Cla97C09G172790 (gene) Watermelon (97103) v2

NameCla97C09G172790
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionExtensin
LocationCla97Chr09 : 9302114 .. 9302860 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCCTCCTATAATAGTCTCTCTTGTTATTGCAGTTTTTGTGGTAGCTCTAAGCTTACCATATACAACTGCGCAAGGCTACAACGATGACAATTCTCCTCCACCACCACCCAAGAAAGACGAATATGACTCACCTCCGCCACCACCAACAAAGTATAAGAACAAGTCACCCCCTCCACCACCATTGCTTAAGAAGTCTCCCCCTCCACCATCACCAAAGAAAGACAAATATTATTCACCTCCACCACCACCACCAACAAGGTACGAGAACAAGTCACCCCCTCCACCACCACCGAAGAAAGACGAATATTACTCACCTCCACCACCGTCAACAGGGTACGAGAACAAGTCACCCCCTCCACCACCACCGAAAAAATATGAATATTACTCACCTCCACCACCGTCAACAGGGTATGAGAATAAGTCACCCCCTCCACCACCACCGAAAAAAGATGAATATTACTCACCTCCACCACCACCAACTAAGTACAAGAACAAGTCACCCCCTCCACCACCAAAGAAAAACAAATATGACTCGCCTTCACCACCACCAACTAAGTACAAGAACAAGTCACCCCCTCCACCACCAAAGAAAAACAAATATGACTCGCCTCCACCACCACCAACTAAATACAAGAACAAGTCACCTCCTCCACCACCGCCACGTAAGAAGTTTTCTCCACCACCCCCAAAAAAAGACGAATACAAGTCACCTCCTCCACCACCATCCCCTTACAACTATTAG

mRNA sequence

ATGGGTCCTCCTATAATAGTCTCTCTTGTTATTGCAGTTTTTGTGGTAGCTCTAAGCTTACCATATACAACTGCGCAAGGCTACAACGATGACAATTCTCCTCCACCACCACCCAAGAAAGACGAATATGACTCACCTCCGCCACCACCAACAAAGTATAAGAACAAGTCACCCCCTCCACCACCATTGCTTAAGAAGTCTCCCCCTCCACCATCACCAAAGAAAGACAAATATTATTCACCTCCACCACCACCACCAACAAGGTACGAGAACAAGTCACCCCCTCCACCACCACCGAAGAAAGACGAATATTACTCACCTCCACCACCGTCAACAGGGTACGAGAACAAGTCACCCCCTCCACCACCACCGAAAAAATATGAATATTACTCACCTCCACCACCGTCAACAGGGTATGAGAATAAGTCACCCCCTCCACCACCACCGAAAAAAGATGAATATTACTCACCTCCACCACCACCAACTAAGTACAAGAACAAGTCACCCCCTCCACCACCAAAGAAAAACAAATATGACTCGCCTTCACCACCACCAACTAAGTACAAGAACAAGTCACCCCCTCCACCACCAAAGAAAAACAAATATGACTCGCCTCCACCACCACCAACTAAATACAAGAACAAGTCACCTCCTCCACCACCGCCACGTAAGAAGTTTTCTCCACCACCCCCAAAAAAAGACGAATACAAGTCACCTCCTCCACCACCATCCCCTTACAACTATTAG

Coding sequence (CDS)

ATGGGTCCTCCTATAATAGTCTCTCTTGTTATTGCAGTTTTTGTGGTAGCTCTAAGCTTACCATATACAACTGCGCAAGGCTACAACGATGACAATTCTCCTCCACCACCACCCAAGAAAGACGAATATGACTCACCTCCGCCACCACCAACAAAGTATAAGAACAAGTCACCCCCTCCACCACCATTGCTTAAGAAGTCTCCCCCTCCACCATCACCAAAGAAAGACAAATATTATTCACCTCCACCACCACCACCAACAAGGTACGAGAACAAGTCACCCCCTCCACCACCACCGAAGAAAGACGAATATTACTCACCTCCACCACCGTCAACAGGGTACGAGAACAAGTCACCCCCTCCACCACCACCGAAAAAATATGAATATTACTCACCTCCACCACCGTCAACAGGGTATGAGAATAAGTCACCCCCTCCACCACCACCGAAAAAAGATGAATATTACTCACCTCCACCACCACCAACTAAGTACAAGAACAAGTCACCCCCTCCACCACCAAAGAAAAACAAATATGACTCGCCTTCACCACCACCAACTAAGTACAAGAACAAGTCACCCCCTCCACCACCAAAGAAAAACAAATATGACTCGCCTCCACCACCACCAACTAAATACAAGAACAAGTCACCTCCTCCACCACCGCCACGTAAGAAGTTTTCTCCACCACCCCCAAAAAAAGACGAATACAAGTCACCTCCTCCACCACCATCCCCTTACAACTATTAG

Protein sequence

MGPPIIVSLVIAVFVVALSLPYTTAQGYNDDNSPPPPPKKDEYDSPPPPPTKYKNKSPPPPPLLKKSPPPPSPKKDKYYSPPPPPPTRYENKSPPPPPPKKDEYYSPPPPSTGYENKSPPPPPPKKYEYYSPPPPSTGYENKSPPPPPPKKDEYYSPPPPPTKYKNKSPPPPPKKNKYDSPSPPPTKYKNKSPPPPPKKNKYDSPPPPPTKYKNKSPPPPPPRKKFSPPPPKKDEYKSPPPPPSPYNY
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009664 plant-type cell wall organization
molecular_function GO:0005199 structural constituent of cell wall

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C09G172790.1Cla97C09G172790.1mRNA


Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 22..248
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 233..248
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..226

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None