Cla97C09G168340 (gene) Watermelon (97103) v2

Overview
NameCla97C09G168340
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionVacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-related
LocationCla97Chr09 : 4826469 .. 4829127 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCCACGTATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAAAAGGCCGAGAAAGGTATGCCTTCAATTGTCTTCCCTTATCGCTTTTATACTAACCTTCTCCCTCCATCTTCCACATAATAACCGATGTGGGAATAAAGCTGCGCGCACACTGTACACCTAGTATTGTTTTTGCACATGTGAGGAGTTTTGCTTTTCTTTTTTTCTTCTTTGCAAGTATTAAATCACTGGTGCTTTGGCATAGAATTTAGTTGATGTTTAATAATATGATAAAAGTGCATAGTTCAATTTTTGGTCCATTTGGCTTTTTGATTTTGGCCTGATAGGTTCTATGCGAACCTTTTAGATAAATTAATGTTTGTTTGAATTGACTTGTATTTTTTTAAAAATTCATTTTTATTTAAACTCTTTTGATAAAAATGGTTTAAAATACACTCATTTATTTTGAGTGGTTGCCAAATACTTCAAATTTTTTCAAAATGACTTATTTTTTTAAATTAAACACTTGAAAATGTGATCCAAACACAACTTTAATCTCCCACCATATGTACTGTATAAACAACAAACTAATCAATTCTCTATCATAACAATTTAATTGTATAATTAGTTTCTATAAATAAGCCATTGTTATGTAGGTAAAATTTGCATATTTGACGCTTTAAATTTTGTGTAATATGCTTTAAGAATTTGATAGGTTTTCAAACTAATAGGAGGCAAAATATGGTATAGATTAGCAGTTCGTAACCCGACTCCAAAATTTAATGTGTGGTTCAAGAAGATAAATTATCCATCGTCCATGCAAGTATTTTCTAGGGTTATATATAGATTTTGATTTTTTTATTGTCAATGGTTTTTAAATTAAAAGATCGAGTTGAATCGAAAAAATCGATTTTCTTTAATAACAATTCAATATCATATTGAAAACCCGAACAAAATCACTATTTTCTTTTAGTACAACAATTATCAGGGTGGGGGATTGAACCTTTGCACTTTTAGGATAGAAGGTCATGTCAATTATCACTGAGTTAAAGCTCACTTTGGCAACAAAATCACTAAATTAACTTGGTTTAATTTAGTTTTTTGATTTCTTGTGCTCCTTGTTTGGTATAATAGAATTTAAAATCTTGTACGATTTGAAATTATGTTTTGATCACTAAAATTCGTATAAAATAGGTCGGTTAGTGTGATAGTGGTTGATTGGAACAGAGAGGTTCAGATGAAAATGAAAAATGTAGTTCATTGATTATAACCAAGATAAGAGCACAAAGAGAGAGAAAGTGAGTGAGTGAAAGGAAGGAGGATAAGGATTAAGGTTGCCTCATGCAAGGTCTAAAGTCCATAGGAAGGCCTAAATCTATGGGAAATTAAGAGGTGACATGAGGAAATATGCGTCCAAAAGGAAAAAGTTAGAACTTCAAATTTTAGGCCGATTCGCTATACTAGTAAGTATATTCCAATCAAGAAACAACCAAGGCATGTGCAAGTTGCTGCTCTATAGCATCAAGAACCACAATGACCTTAACATATCTAGATGTGGGAGTTACATGTAATCCTATATGTTAGAGAAAGAGTATTATGAACAATTTTATTCAACTAACTCTAAAAGAAGAAAAAGAGTAAGTAGTCTGAAGGTCGCCCTTGTTTTTGTACTGTACTCAACTAAACTATATACTCCTTATAACTTAGACAGACATTGGAGTGTGATAAGCTCGACATCATACTAATTCAAAGAGTACCGATAATCTCAATAAATGAAACTACTACCTCAAGTACCTTTTCTTTTCCCCTCATCCCAAACATAACTTAAAAACTTCAAATGATTTCTATTTCTTTGAGTTATTTCTATTTAAAATAATTTAATTTAAAACAAAGTTCCGCTTAAGAACATCCTTCTAAAGAGACTTTTTACTTCTTTTAAATGAACAAACTTTTTAAGTTCCGGAAGATAAACAAGTAAAGGAAAAAGAAATGTTAGTTGAACAATCGTTGTTAAATAAGGAATAATTGCACCAGAGATGGTGAAAAAGAAAACGTTCGAATACACATTTTTTTATGTTCTATTTTGTTTCTTTTACCTTCTTAGAAACATATAGAAGGAATTAGCTTTAGATCACAAATTCCATTGCAACTTCTTAGTTTTACAAGGTCTTTTTTCCACAAAATAAACAACATTTCTTCCTTTTTCATCCATCAGTCAATTAGAAATAAGCAAAGTTCCATCCCACCGCGTAATAGTGCACCCACACGTCTTCATCGAAGTTAAACGTTATTTTTTAACCAAAAGACTGAAAGCAACTATCGAGATTTTGGACTCTCTGGACACATACTTCGTACAAATCAAAAGTAACTCACAACATGAAATATTTAAGTTCTAAAATTTGAGGGGCGCGCCAAGGCCCATGCAGTAGTGCAACAAAAGGGCGACGCTCGAAGGCCCCAATGGCAAGCTATTGTGGTGGGCCTTCCCCCTAGAAAAATTAATTTAATATCATGTGGGCCGATGGCCCACGTATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAAAAGGCCGAGAAAGGTATGCTTTCTATTGCCTTCCACCACCGCTTTTATACTCACACTCTCCCTCCATCGTCAACGAAATAA

mRNA sequence

ATGGCCCACGTATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAAAAGGCCGAGAAAGGAGGCAAAATATGGTATAGATTAGCAGTTCGTAACCCGACTCCAAAATTTAATGTGTGGTTCAAGAAGATAAATTATCCATCGTCCATGCAAAAACATATAGAAGGAATTAGCTTTAGATCACAAATTCCATTGCAACTTCTTAGTTTTACAAGTCAATTAGAAATAAGCAAAGTTCCATCCCACCGCGTAATAGTGCACCCACACGTCTTCATCGAAGGGCGCGCCAAGGCCCATGCAGTAGTGCAACAAAAGGGCGACGCTCGAAGGCCCCAATGGCAAGCTATTGTGGTGGGCCTTCCCCCTAGAAAAATTAATTTAATATCATGTGGGCCGATGGCCCACGTATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAAAAGGCCGAGAAAGGTATGCTTTCTATTGCCTTCCACCACCGCTTTTATACTCACACTCTCCCTCCATCGTCAACGAAATAA

Coding sequence (CDS)

ATGGCCCACGTATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAAAAGGCCGAGAAAGGAGGCAAAATATGGTATAGATTAGCAGTTCGTAACCCGACTCCAAAATTTAATGTGTGGTTCAAGAAGATAAATTATCCATCGTCCATGCAAAAACATATAGAAGGAATTAGCTTTAGATCACAAATTCCATTGCAACTTCTTAGTTTTACAAGTCAATTAGAAATAAGCAAAGTTCCATCCCACCGCGTAATAGTGCACCCACACGTCTTCATCGAAGGGCGCGCCAAGGCCCATGCAGTAGTGCAACAAAAGGGCGACGCTCGAAGGCCCCAATGGCAAGCTATTGTGGTGGGCCTTCCCCCTAGAAAAATTAATTTAATATCATGTGGGCCGATGGCCCACGTATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAAAAGGCCGAGAAAGGTATGCTTTCTATTGCCTTCCACCACCGCTTTTATACTCACACTCTCCCTCCATCGTCAACGAAATAA

Protein sequence

MAHVSDIKLIRTDTTLDLSQKAEKGGKIWYRLAVRNPTPKFNVWFKKINYPSSMQKHIEGISFRSQIPLQLLSFTSQLEISKVPSHRVIVHPHVFIEGRAKAHAVVQQKGDARRPQWQAIVVGLPPRKINLISCGPMAHVSDIKLIRTDTTLDLSQKAEKGMLSIAFHHRFYTHTLPPSSTK
Homology
[Close]
BLAST of Cla97C09G168340 vs. NCBI nr
Match: EOY10677.1 (Vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-related [Theobroma cacao])

HSP 1 Score: 95.9 bits (237), Expect = 1.5e-16
Identity = 48/60 (80.00%), Postives = 53/60 (88.33%), Query Frame = 0 

Query: 101 KAHAVVQQKGDARRPQWQAIVVGLPPRKINLISCGPMAHVSDIKLIRTDTTLDLSQKAEK 160
           +A A+VQ+ GDAR PQ QA V+G P +KINLISCGPMAHVSDIKLIRTDTTLDLSQKAEK
Sbjct: 19  QARALVQRLGDAREPQQQATVMGPPLQKINLISCGPMAHVSDIKLIRTDTTLDLSQKAEK 78

[Close]
BLAST of Cla97C09G168340 vs. NCBI nr
Match: KJB31347.1 (hypothetical protein B456_005G187200, partial [Gossypium raimondii])

HSP 1 Score: 89.0 bits (219), Expect = 1.8e-14
Identity = 46/62 (74.19%), Postives = 48/62 (77.42%), Query Frame = 0 

Query: 118 QAIVVGLPPRKINLISCGPMAHVSDIKLIRTDTTLDLSQKAEKGMLSIAFHHRFYTHTLP 177
           QA VV  PP+KINLISCGPMAHVSDIKLIRTDTTLDLSQKAEKGML+      FY   L 
Sbjct: 1   QATVVDPPPQKINLISCGPMAHVSDIKLIRTDTTLDLSQKAEKGMLAAVQTRLFYKQLLA 60

Query: 178 PS 180
            S
Sbjct: 61  SS 62

[Close]
BLAST of Cla97C09G168340 vs. NCBI nr
Match: KJB06671.1 (hypothetical protein B456_001G025400, partial [Gossypium raimondii])

HSP 1 Score: 87.0 bits (214), Expect = 7.0e-14
Identity = 46/62 (74.19%), Postives = 47/62 (75.81%), Query Frame = 0 

Query: 118 QAIVVGLPPRKINLISCGPMAHVSDIKLIRTDTTLDLSQKAEKGMLSIAFHHRFYTHTLP 177
           QA VV  PP+KINLISC PMAHVSDIKLIRTDTTLDLSQKAEKGML       FY   LP
Sbjct: 1   QATVVDPPPQKINLISCEPMAHVSDIKLIRTDTTLDLSQKAEKGMLCFVEARFFYRLLLP 60

Query: 178 PS 180
            S
Sbjct: 61  SS 62

[Close]
BLAST of Cla97C09G168340 vs. NCBI nr
Match: KJB44675.1 (hypothetical protein B456_007G264800 [Gossypium raimondii])

HSP 1 Score: 87.0 bits (214), Expect = 7.0e-14
Identity = 43/55 (78.18%), Postives = 46/55 (83.64%), Query Frame = 0 

Query: 118 QAIVVGLPPRKINLISCGPMAHVSDIKLIRTDTTLDLSQKAEKGMLSIAFHHRFY 173
           QA VV  PP+KINLISCGP+AHVSDIKLIRTDTTLDLSQKAEKGML  +    FY
Sbjct: 10  QATVVSFPPKKINLISCGPLAHVSDIKLIRTDTTLDLSQKAEKGMLVPSQARSFY 64

[Close]
BLAST of Cla97C09G168340 vs. NCBI nr
Match: KJB06664.1 (hypothetical protein B456_001G025100, partial [Gossypium raimondii])

HSP 1 Score: 83.6 bits (205), Expect = 7.7e-13
Identity = 44/62 (70.97%), Postives = 46/62 (74.19%), Query Frame = 0 

Query: 118 QAIVVGLPPRKINLISCGPMAHVSDIKLIRTDTTLDLSQKAEKGMLSIAFHHRFYTHTLP 177
           QA  +  PP+KINLISC PMAHVSDIKLIRTDTTLDLSQKAEKGML       FY   LP
Sbjct: 1   QATAMDPPPQKINLISCEPMAHVSDIKLIRTDTTLDLSQKAEKGMLEDVQARFFYRLLLP 60

Query: 178 PS 180
            S
Sbjct: 61  SS 62

[Close]
BLAST of Cla97C09G168340 vs. TrEMBL
Match: tr|A0A061F208|A0A061F208_THECC (Vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-related OS=Theobroma cacao OX=3641 GN=TCM_025977 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.0e-16
Identity = 48/60 (80.00%), Postives = 53/60 (88.33%), Query Frame = 0 

Query: 101 KAHAVVQQKGDARRPQWQAIVVGLPPRKINLISCGPMAHVSDIKLIRTDTTLDLSQKAEK 160
           +A A+VQ+ GDAR PQ QA V+G P +KINLISCGPMAHVSDIKLIRTDTTLDLSQKAEK
Sbjct: 19  QARALVQRLGDAREPQQQATVMGPPLQKINLISCGPMAHVSDIKLIRTDTTLDLSQKAEK 78

[Close]
BLAST of Cla97C09G168340 vs. TrEMBL
Match: tr|A0A0D2NF40|A0A0D2NF40_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii OX=29730 GN=B456_005G187200 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.2e-14
Identity = 46/62 (74.19%), Postives = 48/62 (77.42%), Query Frame = 0 

Query: 118 QAIVVGLPPRKINLISCGPMAHVSDIKLIRTDTTLDLSQKAEKGMLSIAFHHRFYTHTLP 177
           QA VV  PP+KINLISCGPMAHVSDIKLIRTDTTLDLSQKAEKGML+      FY   L 
Sbjct: 1   QATVVDPPPQKINLISCGPMAHVSDIKLIRTDTTLDLSQKAEKGMLAAVQTRLFYKQLLA 60

Query: 178 PS 180
            S
Sbjct: 61  SS 62

[Close]
BLAST of Cla97C09G168340 vs. TrEMBL
Match: tr|A0A0D2TM16|A0A0D2TM16_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_007G264800 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 4.6e-14
Identity = 43/55 (78.18%), Postives = 46/55 (83.64%), Query Frame = 0 

Query: 118 QAIVVGLPPRKINLISCGPMAHVSDIKLIRTDTTLDLSQKAEKGMLSIAFHHRFY 173
           QA VV  PP+KINLISCGP+AHVSDIKLIRTDTTLDLSQKAEKGML  +    FY
Sbjct: 10  QATVVSFPPKKINLISCGPLAHVSDIKLIRTDTTLDLSQKAEKGMLVPSQARSFY 64

[Close]
BLAST of Cla97C09G168340 vs. TrEMBL
Match: tr|A0A0D2PRR5|A0A0D2PRR5_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii OX=29730 GN=B456_001G025400 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 4.6e-14
Identity = 46/62 (74.19%), Postives = 47/62 (75.81%), Query Frame = 0 

Query: 118 QAIVVGLPPRKINLISCGPMAHVSDIKLIRTDTTLDLSQKAEKGMLSIAFHHRFYTHTLP 177
           QA VV  PP+KINLISC PMAHVSDIKLIRTDTTLDLSQKAEKGML       FY   LP
Sbjct: 1   QATVVDPPPQKINLISCEPMAHVSDIKLIRTDTTLDLSQKAEKGMLCFVEARFFYRLLLP 60

Query: 178 PS 180
            S
Sbjct: 61  SS 62

[Close]
BLAST of Cla97C09G168340 vs. TrEMBL
Match: tr|A0A0D2W558|A0A0D2W558_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii OX=29730 GN=B456_013G117300 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 5.1e-13
Identity = 42/53 (79.25%), Postives = 44/53 (83.02%), Query Frame = 0 

Query: 125 PPRKINLISCGPMAHVSDIKLIRTDTTLDLSQKAEKGMLSIAFHHRFYTHTLP 178
           PP+KINLISCGPMAHVSDIKLIRTDTTLDLSQKAEKGML I     FY+   P
Sbjct: 7   PPQKINLISCGPMAHVSDIKLIRTDTTLDLSQKAEKGMLCIVQAGFFYSCCSP 59

[Close]
BLAST of Cla97C09G168340 vs. TAIR10
Match: AT3G57770.1 (Protein kinase superfamily protein)

HSP 1 Score: 54.7 bits (130), Expect = 7.0e-08
Identity = 25/27 (92.59%), Postives = 27/27 (100.00%), Query Frame = 0 

Query: 137 MAHVSDIKLIRTDTTLDLSQKAEKGML 164
           MAH+SDIKLIRTDTTLDLSQKAEKGM+
Sbjct: 1   MAHISDIKLIRTDTTLDLSQKAEKGMI 27

[Close]
BLAST of Cla97C09G168340 vs. TAIR10
Match: AT1G16820.1 (vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-related)

HSP 1 Score: 53.9 bits (128), Expect = 1.2e-07
Identity = 25/26 (96.15%), Postives = 26/26 (100.00%), Query Frame = 0 

Query: 137 MAHVSDIKLIRTDTTLDLSQKAEKGM 163
           MAH+SDIKLIRTDTTLDLSQKAEKGM
Sbjct: 1   MAHISDIKLIRTDTTLDLSQKAEKGM 26

The following BLAST results are available for this feature:
BLAST of Cla97C09G168340 vs. NCBI nr
Match NameE-valueIdentityDescription
EOY10677.11.5e-1680.00Vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar pr... [more]
KJB31347.11.8e-1474.19hypothetical protein B456_005G187200, partial [Gossypium raimondii][more]
KJB06671.17.0e-1474.19hypothetical protein B456_001G025400, partial [Gossypium raimondii][more]
KJB44675.17.0e-1478.18hypothetical protein B456_007G264800 [Gossypium raimondii][more]
KJB06664.17.7e-1370.97hypothetical protein B456_001G025100, partial [Gossypium raimondii][more]
BLAST of Cla97C09G168340 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A061F208|A0A061F208_THECC1.0e-1680.00Vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar pr... [more]
tr|A0A0D2NF40|A0A0D2NF40_GOSRA1.2e-1474.19Uncharacterized protein (Fragment) OS=Gossypium raimondii OX=29730 GN=B456_005G1... [more]
tr|A0A0D2TM16|A0A0D2TM16_GOSRA4.6e-1478.18Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_007G264800 PE=4 ... [more]
tr|A0A0D2PRR5|A0A0D2PRR5_GOSRA4.6e-1474.19Uncharacterized protein (Fragment) OS=Gossypium raimondii OX=29730 GN=B456_001G0... [more]
tr|A0A0D2W558|A0A0D2W558_GOSRA5.1e-1379.25Uncharacterized protein (Fragment) OS=Gossypium raimondii OX=29730 GN=B456_013G1... [more]
BLAST of Cla97C09G168340 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C09G168340 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G57770.17.0e-0892.59Protein kinase superfamily protein[more]
AT1G16820.11.2e-0796.15vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar pr... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C09G168340.1Cla97C09G168340.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34892FAMILY NOT NAMEDcoord: 137..176
coord: 1..28

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C09G168340Watermelon (97103) v2wmbwmbB155
Cla97C09G168340Silver-seed gourdcarwmbB0117
Cla97C09G168340Silver-seed gourdcarwmbB0590
Cla97C09G168340Cucumber (Gy14) v2cgybwmbB543
Cla97C09G168340Cucumber (Gy14) v1cgywmbB383
Cla97C09G168340Cucurbita maxima (Rimu)cmawmbB386
Cla97C09G168340Cucurbita maxima (Rimu)cmawmbB940
Cla97C09G168340Cucurbita moschata (Rifu)cmowmbB369
Cla97C09G168340Cucurbita moschata (Rifu)cmowmbB916
Cla97C09G168340Wild cucumber (PI 183967)cpiwmbB598
Cla97C09G168340Cucumber (Chinese Long) v3cucwmbB594
Cla97C09G168340Cucumber (Chinese Long) v2cuwmbB572
Cla97C09G168340Bottle gourd (USVL1VR-Ls)lsiwmbB212
Cla97C09G168340Melon (DHL92) v3.6.1medwmbB194
Cla97C09G168340Melon (DHL92) v3.5.1mewmbB209
Cla97C09G168340Watermelon (Charleston Gray)wcgwmbB035
Cla97C09G168340Watermelon (97103) v1wmwmbB041
Cla97C09G168340Wax gourdwgowmbB234
Cla97C09G168340Wax gourdwgowmbB615