Cla97C09G162070 (gene) Watermelon (97103) v2

Overview
NameCla97C09G162070
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionPhosphatase 2C (PP2C)-like protein
LocationCla97Chr09 : 148710 .. 149814 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACATCGTGGAGATCGCCATGTATGTTCATCCCTTCTTCCACGCGTTGCTGCAGCAAAAATCACTTCTACACAGTTGTATCCTTCTTTTTTACCCCTAACTTATCTTTCTAATCTTGTGTCGTTTCAGCTTTATGCTGGCTGATTTTGTTGCCTTCCAAAGTCAAGTGCTTGTCATCAACGACTCCGATGAATCCTTAACAGATGCGAATGCCAAAAGGCTGACCACTACTCGTAGGAACAACAGTGGCTCGATGAGTGCAATGGACAATGGACGTGGTAGTCTTGAGATTTCGTGGGGTTTTGGATTGGAGAAGGGGCGCAGAACTGCAATGGAAGATGCCATCGCCATTGTTCCAATGTTTCTATCTCCAGTGGGATGGAAAGATGATGGGTCGGTGGAGGAAGATTCTCAGCTGGTTCGTTATTTTGGCTTGTTTGATTTGATGGGCACGGAGGTTTTCAGGTACTTCTTTTCGTTATCTTTAGTGACTTGAATGCATTGATTTGTATGCAGGTTTTAAGATACGACCTTTTAGGCTTGATCATCATTTGTTTCAAACTCGGTTGTAGGTGTTATTTTAAAATTATTGAGTTGGATTGAACCTATTCAAATTTATTATCAATTTAACCTAACCATTATGCCTTAATCGGCCAAATCTCTTGCTCTATTGGTGTTTTAAAGATTTTAAAATAGCCAACTGATTCAATTAAATATGATGTCGAATTACTATTTTTAAGTTGACCGATTTAGTGAGTATTTCATAAGTATTTGTTTGGGCTTAAATATTTGAGTTTAAGTTATGGGAAACCAATCGAATGGTACACGATTGCTCTTGTCTCACCCTGCAATGGAAACAGAGGCAGCAGCCCAAACGTCTCTTGATTGCTTTTACTTGAAGTGTACACCACCAATAATTAAGAACAAAGCCATAACGATATCAACTTTTATTTATTTATTTATTTATTTTGCAAGATGAAAAATGCTCCAATAAGATTCTCGAATGTGATCGCTGTAGGGACTCGAAAGCGACGGTGCACGTGCCTCATCACGTGGACTCCCCTCTTCTGAATTCTGGACATTTATTTATAATTCTTACCTAA

mRNA sequence

ATGCACATCGTGGAGATCGCCATCTTTATGCTGGCTGATTTTGTTGCCTTCCAAAGTCAAGTGCTTGTCATCAACGACTCCGATGAATCCTTAACAGATGCGAATGCCAAAAGGCTGACCACTACTCGTAGGAACAACAGTGGCTCGATGAGTGCAATGGACAATGGACGTGGTAGTCTTGAGATTTCGTGGGGTTTTGGATTGGAGAAGGGGCGCAGAACTGCAATGGAAGATGCCATCGCCATTGTTCCAATGTTTCTATCTCCAGTGGGATGGAAAGATGATGGGTCGGTGGAGGAAGATTCTCAGCTGGTTCGTTATTTTGGCTTGTTTGATTTGATGGGCACGGAGGTTTTCAGGGACTCGAAAGCGACGGTGCACGTGCCTCATCACGTGGACTCCCCTCTTCTGAATTCTGGACATTTATTTATAATTCTTACCTAA

Coding sequence (CDS)

ATGCACATCGTGGAGATCGCCATCTTTATGCTGGCTGATTTTGTTGCCTTCCAAAGTCAAGTGCTTGTCATCAACGACTCCGATGAATCCTTAACAGATGCGAATGCCAAAAGGCTGACCACTACTCGTAGGAACAACAGTGGCTCGATGAGTGCAATGGACAATGGACGTGGTAGTCTTGAGATTTCGTGGGGTTTTGGATTGGAGAAGGGGCGCAGAACTGCAATGGAAGATGCCATCGCCATTGTTCCAATGTTTCTATCTCCAGTGGGATGGAAAGATGATGGGTCGGTGGAGGAAGATTCTCAGCTGGTTCGTTATTTTGGCTTGTTTGATTTGATGGGCACGGAGGTTTTCAGGGACTCGAAAGCGACGGTGCACGTGCCTCATCACGTGGACTCCCCTCTTCTGAATTCTGGACATTTATTTATAATTCTTACCTAA

Protein sequence

MHIVEIAIFMLADFVAFQSQVLVINDSDESLTDANAKRLTTTRRNNSGSMSAMDNGRGSLEISWGFGLEKGRRTAMEDAIAIVPMFLSPVGWKDDGSVEEDSQLVRYFGLFDLMGTEVFRDSKATVHVPHHVDSPLLNSGHLFIILT
Homology
[Close]
BLAST of Cla97C09G162070 vs. NCBI nr
Match: XP_023000377.1 (probable protein phosphatase 2C 6 [Cucurbita maxima])

HSP 1 Score: 107.8 bits (268), Expect = 3.1e-20
Identity = 52/63 (82.54%), Postives = 55/63 (87.30%), Query Frame = 0 

Query: 50  MSAMDNGRGSLEISWGFGLEKGRRTAMEDAIAIVPMFLSPVGWKDDGSVEEDSQLVRYFG 109
           MSAMDNGRGS EISWGFGL+KGRRT+MEDAIAIVP FLSP  WKDDGSV+E   LV YFG
Sbjct: 1   MSAMDNGRGSCEISWGFGLDKGRRTSMEDAIAIVPEFLSPARWKDDGSVKE-KPLVHYFG 60

Query: 110 LFD 113
           LFD
Sbjct: 61  LFD 62

[Close]
BLAST of Cla97C09G162070 vs. NCBI nr
Match: XP_023514702.1 (probable protein phosphatase 2C 6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 107.1 bits (266), Expect = 5.3e-20
Identity = 51/64 (79.69%), Postives = 56/64 (87.50%), Query Frame = 0 

Query: 49  SMSAMDNGRGSLEISWGFGLEKGRRTAMEDAIAIVPMFLSPVGWKDDGSVEEDSQLVRYF 108
           SMSA+DNGRGS EISWGFGL+KGRRT+MEDAIAIVP FLSP  WKDDGS E++  LV YF
Sbjct: 3   SMSAIDNGRGSCEISWGFGLDKGRRTSMEDAIAIVPEFLSPARWKDDGS-EKEKPLVHYF 62

Query: 109 GLFD 113
           GLFD
Sbjct: 63  GLFD 65

[Close]
BLAST of Cla97C09G162070 vs. NCBI nr
Match: XP_023514700.1 (probable protein phosphatase 2C 6 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 104.8 bits (260), Expect = 2.6e-19
Identity = 50/64 (78.12%), Postives = 55/64 (85.94%), Query Frame = 0 

Query: 49  SMSAMDNGRGSLEISWGFGLEKGRRTAMEDAIAIVPMFLSPVGWKDDGSVEEDSQLVRYF 108
           SMSA+DNGRGS EISWGFGL+KGRRT+MEDAIAIVP FLSP  WKDDG  E++  LV YF
Sbjct: 3   SMSAIDNGRGSCEISWGFGLDKGRRTSMEDAIAIVPEFLSPARWKDDG-YEKEKPLVHYF 62

Query: 109 GLFD 113
           GLFD
Sbjct: 63  GLFD 65

[Close]
BLAST of Cla97C09G162070 vs. NCBI nr
Match: XP_023514701.1 (protein phosphatase 2C 56-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 104.0 bits (258), Expect = 4.5e-19
Identity = 50/63 (79.37%), Postives = 54/63 (85.71%), Query Frame = 0 

Query: 50  MSAMDNGRGSLEISWGFGLEKGRRTAMEDAIAIVPMFLSPVGWKDDGSVEEDSQLVRYFG 109
           MSA+DNG GS EISWGFGL+KGRRT+MEDAIAIVP FLSP  WKDDGSV+E   LV YFG
Sbjct: 4   MSAIDNGSGSCEISWGFGLDKGRRTSMEDAIAIVPEFLSPARWKDDGSVKE-KPLVHYFG 63

Query: 110 LFD 113
           LFD
Sbjct: 64  LFD 65

[Close]
BLAST of Cla97C09G162070 vs. NCBI nr
Match: XP_022964465.1 (probable protein phosphatase 2C 6 isoform X1 [Cucurbita moschata])

HSP 1 Score: 101.7 bits (252), Expect = 2.2e-18
Identity = 50/64 (78.12%), Postives = 53/64 (82.81%), Query Frame = 0 

Query: 49  SMSAMDNGRGSLEISWGFGLEKGRRTAMEDAIAIVPMFLSPVGWKDDGSVEEDSQLVRYF 108
           SMSA+DNG GS EISWGFGL+KGRRT+MEDAIAIVP FLS   WKDDGSV E   LV YF
Sbjct: 3   SMSAIDNGGGSCEISWGFGLDKGRRTSMEDAIAIVPEFLSSARWKDDGSVRE-KPLVHYF 62

Query: 109 GLFD 113
           GLFD
Sbjct: 63  GLFD 65

The following BLAST results are available for this feature:
BLAST of Cla97C09G162070 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023000377.13.1e-2082.54probable protein phosphatase 2C 6 [Cucurbita maxima][more]
XP_023514702.15.3e-2079.69probable protein phosphatase 2C 6 [Cucurbita pepo subsp. pepo][more]
XP_023514700.12.6e-1978.13probable protein phosphatase 2C 6 isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_023514701.14.5e-1979.37protein phosphatase 2C 56-like [Cucurbita pepo subsp. pepo][more]
XP_022964465.12.2e-1878.13probable protein phosphatase 2C 6 isoform X1 [Cucurbita moschata][more]
BLAST of Cla97C09G162070 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of Cla97C09G162070 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C09G162070 vs. TAIR10
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006470 protein dephosphorylation
biological_process GO:0008150 biological_process
cellular_component GO:0008287 protein serine/threonine phosphatase complex
cellular_component GO:0005575 cellular_component
molecular_function GO:0043169 cation binding
molecular_function GO:0004722 protein serine/threonine phosphatase activity
molecular_function GO:0003824 catalytic activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C09G162070.1Cla97C09G162070.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C09G162070Cla000900Watermelon (97103) v1wmwmbB006
Cla97C09G162070ClCG09G000170Watermelon (Charleston Gray)wcgwmbB035
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C09G162070Watermelon (97103) v2wmbwmbB166
Cla97C09G162070Silver-seed gourdcarwmbB0129
Cla97C09G162070Silver-seed gourdcarwmbB0208
Cla97C09G162070Silver-seed gourdcarwmbB0783
Cla97C09G162070Silver-seed gourdcarwmbB1090
Cla97C09G162070Cucumber (Gy14) v2cgybwmbB251
Cla97C09G162070Cucumber (Gy14) v2cgybwmbB541
Cla97C09G162070Cucumber (Gy14) v1cgywmbB619
Cla97C09G162070Cucurbita maxima (Rimu)cmawmbB282
Cla97C09G162070Cucurbita maxima (Rimu)cmawmbB389
Cla97C09G162070Cucurbita maxima (Rimu)cmawmbB517
Cla97C09G162070Cucurbita maxima (Rimu)cmawmbB933
Cla97C09G162070Cucurbita moschata (Rifu)cmowmbB264
Cla97C09G162070Cucurbita moschata (Rifu)cmowmbB372
Cla97C09G162070Cucurbita moschata (Rifu)cmowmbB500
Cla97C09G162070Cucurbita moschata (Rifu)cmowmbB910
Cla97C09G162070Wild cucumber (PI 183967)cpiwmbB269
Cla97C09G162070Wild cucumber (PI 183967)cpiwmbB596
Cla97C09G162070Cucumber (Chinese Long) v3cucwmbB263
Cla97C09G162070Cucumber (Chinese Long) v3cucwmbB592
Cla97C09G162070Cucumber (Chinese Long) v2cuwmbB262
Cla97C09G162070Cucumber (Chinese Long) v2cuwmbB570
Cla97C09G162070Bottle gourd (USVL1VR-Ls)lsiwmbB213
Cla97C09G162070Bottle gourd (USVL1VR-Ls)lsiwmbB419
Cla97C09G162070Melon (DHL92) v3.6.1medwmbB207
Cla97C09G162070Melon (DHL92) v3.6.1medwmbB348
Cla97C09G162070Melon (DHL92) v3.5.1mewmbB222
Cla97C09G162070Melon (DHL92) v3.5.1mewmbB359
Cla97C09G162070Watermelon (Charleston Gray)wcgwmbB309
Cla97C09G162070Watermelon (97103) v1wmwmbB185
Cla97C09G162070Wax gourdwgowmbB233
Cla97C09G162070Wax gourdwgowmbB612