Cla97C09G162160 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C09G162160
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	DNA-directed RNA polymerase III subunit RPC7-like isoform X1
Location	Cla97Chr09 : 230951 .. 233815 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATTTAGAGGGCGAGGACGAGGACGAGGTGGCGGCGGTGGGGCCTTTCAGTATGCCAAGCAAGAACCCTTTGAGCTTTTTCCAGAGGTGGGTAGTTCTGTAAGCTAGAAAAGTCCTAACTTCCACTTAGTTTGCCGTGGTGGACTGATAGCATATGCCAACAACCTTCACTGTTACTCGATTGAGTTCAAATTAGCACATCTTTGTTAATAATACGTGTGTTATTGCACCTATGTTTGCTGAATCTTGAGTGACTGTGAGACTTAACATTTGAGTCAAGTTTAGATTGTTTGAAAGATGAACTAAGGCTGTTGGTTATTGATGAAATCTATAGTACGTTATTTTCGTGTTTGTAGGGATCCCATTTTTCCTTCGCTCTTGGAACTTTCAACTTTTTATTTTTTTATTTTTTTATTTTTTTATTTTTTATTTTTTTGTTAACTATGACCTTAAAAGTATGGTTTCTTCTTTCTCCTTGCAAGACATTTCCCGAGCAAAAGACCATATATAGTTTGACATTTTTAACCTATGACCTTAAAAGTATTTGAGTTGGCAGCTTCTCCCGTAAAGATTTTTGTTCTCACATGGATAAGTAGGATGGTTTTTTAAAAACAAAAAAAGAAAAACAATTTTGGTTTTTCTTATTTTTATATAAGCATATATTTTCAGGTGTCTTCTTTCATGCACTTTGCTTTCAAATCATTTGTGCTAAGCCTTAAGTATCTTATATTTTGATATCCATCACTCAAACTGTAGAGTTTTTAGTCGATGAAAGCACATGCTCTAGCAGAGCTAATAGTTTAGGCAGCCACATTTCTCTATCTACTTCTTAATGGGAAATGTTAGTTCGAAGATAATTGCATCGAATTTTAGTACATTTACTTGCGGGCTTACCGGTTTATTTTCTTTCCTAAGGAGATATTTTCTGGCACAATTACAGAATGTAACTCTACCGAGCGTCAGTGATATGCCTGAAGAAAGAAGCTTGGCTTTACGTAACAACAAATTTCTGAATTATTGGAAGGCCTCTCCTTTTTATCTAGAGGAAAATGTTATGAAAAGTTAGTGTTCCTTATAACTCTTCTTCTTCTTCTTCTCTCTCTCCCTCCCAAAGCAATGCTATTTTGTTGCAAAAAAAATTGGTAATTTTGTACACTGCTTGGATTATTGTACCAGAGGTGCAAAGAACTGAGATAGAGAAATTTTCCGATAGATCTAAGTCGAATAGTACGTTGAAGCGTGATTCCCTTGCACAAATTCTACAGCTCACATCCAGGAACTTTCCTGAAGAATTGGTTGAAGGTATGCAATCTTTGATCTCTCAGAGAGGGATGAGAGTTATTCTAAGATTATCTGTCTGTTTACCGCAATCCTTTCTTTCTGGGGCCACCTATGTATACAGATACTCTACTGTTAAATTTTCAGGTTTCAAAGGGAAGTTGCAGACCAAAAGAAAAGTTCAATGGAATCCCGGCTCAGGTTTGTTGGGACAATAAGAATTTCTCCCCTGAACCAATTCAGTGTTGATGCCATTTCTGTTAGTCACCTGTTGATGTATCTTGGTGGTGGTATGTGTCTCATTACAGGGCTGCAAAAATTGGACTTCCTGGAGAAGCGTGAAGAATCTCTCAAGGCAAGACGTTTTCCACCTCAATATCTCTCACTCCTTTCGTAACTCTTAGTCACTTAAATCTTTTCTTCTTTTGATTCTCATTGCAGCTTATGATTAGAAATTTTTATACATACTCCTGTGCTGATTCTTTTCTTTCTTGACTTTATTAGGGACAGGATAAGGATGATAAGGAGAAGAAAGAAGGAGAAGAAGGTGAAGATGAAGATGAAGACGAAGACGATGCACAGTCCGAGGAACTTACTGATGATGATTATTATCAGGTTTTGACCAGAACTGTTGGATTTCGTTATATGCTTAATTTAAATATGAGTCTTCATCAGACTTTTTGTATGATCGTATGTCTATGTTTCCTTTTTCATACCTTTTGACTTCTCTAAACTTAATGTTCCCTTTTAATTTTTAATTTTTTTTAATACAACCCATATGTACTGAATGATAAAAGATAAACAAACTATGGGATAAACCAAGTGTGCGAGGGCCCTAGTTAGAGATATAGCAGGATTATAAGTAGAATATTAGTGTTGTTATTAGAAGGGGCTTATTGGCAAATAGCTAATAAGTTTGTTAGGGGTTTTAGTTATAAATAGAGGGGGTGGGGTTGGGAGGAAAGTATGAAGAATTTTGTGGGATTTTGTTTGGGGAATTTGAGAGAGAATAGGCCTTTTCGAAAGACTATGTTATATTGTAACTTATTTGGATATTGCAATATATCTTTTAGTGTTCTTGTTATGAGGTATCCTAACAGTGAGGTACTTGGACCCCCTCTCCTAAGAATTTTTTTAGCCCTAAATCACTCACTAAAATATTCTCCCTTCCTCATTCTCCACTCCCTCAATTAATTATAACCAGTATCCTAACAACTTTCATCACTATTTACTAATATATCCTCAATAACAAGCCTACCAATTTTCTCCTATTAACATCATTGAGCTGCAGAATGAATACTTCGACGACGATGAAGATGATTACAACATGGAAGAAGAAGGTGGAGGTATGGTTTTTTACTCTAATGGACTGATTAATATTGTAAGAATTTGAGTTTAGAACTTCAAAACTTATTATTATTTTGTTCTTTGAACGTTGAAATAAGTTCAGGTTGGTTTTCAAGTTAAATTACTGTAAATTGGAAATTGTTAATCATTATGCTAGATAAAGTTTTTCTTTTTTTTCCTCAATACAAATGTTTATGTATATAGTTTAATATTGTTGCAGATGAACCAGAATATTAG

mRNA sequence

ATGGCATTTAGAGGGCGAGGACGAGGACGAGGTGGCGGCGGTGGGGCCTTTCAGTATGCCAAGCAAGAACCCTTTGAGCTTTTTCCAGAGAATGTAACTCTACCGAGCGTCAGTGATATGCCTGAAGAAAGAAGCTTGGCTTTACGTAACAACAAATTTCTGAATTATTGGAAGGCCTCTCCTTTTTATCTAGAGGAAAATGTTATGAAAAAGGTGCAAAGAACTGAGATAGAGAAATTTTCCGATAGATCTAAGTCGAATAGTACGTTGAAGCGTGATTCCCTTGCACAAATTCTACAGCTCACATCCAGGAACTTTCCTGAAGAATTGGTTGAAGGTTTCAAAGGGAAGTTGCAGACCAAAAGAAAAGTTCAATGGAATCCCGGCTCAGGGCTGCAAAAATTGGACTTCCTGGAGAAGCGTGAAGAATCTCTCAAGGGACAGGATAAGGATGATAAGGAGAAGAAAGAAGGAGAAGAAGGTGAAGATGAAGATGAAGACGAAGACGATGCACAGTCCGAGGAACTTACTGATGATGATTATTATCAGAATGAATACTTCGACGACGATGAAGATGATTACAACATGGAAGAAGAAGGTGGAGATGAACCAGAATATTAG

Coding sequence (CDS)

ATGGCATTTAGAGGGCGAGGACGAGGACGAGGTGGCGGCGGTGGGGCCTTTCAGTATGCCAAGCAAGAACCCTTTGAGCTTTTTCCAGAGAATGTAACTCTACCGAGCGTCAGTGATATGCCTGAAGAAAGAAGCTTGGCTTTACGTAACAACAAATTTCTGAATTATTGGAAGGCCTCTCCTTTTTATCTAGAGGAAAATGTTATGAAAAAGGTGCAAAGAACTGAGATAGAGAAATTTTCCGATAGATCTAAGTCGAATAGTACGTTGAAGCGTGATTCCCTTGCACAAATTCTACAGCTCACATCCAGGAACTTTCCTGAAGAATTGGTTGAAGGTTTCAAAGGGAAGTTGCAGACCAAAAGAAAAGTTCAATGGAATCCCGGCTCAGGGCTGCAAAAATTGGACTTCCTGGAGAAGCGTGAAGAATCTCTCAAGGGACAGGATAAGGATGATAAGGAGAAGAAAGAAGGAGAAGAAGGTGAAGATGAAGATGAAGACGAAGACGATGCACAGTCCGAGGAACTTACTGATGATGATTATTATCAGAATGAATACTTCGACGACGATGAAGATGATTACAACATGGAAGAAGAAGGTGGAGATGAACCAGAATATTAG

Protein sequence

MAFRGRGRGRGGGGGAFQYAKQEPFELFPENVTLPSVSDMPEERSLALRNNKFLNYWKASPFYLEENVMKKVQRTEIEKFSDRSKSNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLQTKRKVQWNPGSGLQKLDFLEKREESLKGQDKDDKEKKEGEEGEDEDEDEDDAQSEELTDDDYYQNEYFDDDEDDYNMEEEGGDEPEY

Homology

[Close]

BLAST of Cla97C09G162160 vs. NCBI nr
Match: XP_008462407.1 (PREDICTED: DNA-directed RNA polymerase III subunit RPC7-like isoform X1 [Cucumis melo] >XP_008462408.1 PREDICTED: DNA-directed RNA polymerase III subunit RPC7-like isoform X1 [Cucumis melo])

HSP 1 Score: 231.9 bits (590), Expect = 2.0e-57
Identity = 130/148 (87.84%), Postives = 138/148 (93.24%), Query Frame = 0


Query: 1   MAFRGXXXXXXXXXXXXQYAKQEPFELFPENVTLPSVSDMPEERSLALRNNKFLNYWKAS 60
           MAFRGXXXXXXXXXXXX YAKQEPFELFPENVTLPSVS+MPEE +LA+    FL YWKAS
Sbjct: 1   MAFRGXXXXXXXXXXXXXYAKQEPFELFPENVTLPSVSEMPEELALAMGQINFLKYWKAS 60

Query: 61  PFYLEENVMKKVQRTEIEKFSDRSKSNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLQT 120
           PFYLEENVMKK+QRTEIEKFSDR K NSTLKRDSLAQI+QLTSRNFPEELVEGFKGKL+T
Sbjct: 61  PFYLEENVMKKMQRTEIEKFSDRLKMNSTLKRDSLAQIIQLTSRNFPEELVEGFKGKLRT 120

Query: 121 KRKVQWNPGSGLQKLDFLEKREESLKGQ 149
           KRKVQWNP SGL+K+DFLEKREESLKGQ
Sbjct: 121 KRKVQWNPESGLKKMDFLEKREESLKGQ 148

[Close]

BLAST of Cla97C09G162160 vs. NCBI nr
Match: XP_022154143.1 (ribosomal L1 domain-containing protein CG13096-like [Momordica charantia] >XP_022154151.1 ribosomal L1 domain-containing protein CG13096-like [Momordica charantia] >XP_022154160.1 ribosomal L1 domain-containing protein CG13096-like [Momordica charantia] >XP_022154168.1 ribosomal L1 domain-containing protein CG13096-like [Momordica charantia])

HSP 1 Score: 231.9 bits (590), Expect = 2.0e-57
Identity = 130/148 (87.84%), Postives = 139/148 (93.92%), Query Frame = 0


Query: 1   MAFR-GXXXXXXXXXXXXQYAKQEPFELFPENVTLPSVSDMPEERSLALRNNKFLNYWKA 60
           MAFR G XXXXXXXXXXXQYAKQEPFELFPENVTLPSVSD+PEE+ L + N++ LNYWKA
Sbjct: 1   MAFRGGRXXXXXXXXXXXQYAKQEPFELFPENVTLPSVSDVPEEKGLVICNSRLLNYWKA 60

Query: 61  SPFYLEENVMKKVQRTEIEKFSDRSKSNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLQ 120
           SPF+LEENV+KK+QRTEIEKFSDRSK NSTLKRDSLAQILQLTSRNFPEELVEGFKGKL+
Sbjct: 61  SPFFLEENVLKKMQRTEIEKFSDRSKLNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLR 120

Query: 121 TKRKVQWNPGSGLQKLDFLEKREESLKG 148
            KRKVQWNP SGLQKLDFLEKREESLKG
Sbjct: 121 NKRKVQWNPESGLQKLDFLEKREESLKG 148

[Close]

BLAST of Cla97C09G162160 vs. NCBI nr
Match: XP_023548752.1 (DNA-directed RNA polymerase III subunit rpc31-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 229.6 bits (584), Expect = 9.9e-57
Identity = 128/149 (85.91%), Postives = 140/149 (93.96%), Query Frame = 0


Query: 1   MAFRGXXXXXXXXXXXXQYAKQEPFELFPENVTLPSVSDMPEERSLALRNNKFLNYWKAS 60
           MAFRG XXXXXXXXXXX YAKQEPFELFPENVTLP+VSD+PE + L + N++ LNYWKAS
Sbjct: 1   MAFRG-XXXXXXXXXXXXYAKQEPFELFPENVTLPNVSDIPEAKGLVICNSRLLNYWKAS 60

Query: 61  PFYLEENVMKKVQRTEIEKFSDRSKSNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLQT 120
           PFYLEENVMKK+QRTEIE+FSDR+KSNSTLKRDSLAQILQLTSRNFPEELVEGFKGKL++
Sbjct: 61  PFYLEENVMKKMQRTEIERFSDRTKSNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLRS 120

Query: 121 KRKVQWNPGSGLQKLDFLEKREESLKGQD 150
           KRKVQWNP SGL KLDFLEKREESLKGQ+
Sbjct: 121 KRKVQWNPESGLTKLDFLEKREESLKGQN 148

[Close]

BLAST of Cla97C09G162160 vs. NCBI nr
Match: XP_022953194.1 (glutamic acid-rich protein-like [Cucurbita moschata])

HSP 1 Score: 228.4 bits (581), Expect = 2.2e-56
Identity = 127/149 (85.23%), Postives = 140/149 (93.96%), Query Frame = 0


Query: 1   MAFRGXXXXXXXXXXXXQYAKQEPFELFPENVTLPSVSDMPEERSLALRNNKFLNYWKAS 60
           MAFRG XXXXXXXXXXX YAKQEPFELFPENVTLP+VSD+PE + L + N++ LNYWKAS
Sbjct: 1   MAFRG-XXXXXXXXXXXXYAKQEPFELFPENVTLPNVSDIPEAKGLVICNSRLLNYWKAS 60

Query: 61  PFYLEENVMKKVQRTEIEKFSDRSKSNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLQT 120
           PFYLEENVMKK+Q+TEIE+FSDR+KSNSTLKRDSLAQILQLTSRNFPEELVEGFKGKL++
Sbjct: 61  PFYLEENVMKKMQKTEIERFSDRTKSNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLRS 120

Query: 121 KRKVQWNPGSGLQKLDFLEKREESLKGQD 150
           KRKVQWNP SGL KLDFLEKREESLKGQ+
Sbjct: 121 KRKVQWNPESGLTKLDFLEKREESLKGQN 148

[Close]

BLAST of Cla97C09G162160 vs. NCBI nr
Match: XP_022992400.1 (DNA-directed RNA polymerase III subunit rpc31-like [Cucurbita maxima])

HSP 1 Score: 226.1 bits (575), Expect = 1.1e-55
Identity = 126/149 (84.56%), Postives = 139/149 (93.29%), Query Frame = 0


Query: 1   MAFRGXXXXXXXXXXXXQYAKQEPFELFPENVTLPSVSDMPEERSLALRNNKFLNYWKAS 60
           MAFRG XXXXXXXXXXX YAKQEPFELFPENVTLP+VSD+PE + L + N++ LNYWKAS
Sbjct: 1   MAFRG-XXXXXXXXXXXXYAKQEPFELFPENVTLPNVSDIPEAKGLVICNSRLLNYWKAS 60

Query: 61  PFYLEENVMKKVQRTEIEKFSDRSKSNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLQT 120
           PFYLEENVMKK+Q+ EIE+FSDR+KSNSTLKRDSLAQILQLTSRNFPEELVEGFKGKL++
Sbjct: 61  PFYLEENVMKKMQKIEIERFSDRAKSNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLRS 120

Query: 121 KRKVQWNPGSGLQKLDFLEKREESLKGQD 150
           KRKVQWNP SGL KLDFLEKREESLKGQ+
Sbjct: 121 KRKVQWNPESGLTKLDFLEKREESLKGQN 148

[Close]

BLAST of Cla97C09G162160 vs. TrEMBL
Match: tr|A0A1S3CGV4|A0A1S3CGV4_CUCME (DNA-directed RNA polymerase III subunit RPC7-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500773 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.3e-57
Identity = 130/148 (87.84%), Postives = 138/148 (93.24%), Query Frame = 0


Query: 1   MAFRGXXXXXXXXXXXXQYAKQEPFELFPENVTLPSVSDMPEERSLALRNNKFLNYWKAS 60
           MAFRGXXXXXXXXXXXX YAKQEPFELFPENVTLPSVS+MPEE +LA+    FL YWKAS
Sbjct: 1   MAFRGXXXXXXXXXXXXXYAKQEPFELFPENVTLPSVSEMPEELALAMGQINFLKYWKAS 60

Query: 61  PFYLEENVMKKVQRTEIEKFSDRSKSNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLQT 120
           PFYLEENVMKK+QRTEIEKFSDR K NSTLKRDSLAQI+QLTSRNFPEELVEGFKGKL+T
Sbjct: 61  PFYLEENVMKKMQRTEIEKFSDRLKMNSTLKRDSLAQIIQLTSRNFPEELVEGFKGKLRT 120

Query: 121 KRKVQWNPGSGLQKLDFLEKREESLKGQ 149
           KRKVQWNP SGL+K+DFLEKREESLKGQ
Sbjct: 121 KRKVQWNPESGLKKMDFLEKREESLKGQ 148

[Close]

BLAST of Cla97C09G162160 vs. TrEMBL
Match: tr|A0A0A0KCT3|A0A0A0KCT3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G452310 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.2e-55
Identity = 124/148 (83.78%), Postives = 137/148 (92.57%), Query Frame = 0


Query: 1   MAFRGXXXXXXXXXXXXQYAKQEPFELFPENVTLPSVSDMPEERSLALRNNKFLNYWKAS 60
           MAFRG  XXXXXXXXXXQYAKQEPFELFPENVTLPS+ +MPEE +LA+ +  F+ YWKAS
Sbjct: 162 MAFRG--XXXXXXXXXXQYAKQEPFELFPENVTLPSIGEMPEELALAMGHINFMKYWKAS 221

Query: 61  PFYLEENVMKKVQRTEIEKFSDRSKSNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLQT 120
           PFYLEENVMKK+QRTEIEKFSDR+K N+TLKRDSLAQI+QLTSRNFPEELVEGFKGKL+T
Sbjct: 222 PFYLEENVMKKMQRTEIEKFSDRTKLNNTLKRDSLAQIIQLTSRNFPEELVEGFKGKLRT 281

Query: 121 KRKVQWNPGSGLQKLDFLEKREESLKGQ 149
           KRKVQWNP SGL+K+D LEKREESLKGQ
Sbjct: 282 KRKVQWNPDSGLKKMDLLEKREESLKGQ 307

[Close]

BLAST of Cla97C09G162160 vs. TrEMBL
Match: tr|A0A1S4E3Q9|A0A1S4E3Q9_CUCME (DNA-directed RNA polymerase III subunit RPC7-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500773 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.1e-43
Identity = 93/109 (85.32%), Postives = 100/109 (91.74%), Query Frame = 0


Query: 40  MPEERSLALRNNKFLNYWKASPFYLEENVMKKVQRTEIEKFSDRSKSNSTLKRDSLAQIL 99
           MPEE +LA+    FL YWKASPFYLEENVMKK+QRTEIEKFSDR K NSTLKRDSLAQI+
Sbjct: 1   MPEELALAMGQINFLKYWKASPFYLEENVMKKMQRTEIEKFSDRLKMNSTLKRDSLAQII 60

Query: 100 QLTSRNFPEELVEGFKGKLQTKRKVQWNPGSGLQKLDFLEKREESLKGQ 149
           QLTSRNFPEELVEGFKGKL+TKRKVQWNP SGL+K+DFLEKREESLKGQ
Sbjct: 61  QLTSRNFPEELVEGFKGKLRTKRKVQWNPESGLKKMDFLEKREESLKGQ 109

[Close]

BLAST of Cla97C09G162160 vs. TrEMBL
Match: tr|F6HY81|F6HY81_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_09s0002g03240 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 1.1e-35
Identity = 79/130 (60.77%), Postives = 99/130 (76.15%), Query Frame = 0


Query: 20  AKQEPFELFPENVTLPSVSDMPEERSLALRNNKFLNYWKASPFYLEENVMKKVQRTEIEK 79
           AKQEPF LFP+ + LP VS +PEE++L +RN +  NYWK+SP+YLE+ V +K Q T+IE+
Sbjct: 24  AKQEPFVLFPD-IELPDVSSVPEEKNLVIRNARLQNYWKSSPYYLEDIVPRKSQSTDIER 83

Query: 80  FSDRSKSNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLQTKRKVQWNPGSGLQKLDFLE 139
           FSDR K  +TLKRD L QIL+LTS NFP ELV+G KG    KRKVQWNP S +QKL+  E
Sbjct: 84  FSDRVKLRTTLKRDPLEQILRLTSNNFPLELVQGMKGATHNKRKVQWNPESDMQKLELFE 143

Query: 140 KREESLKGQD 150
           K E+ L+GQD
Sbjct: 144 KLEKKLEGQD 152

[Close]

BLAST of Cla97C09G162160 vs. TrEMBL
Match: tr|A0A061DG27|A0A061DG27_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_000033 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 3.2e-27
Identity = 68/128 (53.12%), Postives = 89/128 (69.53%), Query Frame = 0


Query: 19  YAKQEPFELFPENVTLPSVSDMPEERSLALRNNKFLNYWKASPFYLEENVMKKVQRTEIE 78
           Y K EP  LFP+ V LP V  +PEE++L + N++  NYWKASP+YLEENV KK Q  +IE
Sbjct: 231 YFKPEPVVLFPD-VELPDVKGVPEEKTLVIWNSRLQNYWKASPYYLEENVSKKSQSKDIE 290

Query: 79  KFSDRSKSNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLQTKRKVQWNPGSGLQKLDFL 138
           ++SD  K  ST KRDSL QILQL S NFP+EL+   +   ++ +K++WN  SGL KLD  
Sbjct: 291 RYSDWEKPKSTSKRDSLNQILQLQSHNFPKELIGDSRRAQRSAKKMRWNLDSGLDKLDTF 350

Query: 139 EKREESLK 147
           EK E+ L+
Sbjct: 351 EKFEQGLE 357

The following BLAST results are available for this feature:

BLAST of Cla97C09G162160 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008462407.1	2.0e-57	87.84	PREDICTED: DNA-directed RNA polymerase III subunit RPC7-like isoform X1 [Cucumis...	[more]
XP_022154143.1	2.0e-57	87.84	ribosomal L1 domain-containing protein CG13096-like [Momordica charantia] >XP_02...	[more]
XP_023548752.1	9.9e-57	85.91	DNA-directed RNA polymerase III subunit rpc31-like [Cucurbita pepo subsp. pepo]	[more]
XP_022953194.1	2.2e-56	85.23	glutamic acid-rich protein-like [Cucurbita moschata]	[more]
XP_022992400.1	1.1e-55	84.56	DNA-directed RNA polymerase III subunit rpc31-like [Cucurbita maxima]	[more]

BLAST of Cla97C09G162160 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CGV4\|A0A1S3CGV4_CUCME	1.3e-57	87.84	DNA-directed RNA polymerase III subunit RPC7-like isoform X1 OS=Cucumis melo OX=...	[more]
tr\|A0A0A0KCT3\|A0A0A0KCT3_CUCSA	1.2e-55	83.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G452310 PE=4 SV=1	[more]
tr\|A0A1S4E3Q9\|A0A1S4E3Q9_CUCME	1.1e-43	85.32	DNA-directed RNA polymerase III subunit RPC7-like isoform X2 OS=Cucumis melo OX=...	[more]
tr\|F6HY81\|F6HY81_VITVI	1.1e-35	60.77	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_09s0002g03240 PE=4 SV=...	[more]
tr\|A0A061DG27\|A0A061DG27_THECC	3.2e-27	53.13	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_000033 PE=4 SV=1	[more]

BLAST of Cla97C09G162160 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C09G162160 vs. TAIR10


Match Name	E-value	Identity	Description

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003899	DNA-directed RNA polymerase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006383	transcription from RNA polymerase III promoter

Vocabulary: **INTERPRO**
Term	Definition
IPR024661	RNA_pol_III_Rpc31

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006383	transcription from RNA polymerase III promoter
biological_process	GO:0008150	biological_process
biological_process	GO:0006359	regulation of transcription from RNA polymerase III promoter
biological_process	GO:0006384	transcription initiation from RNA polymerase III promoter
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005666	DNA-directed RNA polymerase III complex
cellular_component	GO:0000790	nuclear chromatin
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003899	DNA-directed RNA polymerase activity
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0001056	RNA polymerase III activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C09G162160.1	Cla97C09G162160.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024661	DNA-directed RNA polymerase III, subunit Rpc31	PFAM	PF11705	RNA_pol_3_Rpc31	coord: 4..192 e-value: 5.3E-17 score: 62.7
IPR024661	DNA-directed RNA polymerase III, subunit Rpc31	PANTHER	PTHR15367	DNA-DIRECTED RNA POLYMERASE III	coord: 1..204
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 140..206
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 158..206
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 140..157
None	No IPR available	PANTHER	PTHR15367:SF2	IP08436P	coord: 1..204

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C09G162160	Cla000909	Watermelon (97103) v1	wmwmbB006
Cla97C09G162160	Csa7G452310	Cucumber (Chinese Long) v2	cuwmbB570
Cla97C09G162160	MELO3C024432	Melon (DHL92) v3.5.1	mewmbB222
Cla97C09G162160	ClCG09G000270	Watermelon (Charleston Gray)	wcgwmbB035
Cla97C09G162160	CSPI07G23240	Wild cucumber (PI 183967)	cpiwmbB596
Cla97C09G162160	Cucsa.360960	Cucumber (Gy14) v1	cgywmbB619
Cla97C09G162160	Lsi02G029790	Bottle gourd (USVL1VR-Ls)	lsiwmbB213
Cla97C09G162160	MELO3C024432.2	Melon (DHL92) v3.6.1	medwmbB207
Cla97C09G162160	Carg09484	Silver-seed gourd	carwmbB1090
Cla97C09G162160	CsaV3_7G035230	Cucumber (Chinese Long) v3	cucwmbB592
Cla97C09G162160	Bhi09G000385	Wax gourd	wgowmbB612

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C09G162160	Watermelon (97103) v2	wmbwmbB166
Cla97C09G162160	Silver-seed gourd	carwmbB0129
Cla97C09G162160	Silver-seed gourd	carwmbB0208
Cla97C09G162160	Silver-seed gourd	carwmbB0783
Cla97C09G162160	Cucumber (Gy14) v2	cgybwmbB251
Cla97C09G162160	Cucumber (Gy14) v2	cgybwmbB541
Cla97C09G162160	Cucurbita maxima (Rimu)	cmawmbB282
Cla97C09G162160	Cucurbita maxima (Rimu)	cmawmbB389
Cla97C09G162160	Cucurbita maxima (Rimu)	cmawmbB517
Cla97C09G162160	Cucurbita maxima (Rimu)	cmawmbB933
Cla97C09G162160	Cucurbita moschata (Rifu)	cmowmbB264
Cla97C09G162160	Cucurbita moschata (Rifu)	cmowmbB372
Cla97C09G162160	Cucurbita moschata (Rifu)	cmowmbB500
Cla97C09G162160	Cucurbita moschata (Rifu)	cmowmbB910
Cla97C09G162160	Wild cucumber (PI 183967)	cpiwmbB269
Cla97C09G162160	Cucumber (Chinese Long) v3	cucwmbB263
Cla97C09G162160	Cucumber (Chinese Long) v2	cuwmbB262
Cla97C09G162160	Bottle gourd (USVL1VR-Ls)	lsiwmbB419
Cla97C09G162160	Melon (DHL92) v3.6.1	medwmbB348
Cla97C09G162160	Melon (DHL92) v3.5.1	mewmbB359
Cla97C09G162160	Watermelon (Charleston Gray)	wcgwmbB309
Cla97C09G162160	Watermelon (97103) v1	wmwmbB185
Cla97C09G162160	Wax gourd	wgowmbB233