Cla97C09G166260 (gene) Watermelon (97103) v2

Overview
NameCla97C09G166260
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionUnknown protein
LocationCla97Chr09 : 3379689 .. 3380641 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGCAAGAGAGGTTATTTTCGATTACCTGAGGCATTTCAATACTTGGGATCCTGAAACTTCTCCCTTAGTTTTCATTTTTATGTTCTGTATCTGTGCCCTTATATTTCTTACAAACACTTTTCATGTACTTGTCTTATCTTATTTGAAGCAGATATGTATCGATCTTTTTCAACAGATGATACACCCGAACGCTCGGCCTCAAAGCTTCAACATTTTGCTGCACTGCTGTCTACGATCAAGATCAAGAGGTCTGAAATTGTATCATATTGTTGTCATCTTTACAAAGTATAAGCTTAATGCTACAATTTAAAAGTAGTTCCATTAGGAAAGTTGTGGGTTAGTCTACAAGTTGGTCTTTCAATTTTAAGCGTTCATTATTGACTTCTAGAAATAGGGTGACAATTTGTCCATACTGATGACAATAGGCACAGGAAAAAACATATATATACACACACAGTTGCGTAGATTTTCCCCACCATGCAGCTTCAATTATTGCAACAAAACCAACTTCACACGTCATTTTCTTTATAGGGACAAGAGAACCCTGTTTTGGTCAAACAAAACCAACTTTAATTATTTTTCCTCTTTTGATCTTTTGAGTATATAATTGTTACTGGATTGACCCATGAATAGATATGGATTGTAACAAGCAATTATTCTAAGCCTATGAGTATGCTGGAAATTGCTAGATATTATTGCAGAAAATGAAATTGAAAAATCTCATTAAAACAGTTGTAGCATGGGGTCGTCTTGCAAACTTTGAAAGTTCATCGTGCAACCAGAAGTCTGGTGAAGCACTTCTTAAACTATGAGTGAATGATTCACTTTAGGGTTGTCATTTATGTTCAACTTTCAACTCATTCAGGTATGTTAATTCACATCGTGCAACCGGAAGTCTGGTGAAGCACTTCGTCGTCGTCGAAGCGATACACGATGAAAGATTGACTTAA

mRNA sequence

ATGCGCAAGAGAGATATGTATCGATCTTTTTCAACAGATGATACACCCGAACGCTCGGCCTCAAAGCTTCAACATTTTGCTGCACTGCTGTCTACGATCAAGATCAAGAGGTATGTTAATTCACATCGTGCAACCGGAAGTCTGGTGAAGCACTTCGTCGTCGTCGAAGCGATACACGATGAAAGATTGACTTAA

Coding sequence (CDS)

ATGCGCAAGAGAGATATGTATCGATCTTTTTCAACAGATGATACACCCGAACGCTCGGCCTCAAAGCTTCAACATTTTGCTGCACTGCTGTCTACGATCAAGATCAAGAGGTATGTTAATTCACATCGTGCAACCGGAAGTCTGGTGAAGCACTTCGTCGTCGTCGAAGCGATACACGATGAAAGATTGACTTAA

Protein sequence

MRKRDMYRSFSTDDTPERSASKLQHFAALLSTIKIKRYVNSHRATGSLVKHFVVVEAIHDERLT
Homology
[Close]
BLAST of Cla97C09G166260 vs. NCBI nr
Match: KGN45113.1 (hypothetical protein Csa_7G426540 [Cucumis sativus])

HSP 1 Score: 52.8 bits (125), Expect = 5.1e-04
Identity = 25/33 (75.76%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 5  DMYRSFSTDDTPERSASKLQHFAALLSTIKIKR 38
          DMY+SF T+D+PE SASKL+HFAA+LST+KIKR
Sbjct: 39 DMYQSFVTEDSPECSASKLRHFAAVLSTMKIKR 71

[Close]
BLAST of Cla97C09G166260 vs. TrEMBL
Match: tr|A0A0A0K6J2|A0A0A0K6J2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G426540 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.4e-04
Identity = 25/33 (75.76%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 5  DMYRSFSTDDTPERSASKLQHFAALLSTIKIKR 38
          DMY+SF T+D+PE SASKL+HFAA+LST+KIKR
Sbjct: 39 DMYQSFVTEDSPECSASKLRHFAAVLSTMKIKR 71

The following BLAST results are available for this feature:
BLAST of Cla97C09G166260 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN45113.15.1e-0475.76hypothetical protein Csa_7G426540 [Cucumis sativus][more]
BLAST of Cla97C09G166260 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K6J2|A0A0A0K6J2_CUCSA3.4e-0475.76Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G426540 PE=4 SV=1[more]
BLAST of Cla97C09G166260 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C09G166260 vs. TAIR10
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C09G166260.1Cla97C09G166260.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C09G166260Silver-seed gourdcarwmbB0370
Cla97C09G166260Silver-seed gourdcarwmbB0371
Cla97C09G166260Silver-seed gourdcarwmbB0473
Cla97C09G166260Silver-seed gourdcarwmbB0475
Cla97C09G166260Cucumber (Gy14) v2cgybwmbB532
Cla97C09G166260Cucumber (Gy14) v1cgywmbB207
Cla97C09G166260Cucurbita maxima (Rimu)cmawmbB387
Cla97C09G166260Cucurbita maxima (Rimu)cmawmbB391
Cla97C09G166260Cucurbita maxima (Rimu)cmawmbB509
Cla97C09G166260Cucurbita maxima (Rimu)cmawmbB934
Cla97C09G166260Cucurbita moschata (Rifu)cmowmbB370
Cla97C09G166260Cucurbita moschata (Rifu)cmowmbB374
Cla97C09G166260Cucurbita moschata (Rifu)cmowmbB492
Cla97C09G166260Cucurbita moschata (Rifu)cmowmbB911
Cla97C09G166260Wild cucumber (PI 183967)cpiwmbB268
Cla97C09G166260Wild cucumber (PI 183967)cpiwmbB587
Cla97C09G166260Cucumber (Chinese Long) v3cucwmbB264
Cla97C09G166260Cucumber (Chinese Long) v3cucwmbB584
Cla97C09G166260Cucumber (Chinese Long) v2cuwmbB561
Cla97C09G166260Bottle gourd (USVL1VR-Ls)lsiwmbB209
Cla97C09G166260Melon (DHL92) v3.6.1medwmbB195
Cla97C09G166260Melon (DHL92) v3.5.1mewmbB211
Cla97C09G166260Watermelon (Charleston Gray)wcgwmbB035
Cla97C09G166260Watermelon (97103) v1wmwmbB041
Cla97C09G166260Wax gourdwgowmbB616