Cla97C08G147820 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C08G147820
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	glial fibrillary acidic protein-like
Location	Cla97Chr08 : 14454343 .. 14454657 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTCGCAATGCACGAGAGGTGGTGACAGATGACTATGCTCAGCTGAAGAAGGAATATCAGGAAATGTCAGCAGATTTTGCAGTATGGAGAGATGAGTATAGTATGTTAAGACGCGATTACGATAATGTCAGAGGGCAGGTAGAACAAGGAGCCGAGAAATTAAGGCAGATGGCAAAGATGGCAGATCAATTCGCAGCACAGGTTACAACCCTCCAACAAGGCATCGTACCCACGCGACCTGACAGCAAGGAGTTGTCTCGTTTTCTAGGGATCATAAGGCAATACCTTGGGCGTTTTGGGTGCTATCATTAG

mRNA sequence

ATGTGTCGCAATGCACGAGAGGTGGTGACAGATGACTATGCTCAGCTGAAGAAGGAATATCAGGAAATGTCAGCAGATTTTGCAGTATGGAGAGATGAGTATAGTATGTTAAGACGCGATTACGATAATGTCAGAGGGCAGGTAGAACAAGGAGCCGAGAAATTAAGGCAGATGGCAAAGATGGCAGATCAATTCGCAGCACAGGTTACAACCCTCCAACAAGGCATCGTACCCACGCGACCTGACAGCAAGGAGTTGTCTCGTTTTCTAGGGATCATAAGGCAATACCTTGGGCGTTTTGGGTGCTATCATTAG

Coding sequence (CDS)

ATGTGTCGCAATGCACGAGAGGTGGTGACAGATGACTATGCTCAGCTGAAGAAGGAATATCAGGAAATGTCAGCAGATTTTGCAGTATGGAGAGATGAGTATAGTATGTTAAGACGCGATTACGATAATGTCAGAGGGCAGGTAGAACAAGGAGCCGAGAAATTAAGGCAGATGGCAAAGATGGCAGATCAATTCGCAGCACAGGTTACAACCCTCCAACAAGGCATCGTACCCACGCGACCTGACAGCAAGGAGTTGTCTCGTTTTCTAGGGATCATAAGGCAATACCTTGGGCGTTTTGGGTGCTATCATTAG

Protein sequence

MCRNAREVVTDDYAQLKKEYQEMSADFAVWRDEYSMLRRDYDNVRGQVEQGAEKLRQMAKMADQFAAQVTTLQQGIVPTRPDSKELSRFLGIIRQYLGRFGCYH

Homology

[Close]

BLAST of Cla97C08G147820 vs. NCBI nr
Match: XP_008464352.1 (PREDICTED: glial fibrillary acidic protein-like, partial [Cucumis melo])

HSP 1 Score: 70.5 bits (171), Expect = 3.9e-09
Identity = 37/74 (50.00%), Postives = 45/74 (60.81%), Query Frame = 0


Query: 1   MCRNAREVVTDDYAQLKKEYQEMSADXXXXXXXXXXXXXXXXXXXXXXEQGAEKLRQMAK 60
           +CR AREV+TDDYAQL ++YQEMS D                      E+GAEKLRQMA 
Sbjct: 159 ICRKAREVITDDYAQLMEKYQEMSIDFMMWKDEYETLRRKYDDAIRRMERGAEKLRQMAS 218

Query: 61  MADQFAAQVTTLQQ 75
           +ADQF+ Q  TL+Q
Sbjct: 219 VADQFSVQARTLRQ 232

[Close]

BLAST of Cla97C08G147820 vs. TrEMBL
Match: tr|A0A1S3CLQ1|A0A1S3CLQ1_CUCME (glial fibrillary acidic protein-like OS=Cucumis melo OX=3656 GN=LOC103502260 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.6e-09
Identity = 37/74 (50.00%), Postives = 45/74 (60.81%), Query Frame = 0


Query: 1   MCRNAREVVTDDYAQLKKEYQEMSADXXXXXXXXXXXXXXXXXXXXXXEQGAEKLRQMAK 60
           +CR AREV+TDDYAQL ++YQEMS D                      E+GAEKLRQMA 
Sbjct: 159 ICRKAREVITDDYAQLMEKYQEMSIDFMMWKDEYETLRRKYDDAIRRMERGAEKLRQMAS 218

Query: 61  MADQFAAQVTTLQQ 75
           +ADQF+ Q  TL+Q
Sbjct: 219 VADQFSVQARTLRQ 232

The following BLAST results are available for this feature:

BLAST of Cla97C08G147820 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464352.1	3.9e-09	50.00	PREDICTED: glial fibrillary acidic protein-like, partial [Cucumis melo]	[more]

BLAST of Cla97C08G147820 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CLQ1\|A0A1S3CLQ1_CUCME	2.6e-09	50.00	glial fibrillary acidic protein-like OS=Cucumis melo OX=3656 GN=LOC103502260 PE=...	[more]

BLAST of Cla97C08G147820 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C08G147820 vs. TAIR10


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C08G147820.1	Cla97C08G147820.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 6..33

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C08G147820	Wax gourd	wgowmbB332
Cla97C08G147820	Cucumber (Gy14) v2	cgybwmbB467
Cla97C08G147820	Cucumber (Gy14) v1	cgywmbB630
Cla97C08G147820	Cucurbita maxima (Rimu)	cmawmbB321
Cla97C08G147820	Cucurbita maxima (Rimu)	cmawmbB790
Cla97C08G147820	Cucurbita moschata (Rifu)	cmowmbB304
Cla97C08G147820	Cucurbita moschata (Rifu)	cmowmbB764
Cla97C08G147820	Wild cucumber (PI 183967)	cpiwmbB517
Cla97C08G147820	Cucumber (Chinese Long) v3	cucwmbB509
Cla97C08G147820	Cucumber (Chinese Long) v2	cuwmbB491
Cla97C08G147820	Bottle gourd (USVL1VR-Ls)	lsiwmbB445
Cla97C08G147820	Melon (DHL92) v3.6.1	medwmbB297
Cla97C08G147820	Melon (DHL92) v3.5.1	mewmbB309
Cla97C08G147820	Watermelon (Charleston Gray)	wcgwmbB336
Cla97C08G147820	Watermelon (97103) v1	wmwmbB102