelin type-B 5-like OS=Cucumis melo OX=3656 GN=LOC103500083 PE=4 SV=1	[more]
tr\|A0A0A0K666\|A0A0A0K666_CUCSA	2.0e-22	86.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G281380 PE=4 SV=1	[more]
tr\|A0A165A7K7\|A0A165A7K7_DAUCA	3.6e-19	77.97	Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_015597 ...	[more]
tr\|A0A165WCC5\|A0A165WCC5_DAUCA	8.0e-19	76.67	Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_015274 ...	[more]
tr\|A0A1S3VUT8\|A0A1S3VUT8_VIGRR	1.4e-18	73.77	12S seed storage globulin 1-like OS=Vigna radiata var. radiata OX=3916 GN=LOC106...	[more]

BLAST of Cla97C09G173190 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C09G173190 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G28680.1	2.5e-18	63.93	RmlC-like cupins superfamily protein	[more]
AT1G07750.1	3.3e-18	63.93	RmlC-like cupins superfamily protein	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011051	RmlC_Cupin_sf
IPR014710	RmlC-like_jellyroll

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0045735	nutrient reservoir activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C09G173190.1	Cla97C09G173190.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014710	RmlC-like jelly roll fold	GENE3D	G3DSA:2.60.120.10		coord: 1..61 e-value: 7.5E-7 score: 30.6
None	No IPR available	PANTHER	PTHR31189:SF24	SUBFAMILY NOT NAMED	coord: 1..61
None	No IPR available	PANTHER	PTHR31189	FAMILY NOT NAMED	coord: 1..61
IPR011051	RmlC-like cupin domain superfamily	SUPERFAMILY	SSF51182	RmlC-like cupins	coord: 1..60

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C09G173190	Cla016357	Watermelon (97103) v1	wmwmbB041
Cla97C09G173190	Bhi09G001338	Wax gourd	wgowmbB608

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C09G173190	Cucumber (Gy14) v2	cgybwmbB542
Cla97C09G173190	Cucumber (Gy14) v1	cgywmbB433
Cla97C09G173190	Cucurbita maxima (Rimu)	cmawmbB049
Cla97C09G173190	Cucurbita maxima (Rimu)	cmawmbB052
Cla97C09G173190	Cucurbita maxima (Rimu)	cmawmbB510
Cla97C09G173190	Cucurbita maxima (Rimu)	cmawmbB516
Cla97C09G173190	Cucurbita maxima (Rimu)	cmawmbB513
Cla97C09G173190	Cucurbita moschata (Rifu)	cmowmbB036
Cla97C09G173190	Cucurbita moschata (Rifu)	cmowmbB039
Cla97C09G173190	Cucurbita moschata (Rifu)	cmowmbB491
Cla97C09G173190	Cucurbita moschata (Rifu)	cmowmbB495
Cla97C09G173190	Cucurbita moschata (Rifu)	cmowmbB498
Cla97C09G173190	Wild cucumber (PI 183967)	cpiwmbB597
Cla97C09G173190	Cucumber (Chinese Long) v3	cucwmbB593
Cla97C09G173190	Cucumber (Chinese Long) v2	cuwmbB571
Cla97C09G173190	Bottle gourd (USVL1VR-Ls)	lsiwmbB212
Cla97C09G173190	Melon (DHL92) v3.6.1	medwmbB204
Cla97C09G173190	Melon (DHL92) v3.5.1	mewmbB220
Cla97C09G173190	Watermelon (Charleston Gray)	wcgwmbB035