Cla97C08G149900 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C08G149900
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	UPF0544 protein C5orf45 homolog
Location	Cla97Chr08 : 18330634 .. 18330936 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAAGAACAGTCATAAAATTGGAGATGAGATTCAGAACTGGGAGTTGCCATCGGACATTGAGGCATCAAAATGGAGTAGTAAAGGTATGTCAAAAGATGATGAAAATGCAAGGACGAAAAGTTGCATATTAGCAAAGGCAAGAGGATCTTCTAAGTGGAGTGAATACATAACGGAAGAAGAGAACTGTGGAGGCGGAAATGGAGAAAATAGGGCAGCAGAAGAGGGCATAGATATCTTGAAGATGATGATGATAAATGATGAAATTGTTGAAGACGACATCCACCCTGATTTCAAATGA

mRNA sequence

ATGAGCAAGAACAGTCATAAAATTGGAGATGAGATTCAGAACTGGGAGTTGCCATCGGACATTGAGGCATCAAAATGGAGTAGTAAAGGTATGTCAAAAGATGATGAAAATGCAAGGACGAAAAGTTGCATATTAGCAAAGGCAAGAGGATCTTCTAAGTGGAGTGAATACATAACGGAAGAAGAGAACTGTGGAGGCGGAAATGGAGAAAATAGGGCAGCAGAAGAGGGCATAGATATCTTGAAGATGATGATGATAAATGATGAAATTGTTGAAGACGACATCCACCCTGATTTCAAATGA

Coding sequence (CDS)

ATGAGCAAGAACAGTCATAAAATTGGAGATGAGATTCAGAACTGGGAGTTGCCATCGGACATTGAGGCATCAAAATGGAGTAGTAAAGGTATGTCAAAAGATGATGAAAATGCAAGGACGAAAAGTTGCATATTAGCAAAGGCAAGAGGATCTTCTAAGTGGAGTGAATACATAACGGAAGAAGAGAACTGTGGAGGCGGAAATGGAGAAAATAGGGCAGCAGAAGAGGGCATAGATATCTTGAAGATGATGATGATAAATGATGAAATTGTTGAAGACGACATCCACCCTGATTTCAAATGA

Protein sequence

MSKNSHKIGDEIQNWELPSDIEASKWSSKGMSKDDENARTKSCILAKARGSSKWSEYITEEENCGGGNGENRAAEEGIDILKMMMINDEIVEDDIHPDFK

Homology

[Close]

BLAST of Cla97C08G149900 vs. NCBI nr
Match: XP_022133808.1 (uncharacterized protein LOC111006279 [Momordica charantia])

HSP 1 Score: 102.1 bits (253), Expect = 1.2e-18
Identity = 59/93 (63.44%), Postives = 69/93 (74.19%), Query Frame = 0


Query: 10  DEIQNWELPSDIEASKWSSKGMSKDDENARTKSCILAKARG--SSKWSEYITEEENCGGG 69
           DEI+NWE P     SKW  + +S+D+E ARTK+CI+AK RG  SSKWSEYITEE+N    
Sbjct: 233 DEIRNWESP-----SKW-KQSISEDEEKARTKACIMAKIRGPSSSKWSEYITEEDN---- 292

Query: 70  NGENRAAEEGIDILKMMMINDEIVEDDIHPDFK 101
           NGEN A E  +DILK  M NDE+VEDDIHPDFK
Sbjct: 293 NGENMATEPSMDILK-TMTNDEMVEDDIHPDFK 314

[Close]

BLAST of Cla97C08G149900 vs. NCBI nr
Match: XP_004141004.1 (PREDICTED: UPF0544 protein C5orf45 homolog [Cucumis sativus] >KGN46102.1 hypothetical protein Csa_6G052770 [Cucumis sativus])

HSP 1 Score: 101.3 bits (251), Expect = 2.0e-18
Identity = 70/140 (50.00%), Postives = 74/140 (52.86%), Query Frame = 0


Query: 10  DEIQNWELPSDIEASKWSSKGMSKDDENA------------------------------- 69
           DEI+NWE PS I ASK  SKG   DDE                                 
Sbjct: 173 DEIRNWESPSAIHASK-LSKG---DDEQTLSTAKYLSAPFQXXXXXXXXXXXXXXXXXXX 232

Query: 70  -----------------RTKSCILAKARG-SSKWSEYITEEENCGGGNGENRAAEEGIDI 101
                            RTKSCIL K RG SSKWSEYITEEENCGG N EN A EEG+D+
Sbjct: 233 XXXXXXXXXXXXXXXXLRTKSCILGKVRGASSKWSEYITEEENCGGRNEENMAREEGMDV 292

[Close]

BLAST of Cla97C08G149900 vs. NCBI nr
Match: XP_008456719.1 (PREDICTED: UPF0544 protein C5orf45 homolog [Cucumis melo])

HSP 1 Score: 99.8 bits (247), Expect = 5.7e-18
Identity = 70/140 (50.00%), Postives = 72/140 (51.43%), Query Frame = 0


Query: 10  DEIQNWELPSDIEASKWSSKGMSKDDENA------------------------------- 69
           DEIQNWE PS I  SK  SKG   DDE                                 
Sbjct: 172 DEIQNWESPSAIHTSK-LSKG---DDEQTFSTAKYLSAPFQDKKMSXXXXXXXXXXXXXX 231

Query: 70  -----------------RTKSCILAKARG-SSKWSEYITEEENCGGGNGENRAAEEGIDI 101
                            RTKSCIL K RG SSKWSEYITEEENCGG N EN A E+G+DI
Sbjct: 232 XXXXXXXXXXXXXXXXXRTKSCILGKVRGASSKWSEYITEEENCGGRNEENMAREQGMDI 291

[Close]

BLAST of Cla97C08G149900 vs. NCBI nr
Match: XP_022939430.1 (MRN complex-interacting protein isoform X2 [Cucurbita moschata])

HSP 1 Score: 99.0 bits (245), Expect = 9.8e-18
Identity = 56/83 (67.47%), Postives = 64/83 (77.11%), Query Frame = 0


Query: 19  SDIEASKWSSKGMSKDDENARTKSCILAKARG-SSKWSEYITEEENCGGGNGENRAAEEG 78
           S I+ASKW  KG+SKDDE+A    CILAK  G SSKWSEYITE++NCGG  GEN   E+ 
Sbjct: 172 SAIQASKW-RKGVSKDDESA----CILAKVGGPSSKWSEYITEDDNCGGRKGENMGTEQD 231

Query: 79  IDILKMMMINDEIVEDDIHPDFK 101
           +D LK M+ NDEIVEDDIHPDFK
Sbjct: 232 MDTLK-MITNDEIVEDDIHPDFK 248

[Close]

BLAST of Cla97C08G149900 vs. NCBI nr
Match: XP_022939429.1 (MRN complex-interacting protein isoform X1 [Cucurbita moschata])

HSP 1 Score: 96.7 bits (239), Expect = 4.9e-17
Identity = 56/92 (60.87%), Postives = 63/92 (68.48%), Query Frame = 0


Query: 10  DEIQNWELPSDIEASKWSSKGMSKDDENARTKSCILAKARG-SSKWSEYITEEENCGGGN 69
           DEI+NWE PS            SKDDE+A    CILAK  G SSKWSEYITE++NCGG  
Sbjct: 202 DEIRNWESPS------------SKDDESA----CILAKVGGPSSKWSEYITEDDNCGGRK 261

Query: 70  GENRAAEEGIDILKMMMINDEIVEDDIHPDFK 101
           GEN   E+ +D LK M+ NDEIVEDDIHPDFK
Sbjct: 262 GENMGTEQDMDTLK-MITNDEIVEDDIHPDFK 276

[Close]

BLAST of Cla97C08G149900 vs. TrEMBL
Match: tr|A0A0A0KCJ3|A0A0A0KCJ3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G052770 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.3e-18
Identity = 70/140 (50.00%), Postives = 74/140 (52.86%), Query Frame = 0


Query: 10  DEIQNWELPSDIEASKWSSKGMSKDDENA------------------------------- 69
           DEI+NWE PS I ASK  SKG   DDE                                 
Sbjct: 173 DEIRNWESPSAIHASK-LSKG---DDEQTLSTAKYLSAPFQXXXXXXXXXXXXXXXXXXX 232

Query: 70  -----------------RTKSCILAKARG-SSKWSEYITEEENCGGGNGENRAAEEGIDI 101
                            RTKSCIL K RG SSKWSEYITEEENCGG N EN A EEG+D+
Sbjct: 233 XXXXXXXXXXXXXXXXLRTKSCILGKVRGASSKWSEYITEEENCGGRNEENMAREEGMDV 292

[Close]

BLAST of Cla97C08G149900 vs. TrEMBL
Match: tr|A0A1S3C3H7|A0A1S3C3H7_CUCME (UPF0544 protein C5orf45 homolog OS=Cucumis melo OX=3656 GN=LOC103496578 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 3.8e-18
Identity = 70/140 (50.00%), Postives = 72/140 (51.43%), Query Frame = 0


Query: 10  DEIQNWELPSDIEASKWSSKGMSKDDENA------------------------------- 69
           DEIQNWE PS I  SK  SKG   DDE                                 
Sbjct: 172 DEIQNWESPSAIHTSK-LSKG---DDEQTFSTAKYLSAPFQDKKMSXXXXXXXXXXXXXX 231

Query: 70  -----------------RTKSCILAKARG-SSKWSEYITEEENCGGGNGENRAAEEGIDI 101
                            RTKSCIL K RG SSKWSEYITEEENCGG N EN A E+G+DI
Sbjct: 232 XXXXXXXXXXXXXXXXXRTKSCILGKVRGASSKWSEYITEEENCGGRNEENMAREQGMDI 291

The following BLAST results are available for this feature:

BLAST of Cla97C08G149900 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022133808.1	1.2e-18	63.44	uncharacterized protein LOC111006279 [Momordica charantia]	[more]
XP_004141004.1	2.0e-18	50.00	PREDICTED: UPF0544 protein C5orf45 homolog [Cucumis sativus] >KGN46102.1 hypothe...	[more]
XP_008456719.1	5.7e-18	50.00	PREDICTED: UPF0544 protein C5orf45 homolog [Cucumis melo]	[more]
XP_022939430.1	9.8e-18	67.47	MRN complex-interacting protein isoform X2 [Cucurbita moschata]	[more]
XP_022939429.1	4.9e-17	60.87	MRN complex-interacting protein isoform X1 [Cucurbita moschata]	[more]

BLAST of Cla97C08G149900 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KCJ3\|A0A0A0KCJ3_CUCSA	1.3e-18	50.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G052770 PE=4 SV=1	[more]
tr\|A0A1S3C3H7\|A0A1S3C3H7_CUCME	3.8e-18	50.00	UPF0544 protein C5orf45 homolog OS=Cucumis melo OX=3656 GN=LOC103496578 PE=4 SV=...	[more]

BLAST of Cla97C08G149900 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C08G149900 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006730	one-carbon metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0004089	carbonate dehydratase activity
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C08G149900.1	Cla97C08G149900.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..38

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C08G149900	Cla013798	Watermelon (97103) v1	wmwmbB100
Cla97C08G149900	Csa6G052770	Cucumber (Chinese Long) v2	cuwmbB492
Cla97C08G149900	ClCG08G007220	Watermelon (Charleston Gray)	wcgwmbB336
Cla97C08G149900	CSPI06G04540	Wild cucumber (PI 183967)	cpiwmbB518
Cla97C08G149900	Cucsa.364040	Cucumber (Gy14) v1	cgywmbB631
Cla97C08G149900	Lsi08G005860	Bottle gourd (USVL1VR-Ls)	lsiwmbB449
Cla97C08G149900	CsGy6G004520	Cucumber (Gy14) v2	cgybwmbB468
Cla97C08G149900	MELO3C019965.2	Melon (DHL92) v3.6.1	medwmbB299
Cla97C08G149900	CsaV3_6G004890	Cucumber (Chinese Long) v3	cucwmbB510
Cla97C08G149900	Bhi04G001255	Wax gourd	wgowmbB337

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C08G149900	Silver-seed gourd	carwmbB0063
Cla97C08G149900	Silver-seed gourd	carwmbB0065
Cla97C08G149900	Silver-seed gourd	carwmbB0865
Cla97C08G149900	Cucumber (Gy14) v1	cgywmbB626
Cla97C08G149900	Cucurbita maxima (Rimu)	cmawmbB318
Cla97C08G149900	Cucurbita maxima (Rimu)	cmawmbB319
Cla97C08G149900	Cucurbita maxima (Rimu)	cmawmbB786
Cla97C08G149900	Cucurbita maxima (Rimu)	cmawmbB791
Cla97C08G149900	Cucurbita moschata (Rifu)	cmowmbB301
Cla97C08G149900	Cucurbita moschata (Rifu)	cmowmbB302
Cla97C08G149900	Cucurbita moschata (Rifu)	cmowmbB760
Cla97C08G149900	Cucurbita moschata (Rifu)	cmowmbB765
Cla97C08G149900	Bottle gourd (USVL1VR-Ls)	lsiwmbB445
Cla97C08G149900	Melon (DHL92) v3.5.1	mewmbB310
Cla97C08G149900	Wax gourd	wgowmbB325