Cla97C08G147820 (gene) Watermelon (97103) v2

NameCla97C08G147820
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
Descriptionglial fibrillary acidic protein-like
LocationCla97Chr08 : 14454343 .. 14454657 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTCGCAATGCACGAGAGGTGGTGACAGATGACTATGCTCAGCTGAAGAAGGAATATCAGGAAATGTCAGCAGATTTTGCAGTATGGAGAGATGAGTATAGTATGTTAAGACGCGATTACGATAATGTCAGAGGGCAGGTAGAACAAGGAGCCGAGAAATTAAGGCAGATGGCAAAGATGGCAGATCAATTCGCAGCACAGGTTACAACCCTCCAACAAGGCATCGTACCCACGCGACCTGACAGCAAGGAGTTGTCTCGTTTTCTAGGGATCATAAGGCAATACCTTGGGCGTTTTGGGTGCTATCATTAG

mRNA sequence

ATGTGTCGCAATGCACGAGAGGTGGTGACAGATGACTATGCTCAGCTGAAGAAGGAATATCAGGAAATGTCAGCAGATTTTGCAGTATGGAGAGATGAGTATAGTATGTTAAGACGCGATTACGATAATGTCAGAGGGCAGGTAGAACAAGGAGCCGAGAAATTAAGGCAGATGGCAAAGATGGCAGATCAATTCGCAGCACAGGTTACAACCCTCCAACAAGGCATCGTACCCACGCGACCTGACAGCAAGGAGTTGTCTCGTTTTCTAGGGATCATAAGGCAATACCTTGGGCGTTTTGGGTGCTATCATTAG

Coding sequence (CDS)

ATGTGTCGCAATGCACGAGAGGTGGTGACAGATGACTATGCTCAGCTGAAGAAGGAATATCAGGAAATGTCAGCAGATTTTGCAGTATGGAGAGATGAGTATAGTATGTTAAGACGCGATTACGATAATGTCAGAGGGCAGGTAGAACAAGGAGCCGAGAAATTAAGGCAGATGGCAAAGATGGCAGATCAATTCGCAGCACAGGTTACAACCCTCCAACAAGGCATCGTACCCACGCGACCTGACAGCAAGGAGTTGTCTCGTTTTCTAGGGATCATAAGGCAATACCTTGGGCGTTTTGGGTGCTATCATTAG

Protein sequence

MCRNAREVVTDDYAQLKKEYQEMSADFAVWRDEYSMLRRDYDNVRGQVEQGAEKLRQMAKMADQFAAQVTTLQQGIVPTRPDSKELSRFLGIIRQYLGRFGCYH
BLAST of Cla97C08G147820 vs. NCBI nr
Match: XP_008464352.1 (PREDICTED: glial fibrillary acidic protein-like, partial [Cucumis melo])

HSP 1 Score: 70.5 bits (171), Expect = 3.9e-09
Identity = 37/74 (50.00%), Postives = 45/74 (60.81%), Query Frame = 0

Query: 1   MCRNAREVVTDDYAQLKKEYQEMSADXXXXXXXXXXXXXXXXXXXXXXEQGAEKLRQMAK 60
           +CR AREV+TDDYAQL ++YQEMS D                      E+GAEKLRQMA 
Sbjct: 159 ICRKAREVITDDYAQLMEKYQEMSIDFMMWKDEYETLRRKYDDAIRRMERGAEKLRQMAS 218

Query: 61  MADQFAAQVTTLQQ 75
           +ADQF+ Q  TL+Q
Sbjct: 219 VADQFSVQARTLRQ 232

BLAST of Cla97C08G147820 vs. TrEMBL
Match: tr|A0A1S3CLQ1|A0A1S3CLQ1_CUCME (glial fibrillary acidic protein-like OS=Cucumis melo OX=3656 GN=LOC103502260 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.6e-09
Identity = 37/74 (50.00%), Postives = 45/74 (60.81%), Query Frame = 0

Query: 1   MCRNAREVVTDDYAQLKKEYQEMSADXXXXXXXXXXXXXXXXXXXXXXEQGAEKLRQMAK 60
           +CR AREV+TDDYAQL ++YQEMS D                      E+GAEKLRQMA 
Sbjct: 159 ICRKAREVITDDYAQLMEKYQEMSIDFMMWKDEYETLRRKYDDAIRRMERGAEKLRQMAS 218

Query: 61  MADQFAAQVTTLQQ 75
           +ADQF+ Q  TL+Q
Sbjct: 219 VADQFSVQARTLRQ 232

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008464352.13.9e-0950.00PREDICTED: glial fibrillary acidic protein-like, partial [Cucumis melo][more]
Match NameE-valueIdentityDescription
tr|A0A1S3CLQ1|A0A1S3CLQ1_CUCME2.6e-0950.00glial fibrillary acidic protein-like OS=Cucumis melo OX=3656 GN=LOC103502260 PE=... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C08G147820.1Cla97C08G147820.1mRNA


Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 6..33

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None