Cla97C09G172730 (gene) Watermelon (97103) v2

Overview
NameCla97C09G172730
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
Descriptionextensin-3
LocationCla97Chr09 : 9248715 .. 9248975 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAGATTTAGGTCATCAATGGCCTACCTAGTAGTAGCAATTTTGGTGGCAACTTTGAGTTTGAAATCGGTAATCGCTACCAATTATGTGTATTCTTCTCCACCACCTCCTTACTATGTTTACAAATCTCCTCTTCCTCCTATCTATCAATCTCCCCCACCACCAAAAGTAAAGTATGAGTACAAATCACCGCCACCTCCAGTTTATTACTCTCCTCCACCTCCTATTTACCATTCTCCTCCTCCTCCAGTTTACTAG

mRNA sequence

ATGGGAAGATTTAGGTCATCAATGGCCTACCTAGTAGTAGCAATTTTGGTGGCAACTTTGAGTTTGAAATCGGTAATCGCTACCAATTATGTGTATTCTTCTCCACCACCTCCTTACTATGTTTACAAATCTCCTCTTCCTCCTATCTATCAATCTCCCCCACCACCAAAAGTAAAGTATGAGTACAAATCACCGCCACCTCCAGTTTATTACTCTCCTCCACCTCCTATTTACCATTCTCCTCCTCCTCCAGTTTACTAG

Coding sequence (CDS)

ATGGGAAGATTTAGGTCATCAATGGCCTACCTAGTAGTAGCAATTTTGGTGGCAACTTTGAGTTTGAAATCGGTAATCGCTACCAATTATGTGTATTCTTCTCCACCACCTCCTTACTATGTTTACAAATCTCCTCTTCCTCCTATCTATCAATCTCCCCCACCACCAAAAGTAAAGTATGAGTACAAATCACCGCCACCTCCAGTTTATTACTCTCCTCCACCTCCTATTTACCATTCTCCTCCTCCTCCAGTTTACTAG

Protein sequence

MGRFRSSMAYLVVAILVATLSLKSVIATNYVYSSPPPPYYVYKSPLPPIYQSPPPPKVKYEYKSPPPPVYYSPPPPIYHSPPPPVY
Homology
[Close]
BLAST of Cla97C09G172730 vs. NCBI nr
Match: XP_022143678.1 (extensin-1 [Momordica charantia])

HSP 1 Score: 58.2 bits (139), Expect = 1.6e-05
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 0 

Query: 1  MGRFRSSMAYLVVAILVATLSLKSVIATNYVYSSPPP 38
          MG+ RSSMAYLV AILVATLSL SV+AT+YVYSSPPP
Sbjct: 1  MGKPRSSMAYLVAAILVATLSLPSVMATDYVYSSPPP 37

[Close]
BLAST of Cla97C09G172730 vs. NCBI nr
Match: XP_022936362.1 (extensin-3-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 54.3 bits (129), Expect = 2.4e-04
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 0 

Query: 1  MGRFRSSMAYLVVAILVATLSLKSVIATNYVYSSPPP 38
          MG+ RSSMAYLV  ILVATLS+ SV A +YVYSSPPP
Sbjct: 1  MGKSRSSMAYLVATILVATLSMPSVFAADYVYSSPPP 37

[Close]
BLAST of Cla97C09G172730 vs. NCBI nr
Match: XP_022976064.1 (extensin-3-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 53.5 bits (127), Expect = 4.1e-04
Identity = 27/37 (72.97%), Postives = 31/37 (83.78%), Query Frame = 0 

Query: 1  MGRFRSSMAYLVVAILVATLSLKSVIATNYVYSSPPP 38
          MG+ RSSMAYL+  +LVATLSL SV A +YVYSSPPP
Sbjct: 1  MGKSRSSMAYLLATVLVATLSLPSVFAVDYVYSSPPP 37

[Close]
BLAST of Cla97C09G172730 vs. NCBI nr
Match: XP_022976065.1 (extensin-3-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 53.5 bits (127), Expect = 4.1e-04
Identity = 27/37 (72.97%), Postives = 31/37 (83.78%), Query Frame = 0 

Query: 1  MGRFRSSMAYLVVAILVATLSLKSVIATNYVYSSPPP 38
          MG+ RSSMAYL+  +LVATLSL SV A +YVYSSPPP
Sbjct: 1  MGKSRSSMAYLLATVLVATLSLPSVFAVDYVYSSPPP 37

The following BLAST results are available for this feature:
BLAST of Cla97C09G172730 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022143678.11.6e-0583.78extensin-1 [Momordica charantia][more]
XP_022936362.12.4e-0475.68extensin-3-like isoform X1 [Cucurbita moschata][more]
XP_022976064.14.1e-0472.97extensin-3-like isoform X1 [Cucurbita maxima][more]
XP_022976065.14.1e-0472.97extensin-3-like isoform X2 [Cucurbita maxima][more]
BLAST of Cla97C09G172730 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of Cla97C09G172730 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C09G172730 vs. TAIR10
Match NameE-valueIdentityDescription
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0009664plant-type cell wall organization
Vocabulary: Molecular Function
TermDefinition
GO:0005199structural constituent of cell wall
Vocabulary: INTERPRO
TermDefinition
IPR006706Extensin_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009664 plant-type cell wall organization
molecular_function GO:0005199 structural constituent of cell wall
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C09G172730.1Cla97C09G172730.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006706Extensin domainPFAMPF04554Extensin_2coord: 30..84
e-value: 8.6E-5
score: 22.4

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C09G172730Silver-seed gourdcarwmbB0066
Cla97C09G172730Silver-seed gourdcarwmbB0284
Cla97C09G172730Silver-seed gourdcarwmbB0866
Cla97C09G172730Cucumber (Gy14) v2cgybwmbB542
Cla97C09G172730Cucumber (Gy14) v1cgywmbB078
Cla97C09G172730Cucurbita maxima (Rimu)cmawmbB049
Cla97C09G172730Cucurbita maxima (Rimu)cmawmbB323
Cla97C09G172730Cucurbita maxima (Rimu)cmawmbB516
Cla97C09G172730Cucurbita maxima (Rimu)cmawmbB795
Cla97C09G172730Cucurbita moschata (Rifu)cmowmbB036
Cla97C09G172730Cucurbita moschata (Rifu)cmowmbB306
Cla97C09G172730Cucurbita moschata (Rifu)cmowmbB498
Cla97C09G172730Cucurbita moschata (Rifu)cmowmbB770
Cla97C09G172730Wild cucumber (PI 183967)cpiwmbB597
Cla97C09G172730Cucumber (Chinese Long) v3cucwmbB593
Cla97C09G172730Cucumber (Chinese Long) v2cuwmbB571
Cla97C09G172730Bottle gourd (USVL1VR-Ls)lsiwmbB212
Cla97C09G172730Melon (DHL92) v3.6.1medwmbB216
Cla97C09G172730Melon (DHL92) v3.5.1mewmbB230
Cla97C09G172730Watermelon (Charleston Gray)wcgwmbB035
Cla97C09G172730Watermelon (97103) v1wmwmbB041
Cla97C09G172730Wax gourdwgowmbB608
Cla97C09G172730Wax gourdwgowmbB619