Cla97C09G172840 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C09G172840
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Unknown protein
Location	Cla97Chr09 : 9427504 .. 9428223 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTATGCTCTTAGCCAAAGAAGAAAAAAGAAAGAAAATGAACTTTCAGAGATGAAGAAGGGAATTATTATTCCATGGGAGCAAAAGAAAGAAGTGATTGATAAAGAAGAAATTCAACTCCACAAAGACTTGGATCAACTTACAAATTGGGTAATTATAATAATTATTTTCTTCTATTTTCTTCAATTCTCTAATATTTTATTTTACTTTATTCTCCCTGAAATAGAAAAAAAAAAAAAAAAAAACTCTCATTTTTTGTAGATAAAAATGGTGGATTCCATGAATGATGAGAAGCTGAAAGAGTATCTACAAGATACACCACAAGAATTCAAGATTCTCAAAATCCCAAAGTGCAACTCGAAGCGAAATGTAAGATTATATTATTGTTTGCTTTTATTTAGGCCTTTTTTATAATAAAATACACCATAGCAGTTGCAAACATTCTAATATTTTTCAAAATGATTTATTTTTTAAATTAAACACTTGAAAATATATTTCAAACACATCCTAAATCTAAACACAGTAGAGAGATGAAAAAAAAAAAAAACCCCTTTTGCGTTAATTTTGATCATCTTTTGTTTACCAATAACTAAAAAAATTAGAGTTTGTTGATGGCAGGGGCAAAAAATTGAGGATCCTAAATATTGGGCCTCTTATGGGATAATGGCTTCAGTTTGGAAGTTTCACCAGCAAGACAATGAGCAGCAACTTTCTTAA

mRNA sequence

ATGAATTATGCTCTTAGCCAAAGAAGAAAAAAGAAAGAAAATGAACTTTCAGAGATGAAGAAGGGAATTATTATTCCATGGGAGCAAAAGAAAGAAGTGATTGATAAAGAAGAAATTCAACTCCACAAAGACTTGGATCAACTTACAAATTGGATAAAAATGGTGGATTCCATGAATGATGAGAAGCTGAAAGAGTATCTACAAGATACACCACAAGAATTCAAGATTCTCAAAATCCCAAAGTGCAACTCGAAGCGAAATGGGCAAAAAATTGAGGATCCTAAATATTGGGCCTCTTATGGGATAATGGCTTCAGTTTGGAAGTTTCACCAGCAAGACAATGAGCAGCAACTTTCTTAA

Coding sequence (CDS)

ATGAATTATGCTCTTAGCCAAAGAAGAAAAAAGAAAGAAAATGAACTTTCAGAGATGAAGAAGGGAATTATTATTCCATGGGAGCAAAAGAAAGAAGTGATTGATAAAGAAGAAATTCAACTCCACAAAGACTTGGATCAACTTACAAATTGGATAAAAATGGTGGATTCCATGAATGATGAGAAGCTGAAAGAGTATCTACAAGATACACCACAAGAATTCAAGATTCTCAAAATCCCAAAGTGCAACTCGAAGCGAAATGGGCAAAAAATTGAGGATCCTAAATATTGGGCCTCTTATGGGATAATGGCTTCAGTTTGGAAGTTTCACCAGCAAGACAATGAGCAGCAACTTTCTTAA

Protein sequence

MNYALSQRRKKKENELSEMKKGIIIPWEQKKEVIDKEEIQLHKDLDQLTNWIKMVDSMNDEKLKEYLQDTPQEFKILKIPKCNSKRNGQKIEDPKYWASYGIMASVWKFHQQDNEQQLS

Homology

[Close]

BLAST of Cla97C09G172840 vs. NCBI nr
Match: XP_016902781.1 (PREDICTED: uncharacterized protein LOC107991884 isoform X1 [Cucumis melo])

HSP 1 Score: 188.3 bits (477), Expect = 1.5e-44
Identity = 95/121 (78.51%), Postives = 104/121 (85.95%), Query Frame = 0


Query: 1   MNYALSQRRKKKENELSEM----KKGIIIPWEQKKEVIDKEEIQLHKDLDQLTNWIKMVD 60
           MN    +R  KKE+E SEM    KKGIIIPWEQKKEVIDKEEIQ+ KDLDQLTNWIKMVD
Sbjct: 1   MNSHSQRRNNKKEHEFSEMNKKIKKGIIIPWEQKKEVIDKEEIQIQKDLDQLTNWIKMVD 60

Query: 61  SMNDEKLKEYLQDTPQEFKILKIPKCNSKRNGQKIEDPKYWASYGIMASVWKFHQQDNEQ 118
           +MNDEKLKEYLQDTPQE KI+KI KCN+KR  QKIE+PKY ASYGIMASVWKFH+QDN+Q
Sbjct: 61  AMNDEKLKEYLQDTPQELKIIKITKCNTKRKEQKIENPKYLASYGIMASVWKFHKQDNDQ 120

[Close]

BLAST of Cla97C09G172840 vs. NCBI nr
Match: XP_022937006.1 (uncharacterized protein LOC111443429 [Cucurbita moschata])

HSP 1 Score: 173.7 bits (439), Expect = 3.7e-40
Identity = 86/120 (71.67%), Postives = 101/120 (84.17%), Query Frame = 0


Query: 9   RKKKENELSEMKKGI--------IIPWEQKKEVIDKEEIQLHKDLDQLTNWIKMVDSMND 68
           +K++++ + EM+K I         IPWE+KKE+IDKEE+QLHKDLDQLTNWIKMVDSMND
Sbjct: 2   KKEEKSGVLEMEKRIRKKLKNTNFIPWEEKKELIDKEELQLHKDLDQLTNWIKMVDSMND 61

Query: 69  EKLKEYLQDTPQEFKILKIPKCNSKRNGQKIEDPKYWASYGIMASVWKFHQQDNEQ-QLS 120
           EKLK+YLQD P EFKILKIP+CN +RN Q+ EDPKYW SYGIMASVWKFH+QDNEQ QLS
Sbjct: 62  EKLKDYLQDRPNEFKILKIPRCNPRRNEQRSEDPKYWTSYGIMASVWKFHKQDNEQHQLS 121

[Close]

BLAST of Cla97C09G172840 vs. NCBI nr
Match: XP_022975889.1 (uncharacterized protein LOC111476458 [Cucurbita maxima])

HSP 1 Score: 172.2 bits (435), Expect = 1.1e-39
Identity = 82/103 (79.61%), Postives = 91/103 (88.35%), Query Frame = 0


Query: 18  EMKKGIIIPWEQKKEVIDKEEIQLHKDLDQLTNWIKMVDSMNDEKLKEYLQDTPQEFKIL 77
           ++K    IPWE+KKE+IDKEEIQLHKDLDQLTNWIKMVDSMNDEKLK+YLQ  P EFKIL
Sbjct: 8   KLKNTNFIPWEEKKELIDKEEIQLHKDLDQLTNWIKMVDSMNDEKLKDYLQHRPNEFKIL 67

Query: 78  KIPKCNSKRNGQKIEDPKYWASYGIMASVWKFHQQDNEQ-QLS 120
           KIP+CN +RN Q+ EDPKYW SYGIMASVWKFH+QDNEQ QLS
Sbjct: 68  KIPRCNPRRNEQRSEDPKYWTSYGIMASVWKFHKQDNEQHQLS 110

[Close]

BLAST of Cla97C09G172840 vs. NCBI nr
Match: XP_023535574.1 (uncharacterized protein LOC111796971 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 171.8 bits (434), Expect = 1.4e-39
Identity = 86/120 (71.67%), Postives = 100/120 (83.33%), Query Frame = 0


Query: 9   RKKKENELSEMKKGI--------IIPWEQKKEVIDKEEIQLHKDLDQLTNWIKMVDSMND 68
           +K++++ + EM+K I         IPWE+KKE+IDKEEIQLHKDLDQLTNWIKMVDSMND
Sbjct: 2   KKEQKSGVLEMEKRIRKKLKNTNFIPWEEKKELIDKEEIQLHKDLDQLTNWIKMVDSMND 61

Query: 69  EKLKEYLQDTPQEFKILKIPKCNSKRNGQKIEDPKYWASYGIMASVWKFHQQDNEQ-QLS 120
           EKLK+YLQ  P EFKILKIP+CN +RN Q+ EDPKYW SYGIMASVWKFH+QDNEQ QLS
Sbjct: 62  EKLKDYLQHRPNEFKILKIPRCNPRRNEQRSEDPKYWTSYGIMASVWKFHKQDNEQHQLS 121

[Close]

BLAST of Cla97C09G172840 vs. NCBI nr
Match: XP_022143680.1 (uncharacterized protein LOC111013524 isoform X2 [Momordica charantia])

HSP 1 Score: 141.4 bits (355), Expect = 2.0e-30
Identity = 67/99 (67.68%), Postives = 82/99 (82.83%), Query Frame = 0


Query: 20  KKGIIIPWEQKKEVIDKEEIQLHKDLDQLTNWIKMVDSMNDEKLKEYLQDTPQEFKILKI 79
           KKG  I W++KK+V D+E+I L KDLDQL NWI+MVDSMNDE+LK+YL + P+E K LKI
Sbjct: 7   KKG--ISWQEKKDVTDQEQILLRKDLDQLKNWIQMVDSMNDEQLKDYLHNRPKELKTLKI 66

Query: 80  PKCNSKRNGQKIEDPKYWASYGIMASVWKFHQQDNEQQL 119
            + NS+R  +KIEDP+YWASYGIMASVWKFH+QDN  QL
Sbjct: 67  QQSNSRRRRRKIEDPRYWASYGIMASVWKFHKQDNNDQL 103

[Close]

BLAST of Cla97C09G172840 vs. TrEMBL
Match: tr|A0A1S4E3H5|A0A1S4E3H5_CUCME (uncharacterized protein LOC107991884 isoform X1 OS=Cucumis melo OX=3656 GN=LOC107991884 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 9.7e-45
Identity = 95/121 (78.51%), Postives = 104/121 (85.95%), Query Frame = 0


Query: 1   MNYALSQRRKKKENELSEM----KKGIIIPWEQKKEVIDKEEIQLHKDLDQLTNWIKMVD 60
           MN    +R  KKE+E SEM    KKGIIIPWEQKKEVIDKEEIQ+ KDLDQLTNWIKMVD
Sbjct: 1   MNSHSQRRNNKKEHEFSEMNKKIKKGIIIPWEQKKEVIDKEEIQIQKDLDQLTNWIKMVD 60

Query: 61  SMNDEKLKEYLQDTPQEFKILKIPKCNSKRNGQKIEDPKYWASYGIMASVWKFHQQDNEQ 118
           +MNDEKLKEYLQDTPQE KI+KI KCN+KR  QKIE+PKY ASYGIMASVWKFH+QDN+Q
Sbjct: 61  AMNDEKLKEYLQDTPQELKIIKITKCNTKRKEQKIENPKYLASYGIMASVWKFHKQDNDQ 120

[Close]

BLAST of Cla97C09G172840 vs. TrEMBL
Match: tr|A0A1S4E3H8|A0A1S4E3H8_CUCME (uncharacterized protein LOC107991884 isoform X2 OS=Cucumis melo OX=3656 GN=LOC107991884 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 4.4e-29
Identity = 71/94 (75.53%), Postives = 77/94 (81.91%), Query Frame = 0


Query: 1  MNYALSQRRKKKENELSEM----KKGIIIPWEQKKEVIDKEEIQLHKDLDQLTNWIKMVD 60
          MN    +R  KKE+E SEM    KKGIIIPWEQKKEVIDKEEIQ+ KDLDQLTNWIKMVD
Sbjct: 1  MNSHSQRRNNKKEHEFSEMNKKIKKGIIIPWEQKKEVIDKEEIQIQKDLDQLTNWIKMVD 60

Query: 61 SMNDEKLKEYLQDTPQEFKILKIPKCNSKRNGQK 91
          +MNDEKLKEYLQDTPQE KI+KI KCN+KR   K
Sbjct: 61 AMNDEKLKEYLQDTPQELKIIKITKCNTKRKAIK 94

[Close]

BLAST of Cla97C09G172840 vs. TrEMBL
Match: tr|A0A1S4E3I2|A0A1S4E3I2_CUCME (uncharacterized protein LOC107991884 isoform X3 OS=Cucumis melo OX=3656 GN=LOC107991884 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 7.4e-29
Identity = 70/90 (77.78%), Postives = 76/90 (84.44%), Query Frame = 0


Query: 1  MNYALSQRRKKKENELSEM----KKGIIIPWEQKKEVIDKEEIQLHKDLDQLTNWIKMVD 60
          MN    +R  KKE+E SEM    KKGIIIPWEQKKEVIDKEEIQ+ KDLDQLTNWIKMVD
Sbjct: 1  MNSHSQRRNNKKEHEFSEMNKKIKKGIIIPWEQKKEVIDKEEIQIQKDLDQLTNWIKMVD 60

Query: 61 SMNDEKLKEYLQDTPQEFKILKIPKCNSKR 87
          +MNDEKLKEYLQDTPQE KI+KI KCN+KR
Sbjct: 61 AMNDEKLKEYLQDTPQELKIIKITKCNTKR 90

[Close]

BLAST of Cla97C09G172840 vs. TrEMBL
Match: tr|A0A2K1WRI3|A0A2K1WRI3_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_019G082300v3 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.2e-17
Identity = 50/109 (45.87%), Postives = 72/109 (66.06%), Query Frame = 0


Query: 10  KKKENELSEMKKGIIIPWEQKKEVIDKEEIQLHKDLDQLTNWIKMVDSMNDEKLKEYLQD 69
           KKKE   +E      I W++KK++ DKEE  L KD++ L  W   +D+MNDE+LKEYL++
Sbjct: 8   KKKEKIATE---PAAISWKEKKDLADKEEEALVKDIEDLRAWTDKIDAMNDEQLKEYLKN 67

Query: 70  TPQEFKILKIPKCNSKRNGQKIEDPKYWASYGIMASVWKFHQQDNEQQL 119
            P+E K +KI K   ++  Q++   K  AS GIMASVWKFH++DN+  +
Sbjct: 68  RPEELKTVKIQKSKPRQKVQRLGKAKSSASMGIMASVWKFHKEDNDDSV 113

[Close]

BLAST of Cla97C09G172840 vs. TrEMBL
Match: tr|M5Y2A0|M5Y2A0_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa018808mg PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.5e-16
Identity = 45/93 (48.39%), Postives = 64/93 (68.82%), Query Frame = 0


Query: 24  IIPWEQKKEVIDKEEIQLHKDLDQLTNWIKMVDSMNDEKLKEYLQDTPQEFKILKIPKCN 83
           +I WE++K + DKE   L K ++ L  W  M+D+MN+E+LKEYL++ P E K +KI K N
Sbjct: 19  VISWEERKTLADKEAEVLEKQIEDLKTWTNMIDAMNEEQLKEYLKNRPDELKTVKIHKSN 78

Query: 84  SKRNGQKIEDPKYWASYGIMASVWKFHQQDNEQ 117
           SK+  Q+ E PK   S GIMASVWKFH+++  +
Sbjct: 79  SKQRIQR-EKPKCSTSNGIMASVWKFHKEEEHE 110

The following BLAST results are available for this feature:

BLAST of Cla97C09G172840 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016902781.1	1.5e-44	78.51	PREDICTED: uncharacterized protein LOC107991884 isoform X1 [Cucumis melo]	[more]
XP_022937006.1	3.7e-40	71.67	uncharacterized protein LOC111443429 [Cucurbita moschata]	[more]
XP_022975889.1	1.1e-39	79.61	uncharacterized protein LOC111476458 [Cucurbita maxima]	[more]
XP_023535574.1	1.4e-39	71.67	uncharacterized protein LOC111796971 [Cucurbita pepo subsp. pepo]	[more]
XP_022143680.1	2.0e-30	67.68	uncharacterized protein LOC111013524 isoform X2 [Momordica charantia]	[more]

BLAST of Cla97C09G172840 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E3H5\|A0A1S4E3H5_CUCME	9.7e-45	78.51	uncharacterized protein LOC107991884 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S4E3H8\|A0A1S4E3H8_CUCME	4.4e-29	75.53	uncharacterized protein LOC107991884 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S4E3I2\|A0A1S4E3I2_CUCME	7.4e-29	77.78	uncharacterized protein LOC107991884 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A2K1WRI3\|A0A2K1WRI3_POPTR	2.2e-17	45.87	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_019G082300v3 PE=...	[more]
tr\|M5Y2A0\|M5Y2A0_PRUPE	2.5e-16	48.39	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa018808mg PE=4 SV=1	[more]

BLAST of Cla97C09G172840 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C09G172840 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C09G172840.1	Cla97C09G172840.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C09G172840	Cla016403	Watermelon (97103) v1	wmwmbB041
Cla97C09G172840	ClCG09G010090	Watermelon (Charleston Gray)	wcgwmbB035
Cla97C09G172840	CmaCh09G011140	Cucurbita maxima (Rimu)	cmawmbB049
Cla97C09G172840	CmoCh09G011210	Cucurbita moschata (Rifu)	cmowmbB036
Cla97C09G172840	Lsi02G019790	Bottle gourd (USVL1VR-Ls)	lsiwmbB212
Cla97C09G172840	MELO3C028866.2	Melon (DHL92) v3.6.1	medwmbB206
Cla97C09G172840	Carg23303	Silver-seed gourd	carwmbB0284

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C09G172840	Silver-seed gourd	carwmbB0066
Cla97C09G172840	Silver-seed gourd	carwmbB0866
Cla97C09G172840	Cucumber (Gy14) v2	cgybwmbB539
Cla97C09G172840	Cucumber (Gy14) v2	cgybwmbB542
Cla97C09G172840	Cucumber (Gy14) v1	cgywmbB078
Cla97C09G172840	Cucurbita maxima (Rimu)	cmawmbB323
Cla97C09G172840	Cucurbita maxima (Rimu)	cmawmbB516
Cla97C09G172840	Cucurbita maxima (Rimu)	cmawmbB795
Cla97C09G172840	Cucurbita moschata (Rifu)	cmowmbB306
Cla97C09G172840	Cucurbita moschata (Rifu)	cmowmbB498
Cla97C09G172840	Cucurbita moschata (Rifu)	cmowmbB770
Cla97C09G172840	Wild cucumber (PI 183967)	cpiwmbB592
Cla97C09G172840	Wild cucumber (PI 183967)	cpiwmbB597
Cla97C09G172840	Cucumber (Chinese Long) v3	cucwmbB590
Cla97C09G172840	Cucumber (Chinese Long) v3	cucwmbB593
Cla97C09G172840	Cucumber (Chinese Long) v2	cuwmbB567
Cla97C09G172840	Cucumber (Chinese Long) v2	cuwmbB571
Cla97C09G172840	Melon (DHL92) v3.6.1	medwmbB216
Cla97C09G172840	Melon (DHL92) v3.5.1	mewmbB230
Cla97C09G172840	Wax gourd	wgowmbB608