Cla97C08G149560 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C08G149560
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Unknown protein
Location	Cla97Chr08 : 17937904 .. 17938236 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCAGCATTGGCGGCTTATCTATTTTTTGCCATTTTGGTGGCATCCTTCTCTCCGAGCTCGCCCTCGAAAGTTGCGGCCGCTGCCACAAGCTACGGTATTTCTTTCCTTCCACTGCTGCCACGTCCGCTCTTATTCCGTCACGACAGCAGCTATCTCCCACCGTTGCCAGCGGCGAAGGAGTATCCAGCGAAACCCCTTCGTCGTGTAAATGGTGAGCGCAAAAACAAGTGTACCAAAGCACACAGAAATGGAGATAAAGTTACAAAGCCGACCAAGGATCCGTGGCCGAAGTGCTCCGTTCGCAAATCGCCACCGCCTCCATTCTAG

mRNA sequence

ATGGCGTCAGCATTGGCGGCTTATCTATTTTTTGCCATTTTGGTGGCATCCTTCTCTCCGAGCTCGCCCTCGAAAGTTGCGGCCGCTGCCACAAGCTACGGTATTTCTTTCCTTCCACTGCTGCCACGTCCGCTCTTATTCCGTCACGACAGCAGCTATCTCCCACCGTTGCCAGCGGCGAAGGAGTATCCAGCGAAACCCCTTCGTCGTGTAAATGGTGAGCGCAAAAACAAGTGTACCAAAGCACACAGAAATGGAGATAAAGTTACAAAGCCGACCAAGGATCCGTGGCCGAAGTGCTCCGTTCGCAAATCGCCACCGCCTCCATTCTAG

Coding sequence (CDS)

ATGGCGTCAGCATTGGCGGCTTATCTATTTTTTGCCATTTTGGTGGCATCCTTCTCTCCGAGCTCGCCCTCGAAAGTTGCGGCCGCTGCCACAAGCTACGGTATTTCTTTCCTTCCACTGCTGCCACGTCCGCTCTTATTCCGTCACGACAGCAGCTATCTCCCACCGTTGCCAGCGGCGAAGGAGTATCCAGCGAAACCCCTTCGTCGTGTAAATGGTGAGCGCAAAAACAAGTGTACCAAAGCACACAGAAATGGAGATAAAGTTACAAAGCCGACCAAGGATCCGTGGCCGAAGTGCTCCGTTCGCAAATCGCCACCGCCTCCATTCTAG

Protein sequence

MASALAAYLFFAILVASFSPSSPSKVAAAATSYGISFLPLLPRPLLFRHDSSYLPPLPAAKEYPAKPLRRVNGERKNKCTKAHRNGDKVTKPTKDPWPKCSVRKSPPPPF

Homology

[Close]

BLAST of Cla97C08G149560 vs. NCBI nr
Match: KGN46156.1 (hypothetical protein Csa_6G058700 [Cucumis sativus])

HSP 1 Score: 138.3 bits (347), Expect = 1.6e-29
Identity = 76/106 (71.70%), Postives = 83/106 (78.30%), Query Frame = 0


Query: 7   AYLFFAIL--VASFSPSSPSKVAAAATSYGISFLPLLPRPLLFRHDSSYLPPLPAAKEYP 66
           AYLF AIL  VASFSPSS S  A AA SYGI + P LPRPLLF +D S LPP PAA+EYP
Sbjct: 6   AYLFLAILLAVASFSPSSLSIAATAAPSYGIPYPPPLPRPLLFHNDHSSLPPSPAAEEYP 65

Query: 67  AKPLRRVNGERKNKCTKAHRNGDKVTKPTKDPWPKCSVRKSPPPPF 111
           AK  RRVNGERK+KC++A RNG+K  KP KDPWPKC V KSPPPPF
Sbjct: 66  AKSPRRVNGERKDKCSEAPRNGNKDAKPNKDPWPKCPVPKSPPPPF 111

[Close]

BLAST of Cla97C08G149560 vs. TrEMBL
Match: tr|A0A0A0KEF9|A0A0A0KEF9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G058700 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.1e-29
Identity = 76/106 (71.70%), Postives = 83/106 (78.30%), Query Frame = 0


Query: 7   AYLFFAIL--VASFSPSSPSKVAAAATSYGISFLPLLPRPLLFRHDSSYLPPLPAAKEYP 66
           AYLF AIL  VASFSPSS S  A AA SYGI + P LPRPLLF +D S LPP PAA+EYP
Sbjct: 6   AYLFLAILLAVASFSPSSLSIAATAAPSYGIPYPPPLPRPLLFHNDHSSLPPSPAAEEYP 65

Query: 67  AKPLRRVNGERKNKCTKAHRNGDKVTKPTKDPWPKCSVRKSPPPPF 111
           AK  RRVNGERK+KC++A RNG+K  KP KDPWPKC V KSPPPPF
Sbjct: 66  AKSPRRVNGERKDKCSEAPRNGNKDAKPNKDPWPKCPVPKSPPPPF 111

The following BLAST results are available for this feature:

BLAST of Cla97C08G149560 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN46156.1	1.6e-29	71.70	hypothetical protein Csa_6G058700 [Cucumis sativus]	[more]

BLAST of Cla97C08G149560 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KEF9\|A0A0A0KEF9_CUCSA	1.1e-29	71.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G058700 PE=4 SV=1	[more]

BLAST of Cla97C08G149560 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C08G149560 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C08G149560.1	Cla97C08G149560.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..110

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C08G149560	Cla013831	Watermelon (97103) v1	wmwmbB100
Cla97C08G149560	Csa6G058700	Cucumber (Chinese Long) v2	cuwmbB500
Cla97C08G149560	ClCG08G006860	Watermelon (Charleston Gray)	wcgwmbB336
Cla97C08G149560	CSPI06G05040	Wild cucumber (PI 183967)	cpiwmbB526
Cla97C08G149560	Lsi08G005430	Bottle gourd (USVL1VR-Ls)	lsiwmbB445
Cla97C08G149560	CsGy6G005000	Cucumber (Gy14) v2	cgybwmbB475
Cla97C08G149560	CsaV3_6G005390	Cucumber (Chinese Long) v3	cucwmbB519
Cla97C08G149560	Bhi04G001380	Wax gourd	wgowmbB325

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C08G149560	Melon (DHL92) v3.6.1	medwmbB294
Cla97C08G149560	Melon (DHL92) v3.5.1	mewmbB308
Cla97C08G149560	Silver-seed gourd	carwmbB0063
Cla97C08G149560	Silver-seed gourd	carwmbB0862
Cla97C08G149560	Cucurbita maxima (Rimu)	cmawmbB319
Cla97C08G149560	Cucurbita maxima (Rimu)	cmawmbB786
Cla97C08G149560	Cucurbita moschata (Rifu)	cmowmbB302
Cla97C08G149560	Cucurbita moschata (Rifu)	cmowmbB760