Cla97C09G172550 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C09G172550
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	extensin-3-like
Location	Cla97Chr09 : 8994585 .. 8996097 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAAAAGAGGTTCCTCAATGGCCTCTTTGGCCGTTGCCGTTTTGGCAGCATTTCTCTCTTTAACTTTGCCTTCCGATGCTAATGAGTATCTCTACTCTTCTCCTCCTCCTCCTCGTCATCCAATTGACTACAAGTCTCCGCCTCCTCCACCACCTGTTTACAAGTCTCCTCCACCTCCTCCTCCCTACAAAAAGCCTTATCACCCACCATACCATTACAAATCACCACCACCACCTCCACCAGTATACAAATACAAGTCTCCTCCACCACCTCCACCGTATAAGAAACCGTATCATCCGCCTCATCACCACAAGTCTCCACCACCACCTCCACCTGTTTATAAGTATAAGTCACCCCCTCCACCACCACCTTACAAAAAGCCGTACCACCCACCAACACCCATTTACAAGTACAAGTCTCCACCACCACCGGTTTACAAGTATAAGTCTCCTCCTCCACCACCACCATACAAAAAACCATACCACCCACCAACACCGGTTTACAAGTACAAGTCTCCACCACCACCGGTTTACAAGTACAAGTCTCCTCCTCCACCACCACCCTACAAGAAGCCATATCACCCACCTACACCGGTTTATAAGTACAAATCTCCACCACCACCAGTCTACAAGTACAAGTCACCACCTCCACCACCTCCTTACAAGAAGCCATACCACCCACCAACACCCATTTACAAATACAAATCTCCACCACCACCGGTTTATAAATATAAGTCACCACCTCCACCACCACCCTATAAGAAGCCATACCACCCACCTACACCCATTTACAAGTACAAATCTCCTCCACCACCCGTCTACAAATACAAGTCTCCTCCTCCGCCACCACCCTACAAGAAGCCATACCACCCACCAACACCTATCTATAAGTACAAATCTCCACCACCACCGGTATACAAATACAAATCTCCTCCTCCACCACCACCACCATATAAAAAACCATACCATCCACCATATCACTACAAGTCCCCTCCACCCCCACCACCAGTCTACAAATACAAGTCTCCTCCTCCACCACCACCCTACAAGAAACCATACCACCCACCATATCACTACAAATCTCCACCACCTCCTCCTCCCGTCTATAAATACAAATCTCCTCCACCACCACCACCTCACAAAAAGCCATACCACCCACCTTACCACTACAAGTCTCCACCACCACCGCCACCCATTAGACCCTACCACCCGCCCCCAACTCCAGTGAAGCCATACCACCCACCTCCCGTCTACCACTACAAATCTCCGCCACCACCGCCTTTCTACATCTACGCATCACCCCCACCTCCTCACTACTAGACATTACCCTTAACAAAGGTACCATAATTAACATAAACCTAAACTCAATACATCACCCTATAAATCAAATAATTTATGCTTAGTTTTGATTACTTATAAACTATATTAATCAAACGAATCTTTACTGTCATTGTAGGAAGCAAAAGGAGGATGTCAGAAAATAAATGGCACGTCGATAAGAGCTTTATGA

mRNA sequence

ATGGGGAAAAGAGGTTCCTCAATGGCCTCTTTGGCCGTTGCCGTTTTGGCAGCATTTCTCTCTTTAACTTTGCCTTCCGATGCTAATGAGTATCTCTACTCTTCTCCTCCTCCTCCTCGTCATCCAATTGACTACAAGTCTCCGCCTCCTCCACCACCTGTTTACAAGTCTCCTCCACCTCCTCCTCCCTACAAAAAGCCTTATCACCCACCATACCATTACAAATCACCACCACCACCTCCACCAGTATACAAATACAAGTCTCCTCCACCACCTCCACCGTATAAGAAACCGTATCATCCGCCTCATCACCACAAGTCTCCACCACCACCTCCACCTGTTTATAAGTATAAGTCACCCCCTCCACCACCACCTTACAAAAAGCCGTACCACCCACCAACACCCATTTACAAGTACAAGTCTCCACCACCACCGGTTTACAAGTATAAGTCTCCTCCTCCACCACCACCATACAAAAAACCATACCACCCACCAACACCGGTTTACAAGTACAAGTCTCCACCACCACCGGTTTACAAGTACAAGTCTCCTCCTCCACCACCACCCTACAAGAAGCCATATCACCCACCTACACCGGTTTATAAGTACAAATCTCCACCACCACCAGTCTACAAGTACAAGTCACCACCTCCACCACCTCCTTACAAGAAGCCATACCACCCACCAACACCCATTTACAAATACAAATCTCCACCACCACCGGTTTATAAATATAAGTCACCACCTCCACCACCACCCTATAAGAAGCCATACCACCCACCTACACCCATTTACAAGTACAAATCTCCTCCACCACCCGTCTACAAATACAAGTCTCCTCCTCCGCCACCACCCTACAAGAAGCCATACCACCCACCAACACCTATCTATAAGTACAAATCTCCACCACCACCGGTATACAAATACAAATCTCCTCCTCCACCACCACCACCATATAAAAAACCATACCATCCACCATATCACTACAAGTCCCCTCCACCCCCACCACCAGTCTACAAATACAAGTCTCCTCCTCCACCACCACCCTACAAGAAACCATACCACCCACCATATCACTACAAATCTCCACCACCTCCTCCTCCCGTCTATAAATACAAATCTCCTCCACCACCACCACCTCACAAAAAGCCATACCACCCACCTTACCACTACAAGTCTCCACCACCACCGCCACCCATTAGACCCTACCACCCGCCCCCAACTCCAGTGAAGCCATACCACCCACCTCCCGAAGCAAAAGGAGGATGTCAGAAAATAAATGGCACGTCGATAAGAGCTTTATGA

Coding sequence (CDS)

ATGGGGAAAAGAGGTTCCTCAATGGCCTCTTTGGCCGTTGCCGTTTTGGCAGCATTTCTCTCTTTAACTTTGCCTTCCGATGCTAATGAGTATCTCTACTCTTCTCCTCCTCCTCCTCGTCATCCAATTGACTACAAGTCTCCGCCTCCTCCACCACCTGTTTACAAGTCTCCTCCACCTCCTCCTCCCTACAAAAAGCCTTATCACCCACCATACCATTACAAATCACCACCACCACCTCCACCAGTATACAAATACAAGTCTCCTCCACCACCTCCACCGTATAAGAAACCGTATCATCCGCCTCATCACCACAAGTCTCCACCACCACCTCCACCTGTTTATAAGTATAAGTCACCCCCTCCACCACCACCTTACAAAAAGCCGTACCACCCACCAACACCCATTTACAAGTACAAGTCTCCACCACCACCGGTTTACAAGTATAAGTCTCCTCCTCCACCACCACCATACAAAAAACCATACCACCCACCAACACCGGTTTACAAGTACAAGTCTCCACCACCACCGGTTTACAAGTACAAGTCTCCTCCTCCACCACCACCCTACAAGAAGCCATATCACCCACCTACACCGGTTTATAAGTACAAATCTCCACCACCACCAGTCTACAAGTACAAGTCACCACCTCCACCACCTCCTTACAAGAAGCCATACCACCCACCAACACCCATTTACAAATACAAATCTCCACCACCACCGGTTTATAAATATAAGTCACCACCTCCACCACCACCCTATAAGAAGCCATACCACCCACCTACACCCATTTACAAGTACAAATCTCCTCCACCACCCGTCTACAAATACAAGTCTCCTCCTCCGCCACCACCCTACAAGAAGCCATACCACCCACCAACACCTATCTATAAGTACAAATCTCCACCACCACCGGTATACAAATACAAATCTCCTCCTCCACCACCACCACCATATAAAAAACCATACCATCCACCATATCACTACAAGTCCCCTCCACCCCCACCACCAGTCTACAAATACAAGTCTCCTCCTCCACCACCACCCTACAAGAAACCATACCACCCACCATATCACTACAAATCTCCACCACCTCCTCCTCCCGTCTATAAATACAAATCTCCTCCACCACCACCACCTCACAAAAAGCCATACCACCCACCTTACCACTACAAGTCTCCACCACCACCGCCACCCATTAGACCCTACCACCCGCCCCCAACTCCAGTGAAGCCATACCACCCACCTCCCGAAGCAAAAGGAGGATGTCAGAAAATAAATGGCACGTCGATAAGAGCTTTATGA

Protein sequence

MGKRGSSMASLAVAVLAAFLSLTLPSDANEYLYSSPPPPRHPIDYKSPPPPPPVYKSPPPPPPYKKPYHPPYHYKSPPPPPPVYKYKSPPPPPPYKKPYHPPHHHKSPPPPPPVYKYKSPPPPPPYKKPYHPPTPIYKYKSPPPPVYKYKSPPPPPPYKKPYHPPTPVYKYKSPPPPVYKYKSPPPPPPYKKPYHPPTPVYKYKSPPPPVYKYKSPPPPPPYKKPYHPPTPIYKYKSPPPPVYKYKSPPPPPPYKKPYHPPTPIYKYKSPPPPVYKYKSPPPPPPYKKPYHPPTPIYKYKSPPPPVYKYKSPPPPPPPYKKPYHPPYHYKSPPPPPPVYKYKSPPPPPPYKKPYHPPYHYKSPPPPPPVYKYKSPPPPPPHKKPYHPPYHYKSPPPPPPIRPYHPPPTPVKPYHPPPEAKGGCQKINGTSIRAL

Homology

[Close]

BLAST of Cla97C09G172550 vs. NCBI nr
Match: KGN44514.1 (hypothetical protein Csa_7G322600 [Cucumis sativus])

HSP 1 Score: 58.9 bits (141), Expect = 4.9e-05
Identity = 29/33 (87.88%), Postives = 32/33 (96.97%), Query Frame = 0


Query: 1  MGKRGSSMASLAVAVLAAFLSLTLPSDANEYLY 34
          MGKRGSSMASLA+A+LA FLSLTLPSDAN+YLY
Sbjct: 1  MGKRGSSMASLAIALLATFLSLTLPSDANQYLY 33

[Close]

BLAST of Cla97C09G172550 vs. NCBI nr
Match: XP_011659135.1 (PREDICTED: extensin-like isoform X1 [Cucumis sativus])

HSP 1 Score: 58.9 bits (141), Expect = 4.9e-05
Identity = 29/33 (87.88%), Postives = 32/33 (96.97%), Query Frame = 0


Query: 1  MGKRGSSMASLAVAVLAAFLSLTLPSDANEYLY 34
          MGKRGSSMASLA+A+LA FLSLTLPSDAN+YLY
Sbjct: 1  MGKRGSSMASLAIALLATFLSLTLPSDANQYLY 33

[Close]

BLAST of Cla97C09G172550 vs. NCBI nr
Match: XP_011659136.1 (PREDICTED: extensin-3-like isoform X2 [Cucumis sativus])

HSP 1 Score: 58.9 bits (141), Expect = 4.9e-05
Identity = 29/33 (87.88%), Postives = 32/33 (96.97%), Query Frame = 0


Query: 1  MGKRGSSMASLAVAVLAAFLSLTLPSDANEYLY 34
          MGKRGSSMASLA+A+LA FLSLTLPSDAN+YLY
Sbjct: 1  MGKRGSSMASLAIALLATFLSLTLPSDANQYLY 33

[Close]

BLAST of Cla97C09G172550 vs. NCBI nr
Match: XP_008461484.1 (PREDICTED: extensin-like isoform X1 [Cucumis melo])

HSP 1 Score: 58.2 bits (139), Expect = 8.3e-05
Identity = 29/33 (87.88%), Postives = 32/33 (96.97%), Query Frame = 0


Query: 1  MGKRGSSMASLAVAVLAAFLSLTLPSDANEYLY 34
          MGKRGSSMASLA+AVLA FLSLTLPS+AN+YLY
Sbjct: 1  MGKRGSSMASLAIAVLATFLSLTLPSNANQYLY 33

[Close]

BLAST of Cla97C09G172550 vs. NCBI nr
Match: XP_008461485.1 (PREDICTED: extensin-3-like isoform X2 [Cucumis melo])

HSP 1 Score: 58.2 bits (139), Expect = 8.3e-05
Identity = 29/33 (87.88%), Postives = 32/33 (96.97%), Query Frame = 0


Query: 1  MGKRGSSMASLAVAVLAAFLSLTLPSDANEYLY 34
          MGKRGSSMASLA+AVLA FLSLTLPS+AN+YLY
Sbjct: 1  MGKRGSSMASLAIAVLATFLSLTLPSNANQYLY 33

[Close]

BLAST of Cla97C09G172550 vs. TrEMBL
Match: tr|A0A0A0K6K6|A0A0A0K6K6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G322600 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.2e-05
Identity = 29/33 (87.88%), Postives = 32/33 (96.97%), Query Frame = 0


Query: 1  MGKRGSSMASLAVAVLAAFLSLTLPSDANEYLY 34
          MGKRGSSMASLA+A+LA FLSLTLPSDAN+YLY
Sbjct: 1  MGKRGSSMASLAIALLATFLSLTLPSDANQYLY 33

[Close]

BLAST of Cla97C09G172550 vs. TrEMBL
Match: tr|A0A1S3CG43|A0A1S3CG43_CUCME (extensin-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500069 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.5e-05
Identity = 29/33 (87.88%), Postives = 32/33 (96.97%), Query Frame = 0


Query: 1  MGKRGSSMASLAVAVLAAFLSLTLPSDANEYLY 34
          MGKRGSSMASLA+AVLA FLSLTLPS+AN+YLY
Sbjct: 1  MGKRGSSMASLAIAVLATFLSLTLPSNANQYLY 33

[Close]

BLAST of Cla97C09G172550 vs. TrEMBL
Match: tr|A0A1S3CEK2|A0A1S3CEK2_CUCME (extensin-3-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500069 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.5e-05
Identity = 29/33 (87.88%), Postives = 32/33 (96.97%), Query Frame = 0


Query: 1  MGKRGSSMASLAVAVLAAFLSLTLPSDANEYLY 34
          MGKRGSSMASLA+AVLA FLSLTLPS+AN+YLY
Sbjct: 1  MGKRGSSMASLAIAVLATFLSLTLPSNANQYLY 33

The following BLAST results are available for this feature:

BLAST of Cla97C09G172550 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44514.1	4.9e-05	87.88	hypothetical protein Csa_7G322600 [Cucumis sativus]	[more]
XP_011659135.1	4.9e-05	87.88	PREDICTED: extensin-like isoform X1 [Cucumis sativus]	[more]
XP_011659136.1	4.9e-05	87.88	PREDICTED: extensin-3-like isoform X2 [Cucumis sativus]	[more]
XP_008461484.1	8.3e-05	87.88	PREDICTED: extensin-like isoform X1 [Cucumis melo]	[more]
XP_008461485.1	8.3e-05	87.88	PREDICTED: extensin-3-like isoform X2 [Cucumis melo]	[more]

BLAST of Cla97C09G172550 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K6K6\|A0A0A0K6K6_CUCSA	3.2e-05	87.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G322600 PE=4 SV=1	[more]
tr\|A0A1S3CG43\|A0A1S3CG43_CUCME	5.5e-05	87.88	extensin-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500069 PE=4 SV=1	[more]
tr\|A0A1S3CEK2\|A0A1S3CEK2_CUCME	5.5e-05	87.88	extensin-3-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500069 PE=4 SV=1	[more]

BLAST of Cla97C09G172550 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C09G172550 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009664	plant-type cell wall organization
molecular_function	GO:0005199	structural constituent of cell wall

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C09G172550.1	Cla97C09G172550.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 369..416
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 369..434

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C09G172550	Wax gourd	wgowmbB608
Cla97C09G172550	Silver-seed gourd	carwmbB1071
Cla97C09G172550	Cucumber (Gy14) v2	cgybwmbB542
Cla97C09G172550	Cucumber (Gy14) v1	cgywmbB078
Cla97C09G172550	Cucurbita maxima (Rimu)	cmawmbB049
Cla97C09G172550	Cucurbita maxima (Rimu)	cmawmbB516
Cla97C09G172550	Cucurbita moschata (Rifu)	cmowmbB036
Cla97C09G172550	Cucurbita moschata (Rifu)	cmowmbB498
Cla97C09G172550	Wild cucumber (PI 183967)	cpiwmbB597
Cla97C09G172550	Cucumber (Chinese Long) v3	cucwmbB593
Cla97C09G172550	Cucumber (Chinese Long) v2	cuwmbB571
Cla97C09G172550	Bottle gourd (USVL1VR-Ls)	lsiwmbB212
Cla97C09G172550	Melon (DHL92) v3.6.1	medwmbB196
Cla97C09G172550	Melon (DHL92) v3.6.1	medwmbB219
Cla97C09G172550	Melon (DHL92) v3.5.1	mewmbB212
Cla97C09G172550	Melon (DHL92) v3.5.1	mewmbB234
Cla97C09G172550	Watermelon (Charleston Gray)	wcgwmbB035
Cla97C09G172550	Watermelon (97103) v1	wmwmbB041