Cla97C09G168970 (gene) Watermelon (97103) v2

Overview
NameCla97C09G168970
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionUnknown protein
LocationCla97Chr09 : 5274760 .. 5275066 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAAGCTTTGTTGCTCTGGTGATGATGATGGTGGATTGGATCTTATGGGAATTTTGATGGCCATTGTTATAGCTCTCACCCTCATGCTCATCTGCCAGCCTCAACCGCGCCGAGTTTATGTTTTGCATCGTTGGCCTTGAGATTCAACTCCAATCATCACGAAGGGTGAAGCTTCCGAGTTCGTTTCTTGTATGCCATAAATCTTTCTTTGTAGATTCACCTTTCTATTATGAAAATCATCTTTCATATTGTAATTTGTTGGTTAATCTCAATTTTCAAAAGAAACCAATTCTTAGATGCTGA

mRNA sequence

ATGGGGAAGCTTTGTTGCTCTGGTGATGATGATGGTGGATTGGATCTTATGGGAATTTTGATGGCCATTGTTATAGCTCTCACCCTCATGCTCATCTGCCAGCCTCAACCGCGCCGAGTTTATGTTTTGCATCATTCACCTTTCTATTATGAAAATCATCTTTCATATTGTAATTTGTTGGTTAATCTCAATTTTCAAAAGAAACCAATTCTTAGATGCTGA

Coding sequence (CDS)

ATGGGGAAGCTTTGTTGCTCTGGTGATGATGATGGTGGATTGGATCTTATGGGAATTTTGATGGCCATTGTTATAGCTCTCACCCTCATGCTCATCTGCCAGCCTCAACCGCGCCGAGTTTATGTTTTGCATCATTCACCTTTCTATTATGAAAATCATCTTTCATATTGTAATTTGTTGGTTAATCTCAATTTTCAAAAGAAACCAATTCTTAGATGCTGA

Protein sequence

MGKLCCSGDDDGGLDLMGILMAIVIALTLMLICQPQPRRVYVLHHSPFYYENHLSYCNLLVNLNFQKKPILRC
Homology
[Close]
BLAST of Cla97C09G168970 vs. NCBI nr
Match: OMO98386.1 (hypothetical protein COLO4_13926 [Corchorus olitorius])

HSP 1 Score: 60.1 bits (144), Expect = 3.7e-06
Identity = 29/45 (64.44%), Postives = 34/45 (75.56%), Query Frame = 0 

Query: 1  MGKLCCSGDDDGGLDLMGILMAIVIALTLMLICQPQPR-RVYVLH 45
          MGKLCC   DDGGLDL GI+M ++IAL LM IC PQPR  VY ++
Sbjct: 1  MGKLCCMESDDGGLDLTGIIMVLIIALALMAICIPQPRPTVYAVY 45

[Close]
BLAST of Cla97C09G168970 vs. NCBI nr
Match: PRQ39073.1 (hypothetical protein RchiOBHm_Chr4g0421051 [Rosa chinensis])

HSP 1 Score: 55.8 bits (133), Expect = 6.9e-05
Identity = 27/40 (67.50%), Postives = 32/40 (80.00%), Query Frame = 0 

Query: 1  MGKLCCSGDDD-GGLDLMGILMAIVIALTLMLICQPQPRR 40
          MGKLCCSGDDD GGL+L  +L+ IVIAL +M +  PQPRR
Sbjct: 1  MGKLCCSGDDDEGGLNLTAVLVMIVIALVVMTVFSPQPRR 40

[Close]
BLAST of Cla97C09G168970 vs. TrEMBL
Match: tr|A0A1R3JU67|A0A1R3JU67_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_13926 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.4e-06
Identity = 29/45 (64.44%), Postives = 34/45 (75.56%), Query Frame = 0 

Query: 1  MGKLCCSGDDDGGLDLMGILMAIVIALTLMLICQPQPR-RVYVLH 45
          MGKLCC   DDGGLDL GI+M ++IAL LM IC PQPR  VY ++
Sbjct: 1  MGKLCCMESDDGGLDLTGIIMVLIIALALMAICIPQPRPTVYAVY 45

[Close]
BLAST of Cla97C09G168970 vs. TrEMBL
Match: tr|A0A2P6QY01|A0A2P6QY01_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0421051 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.6e-05
Identity = 27/40 (67.50%), Postives = 32/40 (80.00%), Query Frame = 0 

Query: 1  MGKLCCSGDDD-GGLDLMGILMAIVIALTLMLICQPQPRR 40
          MGKLCCSGDDD GGL+L  +L+ IVIAL +M +  PQPRR
Sbjct: 1  MGKLCCSGDDDEGGLNLTAVLVMIVIALVVMTVFSPQPRR 40

The following BLAST results are available for this feature:
BLAST of Cla97C09G168970 vs. NCBI nr
Match NameE-valueIdentityDescription
OMO98386.13.7e-0664.44hypothetical protein COLO4_13926 [Corchorus olitorius][more]
PRQ39073.16.9e-0567.50hypothetical protein RchiOBHm_Chr4g0421051 [Rosa chinensis][more]
BLAST of Cla97C09G168970 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1R3JU67|A0A1R3JU67_9ROSI2.4e-0664.44Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_13926 PE=4 SV=1[more]
tr|A0A2P6QY01|A0A2P6QY01_ROSCH4.6e-0567.50Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0421051 PE=4... [more]
BLAST of Cla97C09G168970 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C09G168970 vs. TAIR10
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C09G168970.1Cla97C09G168970.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C09G168970Watermelon (97103) v2wmbwmbB162
Cla97C09G168970Silver-seed gourdcarwmbB0117
Cla97C09G168970Silver-seed gourdcarwmbB0897
Cla97C09G168970Cucumber (Gy14) v2cgybwmbB543
Cla97C09G168970Cucumber (Gy14) v1cgywmbB640
Cla97C09G168970Cucurbita maxima (Rimu)cmawmbB386
Cla97C09G168970Cucurbita maxima (Rimu)cmawmbB940
Cla97C09G168970Cucurbita maxima (Rimu)cmawmbB945
Cla97C09G168970Cucurbita moschata (Rifu)cmowmbB369
Cla97C09G168970Cucurbita moschata (Rifu)cmowmbB916
Cla97C09G168970Cucurbita moschata (Rifu)cmowmbB921
Cla97C09G168970Wild cucumber (PI 183967)cpiwmbB598
Cla97C09G168970Cucumber (Chinese Long) v3cucwmbB594
Cla97C09G168970Cucumber (Chinese Long) v2cuwmbB572
Cla97C09G168970Bottle gourd (USVL1VR-Ls)lsiwmbB032
Cla97C09G168970Bottle gourd (USVL1VR-Ls)lsiwmbB212
Cla97C09G168970Melon (DHL92) v3.6.1medwmbB122
Cla97C09G168970Melon (DHL92) v3.6.1medwmbB208
Cla97C09G168970Melon (DHL92) v3.5.1mewmbB132
Cla97C09G168970Melon (DHL92) v3.5.1mewmbB223
Cla97C09G168970Watermelon (Charleston Gray)wcgwmbB035
Cla97C09G168970Watermelon (Charleston Gray)wcgwmbB282
Cla97C09G168970Watermelon (97103) v1wmwmbB041
Cla97C09G168970Watermelon (97103) v1wmwmbB419
Cla97C09G168970Wax gourdwgowmbB161