Cla97C08G151340 (gene) Watermelon (97103) v2

Overview
NameCla97C08G151340
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionUnknown protein
LocationCla97Chr08 : 19669955 .. 19671112 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAGGATCTTATTCATCCTCTTACACAAATTGCGGTCAGCATTTCTTGAGGGTTTATGAATATTTGTTGAATTTGTATGTCTATTGTTGATTTTGCGTTCAGTTGATGGATCTTTCAGAGAGATGGAGGGCTAGGGTTTAGATTTGGGGACTGATGATTCTCTTTCTGATGATTTTGTTGAAATTGAGTTTATTTTCTCTGTTTACTGATTTCGCATCGCGAGCTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTTATTTTTATAGTTAATTTTTGTAAAATTTTCTTCTGTCTCTGTTTCAGATCTTCCATTATCGCCATTTTCTCTGCTGGTAACTCAATTCGGCACCTCGAGTGAGCTGTTGATTTCTCGTTTGATCGTTTCTGTGTGCTTTTCCTTAAGTCGGCGATTTAAAGCATATTTCTTTGTGAATCTATTCTGTCGCGAGGGCCCGATTCAGGTACATCGGTTCTCTATTTTCGTTCCTTGATGGAGATGGATTGGTATCGATTTTAGGTCGCGATTTTTGGAAATTCATTCGTTCTGTTTTCATTTTTGATTTTGGTGTAGCTAGGAAGGATCTGTATTTAGTAGGCTACGGTTTTTACTTTTTTTGCGTTGATTATGCAGTATTTGTTGCAATAATTGCGGACTTTTTTTTGTGTGTAATTAATGAGTCAATTACTCTGAGTTTTGTTCTCTGAGTTATCGAACTTTAAGAATTTATGATGAGTGATTCTTCTAGGTTAGGGTAATAGATTTTAATTACTTCGCTCATTTATTTCCTTCCTTATGGAGTAACAGAATTTTAATTGGCTGTCGAAATTTCTTCTCCACATTTGTTCCTTTAATGGATCAGGGAGATCTATACATTTCAAACATTTATGAAGAGTTAATTATTTATTGTAGTACTGATTAGTAAAAATATTGTAATTAAACATAGTTTATCCTTCCATTTCTTTGAATCTTCATTTAATTTTCTTGGTGAAGTGTGAACTATCTCTGTTCCTTTCTATTTTTGTACTCAGGTTTGATCATTGTGAATTTTCTTCTGTTTGTTTAAGTCTGCACTTTCTCTCTTAACTTTCTCTTGTTTTTATCGATATTCCTAAATTGTTTGTAGGATCTTTATTTGACTGCAAATTAA

mRNA sequence

ATGCCAGGATCTTATTCATCCTCTTACACAAATTGCGGTCAGCATTTCTTGAGGTTAATTTTTGTAAAATTTTCTTCTGTCTCTGTTTCAGATCTTCCATTATCGCCATTTTCTCTGCTGGTAACTCAATTCGGCACCTCGAGTGAGCTGTTGATTTCTCGTTTGATCGTTTCTGTGTGCTTTTCCTTAAGTCGGCGATTTAAAGCATATTTCTTTGTGAATCTATTCTGTCGCGAGGGCCCGATTCAGGATCTTTATTTGACTGCAAATTAA

Coding sequence (CDS)

ATGCCAGGATCTTATTCATCCTCTTACACAAATTGCGGTCAGCATTTCTTGAGGTTAATTTTTGTAAAATTTTCTTCTGTCTCTGTTTCAGATCTTCCATTATCGCCATTTTCTCTGCTGGTAACTCAATTCGGCACCTCGAGTGAGCTGTTGATTTCTCGTTTGATCGTTTCTGTGTGCTTTTCCTTAAGTCGGCGATTTAAAGCATATTTCTTTGTGAATCTATTCTGTCGCGAGGGCCCGATTCAGGATCTTTATTTGACTGCAAATTAA

Protein sequence

MPGSYSSSYTNCGQHFLRLIFVKFSSVSVSDLPLSPFSLLVTQFGTSSELLISRLIVSVCFSLSRRFKAYFFVNLFCREGPIQDLYLTAN
Homology
[Close]
BLAST of Cla97C08G151340 vs. NCBI nr
Match: KGN46067.1 (hypothetical protein Csa_6G046450 [Cucumis sativus])

HSP 1 Score: 93.2 bits (230), Expect = 4.8e-16
Identity = 53/90 (58.89%), Postives = 57/90 (63.33%), Query Frame = 0 

Query: 1   MPGSYSSSYTNCGQHFLRLIFVKFSSVSVSDLPLSPFSLLVTQFGTSSELLISRLIVSVC 60
           +PG  S            ++F K  S  + DLPL  FSLLV QFGTSSE LISR IVSV 
Sbjct: 95  IPGGLSQMCCTLYARIFFILFHKLRSAFLEDLPLLLFSLLVAQFGTSSEPLISRFIVSVW 154

Query: 61  FSLSRRFKAYFFVNLFCREGPIQDLYLTAN 91
           F LSRRFK YFF NLFCR G  QDLYL AN
Sbjct: 155 FLLSRRFKVYFFGNLFCRGGHFQDLYLIAN 184

[Close]
BLAST of Cla97C08G151340 vs. TrEMBL
Match: tr|A0A0A0KCH0|A0A0A0KCH0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G046450 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.2e-16
Identity = 53/90 (58.89%), Postives = 57/90 (63.33%), Query Frame = 0 

Query: 1   MPGSYSSSYTNCGQHFLRLIFVKFSSVSVSDLPLSPFSLLVTQFGTSSELLISRLIVSVC 60
           +PG  S            ++F K  S  + DLPL  FSLLV QFGTSSE LISR IVSV 
Sbjct: 95  IPGGLSQMCCTLYARIFFILFHKLRSAFLEDLPLLLFSLLVAQFGTSSEPLISRFIVSVW 154

Query: 61  FSLSRRFKAYFFVNLFCREGPIQDLYLTAN 91
           F LSRRFK YFF NLFCR G  QDLYL AN
Sbjct: 155 FLLSRRFKVYFFGNLFCRGGHFQDLYLIAN 184

The following BLAST results are available for this feature:
BLAST of Cla97C08G151340 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN46067.14.8e-1658.89hypothetical protein Csa_6G046450 [Cucumis sativus][more]
BLAST of Cla97C08G151340 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KCH0|A0A0A0KCH0_CUCSA3.2e-1658.89Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G046450 PE=4 SV=1[more]
BLAST of Cla97C08G151340 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C08G151340 vs. TAIR10
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C08G151340.1Cla97C08G151340.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C08G151340Csa6G046450Cucumber (Chinese Long) v2cuwmbB488
Cla97C08G151340CsGy6G004190Cucumber (Gy14) v2cgybwmbB464
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C08G151340Watermelon (97103) v2wmbwmbB143
Cla97C08G151340Silver-seed gourdcarwmbB0064
Cla97C08G151340Silver-seed gourdcarwmbB0864
Cla97C08G151340Cucumber (Gy14) v1cgywmbB629
Cla97C08G151340Cucurbita maxima (Rimu)cmawmbB317
Cla97C08G151340Cucurbita maxima (Rimu)cmawmbB788
Cla97C08G151340Cucurbita moschata (Rifu)cmowmbB300
Cla97C08G151340Cucurbita moschata (Rifu)cmowmbB762
Cla97C08G151340Wild cucumber (PI 183967)cpiwmbB514
Cla97C08G151340Cucumber (Chinese Long) v3cucwmbB506
Cla97C08G151340Bottle gourd (USVL1VR-Ls)lsiwmbB448
Cla97C08G151340Melon (DHL92) v3.6.1medwmbB295
Cla97C08G151340Melon (DHL92) v3.5.1mewmbB307
Cla97C08G151340Watermelon (97103) v1wmwmbB100
Cla97C08G151340Watermelon (Charleston Gray)wcgwmbB336
Cla97C08G151340Wax gourdwgowmbB329
Cla97C08G151340Wax gourdwgowmbB541