Cla97C09G170310 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C09G170310
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	hyoscyamine 6-dioxygenase-like
Location	Cla97Chr09 : 6696701 .. 6696916 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGCTGAAATGAATAATTTTGTATCCAACTGGGAGGGTGTTGAATCAGTACCGGAAAGTTATGTTTGTCCGCCGGAAGAGAGGCCGGGCGTTGCAGTGAAGACGACGATGCCAGTACTCGATTTTGCCGCACACAATCGGTCCGTTCTCTTCCAAAAAATCCTCGACAGTACTCACGAGTTCGGAGTTTTTCAGGTTTCAAAGAGCTCATGA

mRNA sequence

ATGATGGCTGAAATGAATAATTTTGTATCCAACTGGGAGGGTGTTGAATCAGTACCGGAAAGTTATGTTTGTCCGCCGGAAGAGAGGCCGGGCGTTGCAGTGAAGACGACGATGCCAGTACTCGATTTTGCCGCACACAATCGGTCCGTTCTCTTCCAAAAAATCCTCGACAGTACTCACGAGTTCGGAGTTTTTCAGGTTTCAAAGAGCTCATGA

Coding sequence (CDS)

ATGATGGCTGAAATGAATAATTTTGTATCCAACTGGGAGGGTGTTGAATCAGTACCGGAAAGTTATGTTTGTCCGCCGGAAGAGAGGCCGGGCGTTGCAGTGAAGACGACGATGCCAGTACTCGATTTTGCCGCACACAATCGGTCCGTTCTCTTCCAAAAAATCCTCGACAGTACTCACGAGTTCGGAGTTTTTCAGGTTTCAAAGAGCTCATGA

Protein sequence

MMAEMNNFVSNWEGVESVPESYVCPPEERPGVAVKTTMPVLDFAAHNRSVLFQKILDSTHEFGVFQVSKSS

Homology

[Close]

BLAST of Cla97C09G170310 vs. NCBI nr
Match: KGN44745.1 (hypothetical protein Csa_7G376360 [Cucumis sativus])

HSP 1 Score: 108.2 bits (269), Expect = 1.1e-20
Identity = 52/66 (78.79%), Postives = 60/66 (90.91%), Query Frame = 0


Query: 2  MAEMNNFVSNWEGVESVPESYVCPPEERPGVAVKTTMPVLDFAAHNRSVLFQKILDSTHE 61
          MA+M NFVSNWEGVESVPESYV P E+RPG+A+K T+PVLDFA  +R++LFQKILDSTHE
Sbjct: 1  MAQM-NFVSNWEGVESVPESYVWPQEKRPGIALKKTIPVLDFATQDRALLFQKILDSTHE 60

Query: 62 FGVFQV 68
          FGVFQV
Sbjct: 61 FGVFQV 65

[Close]

BLAST of Cla97C09G170310 vs. NCBI nr
Match: XP_008451637.2 (PREDICTED: hyoscyamine 6-dioxygenase-like [Cucumis melo])

HSP 1 Score: 101.7 bits (252), Expect = 1.1e-18
Identity = 44/61 (72.13%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 7  NFVSNWEGVESVPESYVCPPEERPGVAVKTTMPVLDFAAHNRSVLFQKILDSTHEFGVFQ 66
          NFVSNWEGVESVPESYVCPPE+RP + +K  +PVLDFA  ++++LFQKILDS HE G+FQ
Sbjct: 2  NFVSNWEGVESVPESYVCPPEKRPSIVLKKPIPVLDFATQDQALLFQKILDSNHELGIFQ 61

Query: 67 V 68
          V
Sbjct: 62 V 62

[Close]

BLAST of Cla97C09G170310 vs. NCBI nr
Match: XP_022143610.1 (hyoscyamine 6-dioxygenase-like [Momordica charantia])

HSP 1 Score: 84.0 bits (206), Expect = 2.3e-13
Identity = 41/69 (59.42%), Postives = 50/69 (72.46%), Query Frame = 0


Query: 2  MAEMNNFVSNWEGVESVPESYVCPPEERPG---VAVKTTMPVLDFAAHNRSVLFQKILDS 61
          M +  NFVSNW GVESVPESYV PPE+RPG   V V+  +PV+D   H+R+ L  KILD+
Sbjct: 1  MGDQVNFVSNWVGVESVPESYVYPPEKRPGNVAVPVENAIPVVDLTDHDRAFLVHKILDA 60

Query: 62 THEFGVFQV 68
          + EFG FQV
Sbjct: 61 SQEFGFFQV 69

[Close]

BLAST of Cla97C09G170310 vs. NCBI nr
Match: KGN44744.1 (hypothetical protein Csa_7G375860 [Cucumis sativus])

HSP 1 Score: 83.2 bits (204), Expect = 3.9e-13
Identity = 36/60 (60.00%), Postives = 48/60 (80.00%), Query Frame = 0


Query: 8  FVSNWEGVESVPESYVCPPEERPGVAVKTTMPVLDFAAHNRSVLFQKILDSTHEFGVFQV 67
          FVSNW+G+ SVPE+YVCPPE+R GV+VK  +PV+D A  +R +L +K+LD + EFG FQV
Sbjct: 6  FVSNWKGIGSVPETYVCPPEKRVGVSVKKKIPVIDLATEDRDLLSKKVLDVSQEFGFFQV 65

[Close]

BLAST of Cla97C09G170310 vs. NCBI nr
Match: XP_008451257.1 (PREDICTED: hyoscyamine 6-dioxygenase-like [Cucumis melo])

HSP 1 Score: 82.0 bits (201), Expect = 8.8e-13
Identity = 38/66 (57.58%), Postives = 50/66 (75.76%), Query Frame = 0


Query: 2  MAEMNNFVSNWEGVESVPESYVCPPEERPGVAVKTTMPVLDFAAHNRSVLFQKILDSTHE 61
          M     FVSNW+GVESVPE+YV PPE+R GV+VK T+PV+D+A  +R++L +K+ D T E
Sbjct: 1  MMSQTKFVSNWKGVESVPETYVYPPEKRFGVSVKKTIPVIDWAIDDRTLLLKKVHDVTQE 60

Query: 62 FGVFQV 68
          FG  QV
Sbjct: 61 FGFVQV 66

[Close]

BLAST of Cla97C09G170310 vs. TrEMBL
Match: tr|A0A0A0K4U9|A0A0A0K4U9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G376360 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 7.6e-21
Identity = 52/66 (78.79%), Postives = 60/66 (90.91%), Query Frame = 0


Query: 2  MAEMNNFVSNWEGVESVPESYVCPPEERPGVAVKTTMPVLDFAAHNRSVLFQKILDSTHE 61
          MA+M NFVSNWEGVESVPESYV P E+RPG+A+K T+PVLDFA  +R++LFQKILDSTHE
Sbjct: 1  MAQM-NFVSNWEGVESVPESYVWPQEKRPGIALKKTIPVLDFATQDRALLFQKILDSTHE 60

Query: 62 FGVFQV 68
          FGVFQV
Sbjct: 61 FGVFQV 65

[Close]

BLAST of Cla97C09G170310 vs. TrEMBL
Match: tr|A0A1S3BS12|A0A1S3BS12_CUCME (hyoscyamine 6-dioxygenase-like OS=Cucumis melo OX=3656 GN=LOC103492870 PE=3 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 7.1e-19
Identity = 44/61 (72.13%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 7  NFVSNWEGVESVPESYVCPPEERPGVAVKTTMPVLDFAAHNRSVLFQKILDSTHEFGVFQ 66
          NFVSNWEGVESVPESYVCPPE+RP + +K  +PVLDFA  ++++LFQKILDS HE G+FQ
Sbjct: 2  NFVSNWEGVESVPESYVCPPEKRPSIVLKKPIPVLDFATQDQALLFQKILDSNHELGIFQ 61

Query: 67 V 68
          V
Sbjct: 62 V 62

[Close]

BLAST of Cla97C09G170310 vs. TrEMBL
Match: tr|A0A0A0K745|A0A0A0K745_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G375860 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.6e-13
Identity = 36/60 (60.00%), Postives = 48/60 (80.00%), Query Frame = 0


Query: 8  FVSNWEGVESVPESYVCPPEERPGVAVKTTMPVLDFAAHNRSVLFQKILDSTHEFGVFQV 67
          FVSNW+G+ SVPE+YVCPPE+R GV+VK  +PV+D A  +R +L +K+LD + EFG FQV
Sbjct: 6  FVSNWKGIGSVPETYVCPPEKRVGVSVKKKIPVIDLATEDRDLLSKKVLDVSQEFGFFQV 65

[Close]

BLAST of Cla97C09G170310 vs. TrEMBL
Match: tr|A0A1S3BRU2|A0A1S3BRU2_CUCME (hyoscyamine 6-dioxygenase-like OS=Cucumis melo OX=3656 GN=LOC103492607 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 5.8e-13
Identity = 38/66 (57.58%), Postives = 50/66 (75.76%), Query Frame = 0


Query: 2  MAEMNNFVSNWEGVESVPESYVCPPEERPGVAVKTTMPVLDFAAHNRSVLFQKILDSTHE 61
          M     FVSNW+GVESVPE+YV PPE+R GV+VK T+PV+D+A  +R++L +K+ D T E
Sbjct: 1  MMSQTKFVSNWKGVESVPETYVYPPEKRFGVSVKKTIPVIDWAIDDRTLLLKKVHDVTQE 60

Query: 62 FGVFQV 68
          FG  QV
Sbjct: 61 FGFVQV 66

[Close]

BLAST of Cla97C09G170310 vs. TrEMBL
Match: tr|A0A0A0K5H3|A0A0A0K5H3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G378370 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.2e-11
Identity = 36/63 (57.14%), Postives = 48/63 (76.19%), Query Frame = 0


Query: 8  FVSNWEGVESVPESYVCPPEERPG---VAVKTTMPVLDFAAHNRSVLFQKILDSTHEFGV 67
          FVSNWE VESVPESYV PPE+RPG   V +   +PV+D +  +R++L +KILD++ EFG 
Sbjct: 8  FVSNWETVESVPESYVYPPEKRPGNIVVPMAKAIPVIDLSIRDRTLLVRKILDASKEFGF 67

[Close]

BLAST of Cla97C09G170310 vs. TAIR10
Match: AT2G44800.1 (2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein)

HSP 1 Score: 41.6 bits (96), Expect = 2.4e-04
Identity = 24/63 (38.10%), Postives = 35/63 (55.56%), Query Frame = 0


Query: 14 GVESVPESYVCPPEERPGV-----AVKTTMPVLDFAAHN----RSVLFQKILDSTHEFGV 68
          GV  VP+ YV PP +RP +       +TT+PV+D +  +    RS+   +I  +  EFG 
Sbjct: 23 GVPQVPDRYVLPPSQRPALGSSLGTSETTLPVIDLSLLHQPFLRSLAIHEISMACKEFGF 82

The following BLAST results are available for this feature:

BLAST of Cla97C09G170310 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44745.1	1.1e-20	78.79	hypothetical protein Csa_7G376360 [Cucumis sativus]	[more]
XP_008451637.2	1.1e-18	72.13	PREDICTED: hyoscyamine 6-dioxygenase-like [Cucumis melo]	[more]
XP_022143610.1	2.3e-13	59.42	hyoscyamine 6-dioxygenase-like [Momordica charantia]	[more]
KGN44744.1	3.9e-13	60.00	hypothetical protein Csa_7G375860 [Cucumis sativus]	[more]
XP_008451257.1	8.8e-13	57.58	PREDICTED: hyoscyamine 6-dioxygenase-like [Cucumis melo]	[more]

BLAST of Cla97C09G170310 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K4U9\|A0A0A0K4U9_CUCSA	7.6e-21	78.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G376360 PE=3 SV=1	[more]
tr\|A0A1S3BS12\|A0A1S3BS12_CUCME	7.1e-19	72.13	hyoscyamine 6-dioxygenase-like OS=Cucumis melo OX=3656 GN=LOC103492870 PE=3 SV=1	[more]
tr\|A0A0A0K745\|A0A0A0K745_CUCSA	2.6e-13	60.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G375860 PE=3 SV=1	[more]
tr\|A0A1S3BRU2\|A0A1S3BRU2_CUCME	5.8e-13	57.58	hyoscyamine 6-dioxygenase-like OS=Cucumis melo OX=3656 GN=LOC103492607 PE=3 SV=1	[more]
tr\|A0A0A0K5H3\|A0A0A0K5H3_CUCSA	4.2e-11	57.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G378370 PE=3 SV=1	[more]

BLAST of Cla97C09G170310 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C09G170310 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G44800.1	2.4e-04	38.10	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR027443	IPNS-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
molecular_function	GO:0051213	dioxygenase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016491	oxidoreductase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C09G170310.1	Cla97C09G170310.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027443	Isopenicillin N synthase-like	GENE3D	G3DSA:2.60.120.330		coord: 4..71 e-value: 7.7E-6 score: 27.6
None	No IPR available	SUPERFAMILY	SSF51197	Clavaminate synthase-like	coord: 12..68

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C09G170310	Silver-seed gourd	carwmbB0235
Cla97C09G170310	Silver-seed gourd	carwmbB1013
Cla97C09G170310	Cucumber (Gy14) v2	cgybwmbB542
Cla97C09G170310	Cucumber (Gy14) v1	cgywmbB670
Cla97C09G170310	Cucurbita maxima (Rimu)	cmawmbB392
Cla97C09G170310	Cucurbita maxima (Rimu)	cmawmbB665
Cla97C09G170310	Cucurbita maxima (Rimu)	cmawmbB873
Cla97C09G170310	Cucurbita maxima (Rimu)	cmawmbB940
Cla97C09G170310	Cucurbita maxima (Rimu)	cmawmbB944
Cla97C09G170310	Cucurbita moschata (Rifu)	cmowmbB375
Cla97C09G170310	Cucurbita moschata (Rifu)	cmowmbB916
Cla97C09G170310	Cucurbita moschata (Rifu)	cmowmbB920
Cla97C09G170310	Wild cucumber (PI 183967)	cpiwmbB597
Cla97C09G170310	Cucumber (Chinese Long) v3	cucwmbB593
Cla97C09G170310	Cucumber (Chinese Long) v2	cuwmbB571
Cla97C09G170310	Bottle gourd (USVL1VR-Ls)	lsiwmbB212
Cla97C09G170310	Melon (DHL92) v3.6.1	medwmbB215
Cla97C09G170310	Melon (DHL92) v3.5.1	mewmbB229
Cla97C09G170310	Watermelon (Charleston Gray)	wcgwmbB035
Cla97C09G170310	Watermelon (97103) v1	wmwmbB041
Cla97C09G170310	Wax gourd	wgowmbB608
Cla97C09G170310	Wax gourd	wgowmbB621