Cla97C08G151890 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C08G151890
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	CLAVATA3/ESR (CLE)-related protein 25-like
Location	Cla97Chr08 : 20245736 .. 20246905 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTGTTATTCTCCTTCTTGTAAGCTTGGCTCACTGGCTGTTATGGCTTTTATTTGGCTTTTGTTGGCCAACGGTTCGCATCAAAGGGGAGAACCGGTTGCGGTAGGGATTGAGAAGGGGACGGCGACGATGACAGGTGAATTCAGTGGAATTTCTGGAGAGAAGGAGGTGGTCGGTGGTGGTCGCAACAAGCTTGTTCATCCAGAGTGGCACCTCAACTACATAAGCAAGAGAAGAGTTCCAAATGGCCCAGATCCTATCCATAACCGGTATCACGATTTTTTTTTTTTTTTTTTTTTTAAAAAAAAAATTAGATTTCACAATCATAGGTGCAGCCCGGCCAGCACCCAATTTTTTTTTTTTTTTTTAGTTCACAGCTATAAGTGGGATAGGCTTTGAATTTTTTTTTTTTTTTTTATCGAATTACAATTGAGCTTCAGGTTTTGTAAAACCATGTGGCTGTGTATATGTGTCTGAAATTTTGTTTTGTTTTTTATTTGTTTCATTAAAAAAAAAAAAGAAAAAAGGGAAATTAAGAAAGTATATTTGATAGATTTAGAGAGAGAGAGATGGAAATGGAAAAGGAGAGAGTGGGAGAGATAAAAAGTTCAAATTTAATCACTTTGCCTTTTAAAACTGTTACATTGAGTTCTTTTAGCTTAAAGGGTGTCATTTAAAGTCCTTGGTTGAAGGTGACACAAACATCTTTAAAACCACAGTAAATAAAAGTATGTATGTGTGTGTACTTCAATATATTCCATGCCTTTTAGTTAATCAATATCTCTTTATCCATTGCCTAATTAGTAAACTATTAGGTCTAAATTCCTCTCTAACTATAATTTCTCAATTATTTTAGTTTAAGAAAATTTTAATTTCAAGTCACACATTCAATCTAATATAAAATACGAACACAAGGATATAAGATTTAAGATAAATGGTTAATTTTATCTTTAAAATAAAAGAAAATATCAATCATAACATAGTTTAGTATATCAAGTCACTCATTCCAAAAGTTTATGTTTCGATTTTCATCCTAAAAACATTGAACTAATAAACGTTTTAAATCAAAATCTAATTAGTTTATTAGACACGAAGATAACATTTTATTTTTTGTTTTTATTTCTTAGGAGAGCTGGAAACTCTGGAAGACCACCAGGCAAGGCTTAG

mRNA sequence

ATGAGTTGTTATTCTCCTTCTTGTAAGCTTGGCTCACTGGCTGTTATGGCTTTTATTTGGCTTTTGTTGGCCAACGGTTCGCATCAAAGGGGAGAACCGGTTGCGGTAGGGATTGAGAAGGGGACGGCGACGATGACAGGTGAATTCAGTGGAATTTCTGGAGAGAAGGAGGTGGTCGGTGGTGGTCGCAACAAGCTTGTTCATCCAGAGTGGCACCTCAACTACATAAGCAAGAGAAGAGTTCCAAATGGCCCAGATCCTATCCATAACCGGAGAGCTGGAAACTCTGGAAGACCACCAGGCAAGGCTTAG

Coding sequence (CDS)

ATGAGTTGTTATTCTCCTTCTTGTAAGCTTGGCTCACTGGCTGTTATGGCTTTTATTTGGCTTTTGTTGGCCAACGGTTCGCATCAAAGGGGAGAACCGGTTGCGGTAGGGATTGAGAAGGGGACGGCGACGATGACAGGTGAATTCAGTGGAATTTCTGGAGAGAAGGAGGTGGTCGGTGGTGGTCGCAACAAGCTTGTTCATCCAGAGTGGCACCTCAACTACATAAGCAAGAGAAGAGTTCCAAATGGCCCAGATCCTATCCATAACCGGAGAGCTGGAAACTCTGGAAGACCACCAGGCAAGGCTTAG

Protein sequence

MSCYSPSCKLGSLAVMAFIWLLLANGSHQRGEPVAVGIEKGTATMTGEFSGISGEKEVVGGGRNKLVHPEWHLNYISKRRVPNGPDPIHNRRAGNSGRPPGKA

Homology

[Close]

BLAST of Cla97C08G151890 vs. NCBI nr
Match: XP_004146759.1 (PREDICTED: uncharacterized protein LOC101209880 [Cucumis sativus] >KGN47786.1 hypothetical protein Csa_6G402550 [Cucumis sativus])

HSP 1 Score: 144.8 bits (364), Expect = 1.6e-31
Identity = 78/106 (73.58%), Postives = 81/106 (76.42%), Query Frame = 0


Query: 1   MSCYSPSCKLGSLAVMAFIWLLLANGSHQRGEPVAVGIEKGTATMTGEFSGISGEKEV-V 60
           M+CY  SCK GSL +MAFIWLLLANGS QR EPV VG  K T     E SGIS E  V V
Sbjct: 1   MTCYCSSCKFGSLLLMAFIWLLLANGSCQRKEPVVVG--KVTTATGDEISGISKETTVAV 60

Query: 61  GGGRNKLV--HPEWHLNYISKRRVPNGPDPIHNRRAGNSGRPPGKA 104
           GGGR   V  HPEWHLNY+SKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 61  GGGRGGKVVDHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 104

[Close]

BLAST of Cla97C08G151890 vs. NCBI nr
Match: XP_022999782.1 (uncharacterized protein LOC111494028 [Cucurbita maxima])

HSP 1 Score: 144.4 bits (363), Expect = 2.1e-31
Identity = 74/104 (71.15%), Postives = 81/104 (77.88%), Query Frame = 0


Query: 1   MSCYSPSCKLGSLAVMAFIWLLLANGSHQRGEPVAVGIEKGTATMTGEFSGISGEKEVVG 60
           MS YSPSCK  ++AVM FIWLLL NGSHQRG+ VA G+  GT     +F GIS E EVVG
Sbjct: 1   MSSYSPSCK--AMAVMGFIWLLLVNGSHQRGQSVATGM--GTTMTAAQFGGISKEMEVVG 60

Query: 61  G-GRNKLVHPEWHLNYISKRRVPNGPDPIHNRRAGNSGRPPGKA 104
           G G   +V  EWHLNY+SKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 61  GRGGKDVVRSEWHLNYVSKRRVPNGPDPIHNRRAGNSGRPPGKA 100

[Close]

BLAST of Cla97C08G151890 vs. NCBI nr
Match: XP_008464794.1 (PREDICTED: uncharacterized protein LOC103502597 [Cucumis melo])

HSP 1 Score: 143.7 bits (361), Expect = 3.6e-31
Identity = 73/101 (72.28%), Postives = 77/101 (76.24%), Query Frame = 0


Query: 3   CYSPSCKLGSLAVMAFIWLLLANGSHQRGEPVAVGIEKGTATMTGEFSGISGEKEVVGGG 62
           C+  SCK GSL VMAFIWLLLANGS QR EPV VG  K T  M  EFSG+  +  VV GG
Sbjct: 5   CWCSSCKFGSLLVMAFIWLLLANGSCQRKEPVVVG--KVTTAMGDEFSGVFKKTTVVVGG 64

Query: 63  RNKLVHPEWHLNYISKRRVPNGPDPIHNRRAGNSGRPPGKA 104
                HPEWHLNY+SKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 65  GKVADHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 103

[Close]

BLAST of Cla97C08G151890 vs. NCBI nr
Match: XP_022946527.1 (uncharacterized protein LOC111450563 [Cucurbita moschata])

HSP 1 Score: 143.7 bits (361), Expect = 3.6e-31
Identity = 74/104 (71.15%), Postives = 81/104 (77.88%), Query Frame = 0


Query: 1   MSCYSPSCKLGSLAVMAFIWLLLANGSHQRGEPVAVGIEKGTATMTGEFSGISGEKEVVG 60
           MS YSPSCK  ++AVM FIWLLL NGSHQRG+ VA G+   T T   +F GIS E EVVG
Sbjct: 1   MSSYSPSCK--AMAVMGFIWLLLVNGSHQRGQSVATGMT--TTTTAAQFGGISKEMEVVG 60

Query: 61  G-GRNKLVHPEWHLNYISKRRVPNGPDPIHNRRAGNSGRPPGKA 104
           G G   +V  EWHLNY+SKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 61  GRGGKDVVRSEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 100

[Close]

BLAST of Cla97C08G151890 vs. NCBI nr
Match: XP_023521565.1 (uncharacterized protein LOC111785387 [Cucurbita pepo subsp. pepo] >XP_023546055.1 uncharacterized protein LOC111805292 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 142.9 bits (359), Expect = 6.1e-31
Identity = 74/104 (71.15%), Postives = 81/104 (77.88%), Query Frame = 0


Query: 1   MSCYSPSCKLGSLAVMAFIWLLLANGSHQRGEPVAVGIEKGTATMTGEFSGISGEKEVVG 60
           MS YSPSCK  ++AVM FIWLLL NGSHQRG+ VA G+   T T   +F GIS E EVVG
Sbjct: 1   MSSYSPSCK--AMAVMGFIWLLLVNGSHQRGQSVATGMM--TITTAAQFGGISKEMEVVG 60

Query: 61  G-GRNKLVHPEWHLNYISKRRVPNGPDPIHNRRAGNSGRPPGKA 104
           G G   +V  EWHLNY+SKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 61  GRGGKDVVRSEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 100

[Close]

BLAST of Cla97C08G151890 vs. TrEMBL
Match: tr|A0A0A0KJ25|A0A0A0KJ25_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G402550 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.1e-31
Identity = 78/106 (73.58%), Postives = 81/106 (76.42%), Query Frame = 0


Query: 1   MSCYSPSCKLGSLAVMAFIWLLLANGSHQRGEPVAVGIEKGTATMTGEFSGISGEKEV-V 60
           M+CY  SCK GSL +MAFIWLLLANGS QR EPV VG  K T     E SGIS E  V V
Sbjct: 1   MTCYCSSCKFGSLLLMAFIWLLLANGSCQRKEPVVVG--KVTTATGDEISGISKETTVAV 60

Query: 61  GGGRNKLV--HPEWHLNYISKRRVPNGPDPIHNRRAGNSGRPPGKA 104
           GGGR   V  HPEWHLNY+SKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 61  GGGRGGKVVDHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 104

[Close]

BLAST of Cla97C08G151890 vs. TrEMBL
Match: tr|A0A1S3CMA2|A0A1S3CMA2_CUCME (uncharacterized protein LOC103502597 OS=Cucumis melo OX=3656 GN=LOC103502597 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 2.4e-31
Identity = 73/101 (72.28%), Postives = 77/101 (76.24%), Query Frame = 0


Query: 3   CYSPSCKLGSLAVMAFIWLLLANGSHQRGEPVAVGIEKGTATMTGEFSGISGEKEVVGGG 62
           C+  SCK GSL VMAFIWLLLANGS QR EPV VG  K T  M  EFSG+  +  VV GG
Sbjct: 5   CWCSSCKFGSLLVMAFIWLLLANGSCQRKEPVVVG--KVTTAMGDEFSGVFKKTTVVVGG 64

Query: 63  RNKLVHPEWHLNYISKRRVPNGPDPIHNRRAGNSGRPPGKA 104
                HPEWHLNY+SKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 65  GKVADHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 103

[Close]

BLAST of Cla97C08G151890 vs. TrEMBL
Match: tr|M5XZR3|M5XZR3_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G263100 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.1e-15
Identity = 55/94 (58.51%), Postives = 62/94 (65.96%), Query Frame = 0


Query: 11  GSLAVMAFIWLLLANGSHQRGEPVAVGIEKGTATMTGEFSGISGEKEV-VGGGRNKLVHP 70
           G+LAVM FI +LL      +G     G+ K TAT T        EK   V G  NKLVHP
Sbjct: 16  GTLAVMGFICVLLVGTLETQG-----GLTK-TATSTAAAPESFSEKPADVVGRENKLVHP 75

Query: 71  EWHLNYISKRRVPNGPDPIHNRRAGNSGRPPGKA 104
           E  LNY+SKRRVPNGPDPIHNRRAG+SGRPPG+A
Sbjct: 76  ELDLNYMSKRRVPNGPDPIHNRRAGSSGRPPGQA 103

[Close]

BLAST of Cla97C08G151890 vs. TrEMBL
Match: tr|A0A2P4MYH7|A0A2P4MYH7_QUESU (Isoform 2 of clavata3/esr (Cle)-related protein 26 OS=Quercus suber OX=58331 GN=CFP56_40576 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 6.5e-13
Identity = 51/94 (54.26%), Postives = 58/94 (61.70%), Query Frame = 0


Query: 10  LGSLAVMAFIWLLLANGSHQRGEPVAVGIEKGTATMTGEFSGISGEKEVVGGGRNKLV-H 69
           LG+LA++ FI+LLL               E G A M    S  SG       G+ KLV H
Sbjct: 18  LGALALVGFIFLLLVGNQ-----------ESGRAKMETTLSTQSGAN---FKGKEKLVDH 77

Query: 70  PEWHLNYISKRRVPNGPDPIHNRRAGNSGRPPGK 103
           PE  LNY+SKRRVPNGPDPIHNRRAGNSGRPPG+
Sbjct: 78  PELDLNYMSKRRVPNGPDPIHNRRAGNSGRPPGQ 97

[Close]

BLAST of Cla97C08G151890 vs. TrEMBL
Match: tr|A0A061EDD3|A0A061EDD3_THECC (Clavata3/esr-related 26, putative isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_010103 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 5.5e-12
Identity = 43/94 (45.74%), Postives = 59/94 (62.77%), Query Frame = 0


Query: 11  GSLAVMAFIWLLLANGSHQRGEPVAVGIEKGTATMTGEFSGISGEKEVVGGGRNKL-VHP 70
           G+L V+ FI +LL              +   T++ TG+   +    +V+G G++ +  HP
Sbjct: 20  GTLVVLGFILVLLVGTLQSEENETKTTLRTETSSSTGK---LQEHAKVLGRGKSLIDGHP 79

Query: 71  EWHLNYISKRRVPNGPDPIHNRRAGNSGRPPGKA 104
           +  LNY+SKRRVPNGPDPIHNRRAGNS RPPG+A
Sbjct: 80  QLDLNYMSKRRVPNGPDPIHNRRAGNSRRPPGQA 110

[Close]

BLAST of Cla97C08G151890 vs. Swiss-Prot
Match: sp|Q8LFL4|CLE25_ARATH (CLAVATA3/ESR (CLE)-related protein 25 OS=Arabidopsis thaliana OX=3702 GN=CLE25 PE=2 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.5e-04
Identity = 20/29 (68.97%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 72  HLNYISKRRVPNGPDPIHNRRAGNSGRPP 101
           +L ++SKR+VPNGPDPIHNR+A  S RPP
Sbjct: 51  NLFHVSKRKVPNGPDPIHNRKAETSRRPP 79

[Close]

BLAST of Cla97C08G151890 vs. TAIR10
Match: AT3G28455.1 (CLAVATA3/ESR-RELATED 25)

HSP 1 Score: 46.2 bits (108), Expect = 1.4e-05
Identity = 20/29 (68.97%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 72  HLNYISKRRVPNGPDPIHNRRAGNSGRPP 101
           +L ++SKR+VPNGPDPIHNR+A  S RPP
Sbjct: 51  NLFHVSKRKVPNGPDPIHNRKAETSRRPP 79

The following BLAST results are available for this feature:

BLAST of Cla97C08G151890 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146759.1	1.6e-31	73.58	PREDICTED: uncharacterized protein LOC101209880 [Cucumis sativus] >KGN47786.1 hy...	[more]
XP_022999782.1	2.1e-31	71.15	uncharacterized protein LOC111494028 [Cucurbita maxima]	[more]
XP_008464794.1	3.6e-31	72.28	PREDICTED: uncharacterized protein LOC103502597 [Cucumis melo]	[more]
XP_022946527.1	3.6e-31	71.15	uncharacterized protein LOC111450563 [Cucurbita moschata]	[more]
XP_023521565.1	6.1e-31	71.15	uncharacterized protein LOC111785387 [Cucurbita pepo subsp. pepo] >XP_023546055....	[more]

BLAST of Cla97C08G151890 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KJ25\|A0A0A0KJ25_CUCSA	1.1e-31	73.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G402550 PE=4 SV=1	[more]
tr\|A0A1S3CMA2\|A0A1S3CMA2_CUCME	2.4e-31	72.28	uncharacterized protein LOC103502597 OS=Cucumis melo OX=3656 GN=LOC103502597 PE=...	[more]
tr\|M5XZR3\|M5XZR3_PRUPE	1.1e-15	58.51	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G263100 PE=4 SV=1	[more]
tr\|A0A2P4MYH7\|A0A2P4MYH7_QUESU	6.5e-13	54.26	Isoform 2 of clavata3/esr (Cle)-related protein 26 OS=Quercus suber OX=58331 GN=...	[more]
tr\|A0A061EDD3\|A0A061EDD3_THECC	5.5e-12	45.74	Clavata3/esr-related 26, putative isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_01...	[more]

BLAST of Cla97C08G151890 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8LFL4\|CLE25_ARATH	2.5e-04	68.97	CLAVATA3/ESR (CLE)-related protein 25 OS=Arabidopsis thaliana OX=3702 GN=CLE25 P...	[more]

BLAST of Cla97C08G151890 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G28455.1	1.4e-05	68.97	CLAVATA3/ESR-RELATED 25	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0045168	cell-cell signaling involved in cell fate commitment

Vocabulary: **INTERPRO**
Term	Definition
IPR039316	CLE25/26

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0045168	cell-cell signaling involved in cell fate commitment
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C08G151890.1	Cla97C08G151890.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..103
None	No IPR available	PANTHER	PTHR34277:SF2	SUBFAMILY NOT NAMED	coord: 10..103
IPR039316	CLAVATA3/ESR (CLE)-related protein 25/26	PANTHER	PTHR34277	FAMILY NOT NAMED	coord: 10..103

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C08G151890	Cla021904	Watermelon (97103) v1	wmwmbB100
Cla97C08G151890	Csa6G402550	Cucumber (Chinese Long) v2	cuwmbB499
Cla97C08G151890	MELO3C026507	Melon (DHL92) v3.5.1	mewmbB303
Cla97C08G151890	ClCG08G009090	Watermelon (Charleston Gray)	wcgwmbB336
Cla97C08G151890	CSPI06G21030	Wild cucumber (PI 183967)	cpiwmbB525
Cla97C08G151890	CmaCh05G009510	Cucurbita maxima (Rimu)	cmawmbB831
Cla97C08G151890	CmoCh05G009700	Cucurbita moschata (Rifu)	cmowmbB801
Cla97C08G151890	CsGy6G020320	Cucumber (Gy14) v2	cgybwmbB476
Cla97C08G151890	MELO3C026507.2	Melon (DHL92) v3.6.1	medwmbB290
Cla97C08G151890	Carg21903	Silver-seed gourd	carwmbB0214
Cla97C08G151890	CsaV3_6G036050	Cucumber (Chinese Long) v3	cucwmbB518
Cla97C08G151890	Bhi04G000997	Wax gourd	wgowmbB319

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C08G151890	Silver-seed gourd	carwmbB0139
Cla97C08G151890	Silver-seed gourd	carwmbB0140
Cla97C08G151890	Cucumber (Gy14) v1	cgywmbB055
Cla97C08G151890	Cucurbita maxima (Rimu)	cmawmbB196
Cla97C08G151890	Cucurbita maxima (Rimu)	cmawmbB200
Cla97C08G151890	Cucurbita moschata (Rifu)	cmowmbB180
Cla97C08G151890	Cucurbita moschata (Rifu)	cmowmbB183
Cla97C08G151890	Bottle gourd (USVL1VR-Ls)	lsiwmbB444
Cla97C08G151890	Wax gourd	wgowmbB540