Cla97C08G146050 (gene) Watermelon (97103) v2

Overview
NameCla97C08G146050
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionPolygalacturonase
LocationCla97Chr08 : 3885032 .. 3885289 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTCCATCTAAAGTCAAAATTAGTAAGGTTAGTTTCAAGAATATCAGAGGTACTTCTGGTAATGCACTCGCAGTAAAACTTGTTTGTAGTTCTAGTGTTCCATGCGAAAGTGTAGAGTTAGCTGACATTGACCTCACTTATAATGGAAGTGAAGGCCCTATTTTATCTCAATGTTCAAATGTGAAGCCTGTTGTTTCTGGAAAGCAAAACTCTCCTGCATGTTCTTCCCTTGCTTCCAAGGCCTCTCCACCAGCTTAA

mRNA sequence

ATTCCATCTAAAGTCAAAATTAGTAAGGTTAGTTTCAAGAATATCAGAGGTACTTCTGGTAATGCACTCGCAGTAAAACTTGTTTGTAGTTCTAGTGTTCCATGCGAAAGTGTAGAGTTAGCTGACATTGACCTCACTTATAATGGAAGTGAAGGCCCTATTTTATCTCAATGTTCAAATGTGAAGCCTGTTGTTTCTGGAAAGCAAAACTCTCCTGCATGTTCTTCCCTTGCTTCCAAGGCCTCTCCACCAGCTTAA

Coding sequence (CDS)

ATTCCATCTAAAGTCAAAATTAGTAAGGTTAGTTTCAAGAATATCAGAGGTACTTCTGGTAATGCACTCGCAGTAAAACTTGTTTGTAGTTCTAGTGTTCCATGCGAAAGTGTAGAGTTAGCTGACATTGACCTCACTTATAATGGAAGTGAAGGCCCTATTTTATCTCAATGTTCAAATGTGAAGCCTGTTGTTTCTGGAAAGCAAAACTCTCCTGCATGTTCTTCCCTTGCTTCCAAGGCCTCTCCACCAGCTTAA

Protein sequence

IPSKVKISKVSFKNIRGTSGNALAVKLVCSSSVPCESVELADIDLTYNGSEGPILSQCSNVKPVVSGKQNSPACSSLASKASPPA
Homology
[Close]
BLAST of Cla97C08G146050 vs. NCBI nr
Match: XP_022150984.1 (exopolygalacturonase-like [Momordica charantia])

HSP 1 Score: 140.2 bits (352), Expect = 3.3e-30
Identity = 69/84 (82.14%), Postives = 76/84 (90.48%), Query Frame = 0 

Query: 1   IPSKVKISKVSFKNIRGTSGNALAVKLVCSSSVPCESVELADIDLTYNGSEGPILSQCSN 60
           IPSKVKISKVSFKNIRG+S NALAVK++CSS  PCE VE+ADIDLTYNGSEGPI SQCSN
Sbjct: 322 IPSKVKISKVSFKNIRGSSANALAVKIICSSDFPCEGVEIADIDLTYNGSEGPITSQCSN 381

Query: 61  VKPVVSGKQNSPACSSLASKASPP 85
           VKP++SGKQN PACSS+A  ASPP
Sbjct: 382 VKPIISGKQNPPACSSVAPIASPP 405

[Close]
BLAST of Cla97C08G146050 vs. NCBI nr
Match: XP_011656283.1 (PREDICTED: exopolygalacturonase-like [Cucumis sativus] >XP_011656284.1 PREDICTED: exopolygalacturonase-like [Cucumis sativus])

HSP 1 Score: 129.4 bits (324), Expect = 5.7e-27
Identity = 67/85 (78.82%), Postives = 71/85 (83.53%), Query Frame = 0 

Query: 1   IPSKVKISKVSFKNIRGTSGNALAVKLVCSSSVPCESVELADIDLTYNGSEGPILSQCSN 60
           IPSKVKISKVSFKNIRGTSGNA AV LVCSSS PCE VELADIDLTY G+EGPI S C+N
Sbjct: 278 IPSKVKISKVSFKNIRGTSGNAQAVTLVCSSSNPCEGVELADIDLTYTGNEGPITSVCAN 337

Query: 61  VKPVVSGKQNSPACSSLASKASPPA 86
           VKP ++GKQN P CS LA KA  PA
Sbjct: 338 VKPTITGKQNPPICSPLAPKAQSPA 362

[Close]
BLAST of Cla97C08G146050 vs. NCBI nr
Match: XP_008459709.2 (PREDICTED: exopolygalacturonase-like [Cucumis melo])

HSP 1 Score: 127.9 bits (320), Expect = 1.7e-26
Identity = 65/82 (79.27%), Postives = 72/82 (87.80%), Query Frame = 0 

Query: 1   IPSKVKISKVSFKNIRGTSGNALAVKLVCSSSVPCESVELADIDLTYNGSEGPILSQCSN 60
           +PSKVKISKVSFKNIRGTSGNA AV LVCSSS PC+ VELADIDLTY+GSEGPI S+C+N
Sbjct: 313 VPSKVKISKVSFKNIRGTSGNAAAVTLVCSSSNPCDGVELADIDLTYSGSEGPITSRCAN 372

Query: 61  VKPVVSGKQNSPACSSLASKAS 83
           VKP VSGKQN PAC+S A+  S
Sbjct: 373 VKPTVSGKQNPPACTSPATPKS 394

[Close]
BLAST of Cla97C08G146050 vs. NCBI nr
Match: XP_022157387.1 (exopolygalacturonase-like [Momordica charantia] >XP_022159278.1 exopolygalacturonase-like [Momordica charantia])

HSP 1 Score: 126.3 bits (316), Expect = 4.9e-26
Identity = 65/84 (77.38%), Postives = 72/84 (85.71%), Query Frame = 0 

Query: 2   PSKVKISKVSFKNIRGTSGNALAVKLVCSSSVPCESVELADIDLTYNGSEGPILSQCSNV 61
           PSKVKISKVSFKN+RG+S NALAVKLVCS+ VPCE VE+ADIDLTYNG+EGPI SQC NV
Sbjct: 319 PSKVKISKVSFKNVRGSSANALAVKLVCSAEVPCEDVEVADIDLTYNGNEGPISSQCKNV 378

Query: 62  KPVVSGKQNSPACSSLASKASPPA 86
           KP++SGKQN  ACSS A    PPA
Sbjct: 379 KPIISGKQNPRACSSPA----PPA 398

[Close]
BLAST of Cla97C08G146050 vs. NCBI nr
Match: XP_022153637.1 (polygalacturonase-like [Momordica charantia])

HSP 1 Score: 123.2 bits (308), Expect = 4.1e-25
Identity = 58/83 (69.88%), Postives = 70/83 (84.34%), Query Frame = 0 

Query: 1   IPSKVKISKVSFKNIRGTSGNALAVKLVCSSSVPCESVELADIDLTYNGSEGPILSQCSN 60
           +PS +KISKVSFKNIRGTS   +AVK+VCS SVPCE VE+ADIDLTYNGS+GPI SQC+N
Sbjct: 302 VPSSIKISKVSFKNIRGTSATPIAVKIVCSKSVPCEGVEIADIDLTYNGSQGPIKSQCAN 361

Query: 61  VKPVVSGKQNSPACSSLASKASP 84
           VKPV++GKQN P C+ +A   +P
Sbjct: 362 VKPVITGKQNPPICAEVAPADAP 384

[Close]
BLAST of Cla97C08G146050 vs. TrEMBL
Match: tr|A0A1S3CC08|A0A1S3CC08_CUCME (exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103498752 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.1e-26
Identity = 65/82 (79.27%), Postives = 72/82 (87.80%), Query Frame = 0 

Query: 1   IPSKVKISKVSFKNIRGTSGNALAVKLVCSSSVPCESVELADIDLTYNGSEGPILSQCSN 60
           +PSKVKISKVSFKNIRGTSGNA AV LVCSSS PC+ VELADIDLTY+GSEGPI S+C+N
Sbjct: 313 VPSKVKISKVSFKNIRGTSGNAAAVTLVCSSSNPCDGVELADIDLTYSGSEGPITSRCAN 372

Query: 61  VKPVVSGKQNSPACSSLASKAS 83
           VKP VSGKQN PAC+S A+  S
Sbjct: 373 VKPTVSGKQNPPACTSPATPKS 394

[Close]
BLAST of Cla97C08G146050 vs. TrEMBL
Match: tr|A0A1S3BML3|A0A1S3BML3_CUCME (LOW QUALITY PROTEIN: exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103491497 PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 7.9e-25
Identity = 60/83 (72.29%), Postives = 68/83 (81.93%), Query Frame = 0 

Query: 1   IPSKVKISKVSFKNIRGTSGNALAVKLVCSSSVPCESVELADIDLTYNGSEGPILSQCSN 60
           +PSK+KISKVSFKNIRGTS   +AVKLVCS S PCE VE+ADIDLTY+GSEGPI SQC+N
Sbjct: 330 VPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCEGVEVADIDLTYSGSEGPIKSQCAN 389

Query: 61  VKPVVSGKQNSPACSSLASKASP 84
           VKPV+SGKQN P C+  A    P
Sbjct: 390 VKPVISGKQNPPICAEPAPAGGP 412

[Close]
BLAST of Cla97C08G146050 vs. TrEMBL
Match: tr|A0A1S3BMK3|A0A1S3BMK3_CUCME (exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103491670 PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 7.9e-25
Identity = 60/83 (72.29%), Postives = 68/83 (81.93%), Query Frame = 0 

Query: 1   IPSKVKISKVSFKNIRGTSGNALAVKLVCSSSVPCESVELADIDLTYNGSEGPILSQCSN 60
           +PSK+KISKVSFKNIRGTS   +AVKLVCS S PCE VE+ADIDLTY+GSEGPI SQC+N
Sbjct: 85  VPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCEGVEVADIDLTYSGSEGPIKSQCAN 144

Query: 61  VKPVVSGKQNSPACSSLASKASP 84
           VKPV+SGKQN P C+  A    P
Sbjct: 145 VKPVISGKQNPPICAEPAPAGGP 167

[Close]
BLAST of Cla97C08G146050 vs. TrEMBL
Match: tr|A0A1S3BN96|A0A1S3BN96_CUCME (exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103491498 PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 7.9e-25
Identity = 60/83 (72.29%), Postives = 68/83 (81.93%), Query Frame = 0 

Query: 1   IPSKVKISKVSFKNIRGTSGNALAVKLVCSSSVPCESVELADIDLTYNGSEGPILSQCSN 60
           +PSK+KISKVSFKNIRGTS   +AVKLVCS S PCE VE+ADIDLTY+GSEGPI SQC+N
Sbjct: 341 VPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCEGVEVADIDLTYSGSEGPIKSQCAN 400

Query: 61  VKPVVSGKQNSPACSSLASKASP 84
           VKPV+SGKQN P C+  A    P
Sbjct: 401 VKPVISGKQNPPICAEPAPAGGP 423

[Close]
BLAST of Cla97C08G146050 vs. TrEMBL
Match: tr|A0A1S3B3X5|A0A1S3B3X5_CUCME (exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103485719 PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 3.9e-24
Identity = 59/83 (71.08%), Postives = 67/83 (80.72%), Query Frame = 0 

Query: 1   IPSKVKISKVSFKNIRGTSGNALAVKLVCSSSVPCESVELADIDLTYNGSEGPILSQCSN 60
           +PSK+KISKVSFKNIRGTS   +AVK+VCS S PCE VE+ADIDLTY+GSEGPI SQC+N
Sbjct: 319 VPSKIKISKVSFKNIRGTSATPVAVKIVCSKSNPCEEVEVADIDLTYSGSEGPIKSQCAN 378

Query: 61  VKPVVSGKQNSPACSSLASKASP 84
           VKPV+SGKQN P C   A    P
Sbjct: 379 VKPVISGKQNPPICGEPAPLDGP 401

[Close]
BLAST of Cla97C08G146050 vs. Swiss-Prot
Match: sp|P24548|PGLR_OENOR (Exopolygalacturonase (Fragment) OS=Oenothera organensis OX=3945 PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 7.2e-21
Identity = 50/82 (60.98%), Postives = 59/82 (71.95%), Query Frame = 0 

Query: 1   IPSKVKISKVSFKNIRGTSGNALAVKLVCSSSVPCESVELADIDLTYNGSEGPILSQCSN 60
           +PS VK+SK+SFKNI+GTS    AVKLVCS S PC  VELADIDLTY+G  GP  S C N
Sbjct: 281 VPSSVKLSKISFKNIKGTSTTKEAVKLVCSKSFPCNGVELADIDLTYSGKGGPATSVCEN 340

Query: 61  VKPVVSGKQNSPACSSLASKAS 83
           +KP + GKQ    CS  A+KA+
Sbjct: 341 IKPTIKGKQIPAICSGSAAKAA 362

[Close]
BLAST of Cla97C08G146050 vs. Swiss-Prot
Match: sp|W8P8Q3|SALK6_KALTU (Probable galacturan 1,4-alpha-galacturonidase SALK6 OS=Kali turgidum OX=151250 PE=1 SV=3)

HSP 1 Score: 99.4 bits (246), Expect = 2.1e-20
Identity = 50/82 (60.98%), Postives = 65/82 (79.27%), Query Frame = 0 

Query: 2   PSKVKISKVSFKNIRGTSGNALAVKLVCSSSVPCESVELADIDLTYNGSEGPILSQCSNV 61
           PSKVK+SK+SFKN+ G + +A  VKL+CSS+VPC+ VELADIDLT+ G  G  +SQC NV
Sbjct: 322 PSKVKLSKISFKNVHGAAKSAEVVKLLCSSAVPCDGVELADIDLTFPG--GAAVSQCKNV 381

Query: 62  KPVVSGKQNSPACSSLASKASP 84
           KP+V+GKQN  AC + A+ A+P
Sbjct: 382 KPIVTGKQNPVACGAPATPAAP 401

[Close]
BLAST of Cla97C08G146050 vs. Swiss-Prot
Match: sp|Q05967|PGLR_TOBAC (Polygalacturonase OS=Nicotiana tabacum OX=4097 GN=PG1 PE=2 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.3e-19
Identity = 46/82 (56.10%), Postives = 61/82 (74.39%), Query Frame = 0 

Query: 1   IPSKVKISKVSFKNIRGTSGNALAVKLVCSSSVPCESVELADIDLTYNGSEGPILSQCSN 60
           +PS+VKISKVSF+NI+GTS    AV L+ S  VPCE +E+ DID+TY+G EGP  S C N
Sbjct: 315 LPSQVKISKVSFQNIKGTSRTQDAVSLLRSKGVPCEGIEVGDIDITYSGKEGPAKSSCEN 374

Query: 61  VKPVVSGKQNSPACSSLASKAS 83
           +KP + GKQN P C++ A+ +S
Sbjct: 375 IKPSLKGKQNPPVCTASAASSS 396

[Close]
BLAST of Cla97C08G146050 vs. Swiss-Prot
Match: sp|P49063|PGLR2_ARATH (Exopolygalacturonase clone GBGA483 OS=Arabidopsis thaliana OX=3702 GN=At3g07850 PE=2 SV=2)

HSP 1 Score: 90.9 bits (224), Expect = 7.4e-18
Identity = 41/78 (52.56%), Postives = 59/78 (75.64%), Query Frame = 0 

Query: 1   IPSKVKISKVSFKNIRGTSGNALAVKLVCSSSVPCESVELADIDLTYNGSEGPILSQCSN 60
           +PS+VK+S V+ K I+GTS   +AVKL+CS  VPC ++ L+DI+L +NG EGP +S CSN
Sbjct: 363 VPSQVKLSDVTIKGIKGTSATKVAVKLMCSKGVPCTNIALSDINLVHNGKEGPAVSACSN 422

Query: 61  VKPVVSGKQNSPACSSLA 79
           +KP++SGK    AC+ +A
Sbjct: 423 IKPILSGKLVPAACTEVA 440

[Close]
BLAST of Cla97C08G146050 vs. Swiss-Prot
Match: sp|Q39786|PGLR_GOSHI (Polygalacturonase OS=Gossypium hirsutum OX=3635 GN=G9 PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.8e-17
Identity = 46/78 (58.97%), Postives = 56/78 (71.79%), Query Frame = 0 

Query: 3   SKVKISKVSFKNIRGTSGNALAVKLVCSSSVPCESVELADIDLTYNGSEGPILSQCSNVK 62
           SKVK+S +SFKNIRGTS    A+K +CS S PC++VELADID+ +NG+E P  SQC NVK
Sbjct: 325 SKVKLSNISFKNIRGTSALPEAIKFICSGSSPCQNVELADIDIKHNGAE-PATSQCLNVK 384

Query: 63  PVVSGKQNSPACSSLASK 81
           P+ SGK N   CS    K
Sbjct: 385 PITSGKLNPIPCSGPVPK 401

[Close]
BLAST of Cla97C08G146050 vs. TAIR10
Match: AT3G14040.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 94.7 bits (234), Expect = 2.8e-20
Identity = 43/78 (55.13%), Postives = 60/78 (76.92%), Query Frame = 0 

Query: 1   IPSKVKISKVSFKNIRGTSGNALAVKLVCSSSVPCESVELADIDLTYNGSEGPILSQCSN 60
           +PSKVK+S V+ KNI+GTS   +AVKL+CS  VPC ++ L+DI+L +NG EGP +S CSN
Sbjct: 364 VPSKVKLSDVTIKNIKGTSATKVAVKLMCSKGVPCTNIALSDINLVHNGKEGPAVSACSN 423

Query: 61  VKPVVSGKQNSPACSSLA 79
           +KP++SGK    AC+ +A
Sbjct: 424 IKPILSGKLVPAACTEVA 441

[Close]
BLAST of Cla97C08G146050 vs. TAIR10
Match: AT3G07850.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 90.9 bits (224), Expect = 4.1e-19
Identity = 41/78 (52.56%), Postives = 59/78 (75.64%), Query Frame = 0 

Query: 1   IPSKVKISKVSFKNIRGTSGNALAVKLVCSSSVPCESVELADIDLTYNGSEGPILSQCSN 60
           +PS+VK+S V+ K I+GTS   +AVKL+CS  VPC ++ L+DI+L +NG EGP +S CSN
Sbjct: 363 VPSQVKLSDVTIKGIKGTSATKVAVKLMCSKGVPCTNIALSDINLVHNGKEGPAVSACSN 422

Query: 61  VKPVVSGKQNSPACSSLA 79
           +KP++SGK    AC+ +A
Sbjct: 423 IKPILSGKLVPAACTEVA 440

[Close]
BLAST of Cla97C08G146050 vs. TAIR10
Match: AT3G07820.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 90.1 bits (222), Expect = 7.0e-19
Identity = 42/77 (54.55%), Postives = 56/77 (72.73%), Query Frame = 0 

Query: 3   SKVKISKVSFKNIRGTSGNALAVKLVCSSSVPCESVELADIDLTYNGSEGPILSQCSNVK 62
           S +K+  +SFKNIRGTSGN  AVKL+CS   PC++VE+ DID+ YNG++GP    CSNV 
Sbjct: 315 STIKLVNISFKNIRGTSGNKDAVKLLCSKGYPCQNVEIGDIDIKYNGADGPATFHCSNVS 374

Query: 63  PVVSGKQNSPACSSLAS 80
           P + G Q+  ACS+ A+
Sbjct: 375 PKILGSQSPKACSAPAA 391

[Close]
BLAST of Cla97C08G146050 vs. TAIR10
Match: AT5G48140.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 87.0 bits (214), Expect = 5.9e-18
Identity = 43/83 (51.81%), Postives = 58/83 (69.88%), Query Frame = 0 

Query: 2   PSKVKISKVSFKNIRGTSGNALAVKLVCSSSVPCESVELADIDLTYNGSEGPILSQCSNV 61
           PS +K++ +SFK IRGTSGN  AVKL+CS   PC++VE+ D+++ Y G++GP   QCSNV
Sbjct: 314 PSTIKLANISFKKIRGTSGNKDAVKLLCSKGYPCQNVEVGDVNIQYTGADGPATFQCSNV 373

Query: 62  KPVVSGKQNSPACSSLASKASPP 85
            P + G Q   ACSS  +K  PP
Sbjct: 374 SPKLVGTQIPKACSSPVTK--PP 394

[Close]
BLAST of Cla97C08G146050 vs. TAIR10
Match: AT3G07840.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 85.1 bits (209), Expect = 2.3e-17
Identity = 41/75 (54.67%), Postives = 54/75 (72.00%), Query Frame = 0 

Query: 2   PSKVKISKVSFKNIRGTSGNALAVKLVCSSSVPCESVELADIDLTYNGSEGPILSQCSNV 61
           PS +K+  +SFKNIRGTSGN  AVKL+CS + PC +VE+ +I+L Y G++GP    CSNV
Sbjct: 315 PSTIKLVDISFKNIRGTSGNKDAVKLLCSKAHPCANVEIGNINLEYKGADGPPTFMCSNV 374

Query: 62  KPVVSGKQNSPACSS 77
            P + G QN  ACS+
Sbjct: 375 SPKLVGTQNPKACSA 389

The following BLAST results are available for this feature:
BLAST of Cla97C08G146050 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022150984.13.3e-3082.14exopolygalacturonase-like [Momordica charantia][more]
XP_011656283.15.7e-2778.82PREDICTED: exopolygalacturonase-like [Cucumis sativus] >XP_011656284.1 PREDICTED... [more]
XP_008459709.21.7e-2679.27PREDICTED: exopolygalacturonase-like [Cucumis melo][more]
XP_022157387.14.9e-2677.38exopolygalacturonase-like [Momordica charantia] >XP_022159278.1 exopolygalacturo... [more]
XP_022153637.14.1e-2569.88polygalacturonase-like [Momordica charantia][more]
BLAST of Cla97C08G146050 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CC08|A0A1S3CC08_CUCME1.1e-2679.27exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103498752 PE=3 SV=1[more]
tr|A0A1S3BML3|A0A1S3BML3_CUCME7.9e-2572.29LOW QUALITY PROTEIN: exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103... [more]
tr|A0A1S3BMK3|A0A1S3BMK3_CUCME7.9e-2572.29exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103491670 PE=3 SV=1[more]
tr|A0A1S3BN96|A0A1S3BN96_CUCME7.9e-2572.29exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103491498 PE=3 SV=1[more]
tr|A0A1S3B3X5|A0A1S3B3X5_CUCME3.9e-2471.08exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103485719 PE=3 SV=1[more]
BLAST of Cla97C08G146050 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P24548|PGLR_OENOR7.2e-2160.98Exopolygalacturonase (Fragment) OS=Oenothera organensis OX=3945 PE=2 SV=1[more]
sp|W8P8Q3|SALK6_KALTU2.1e-2060.98Probable galacturan 1,4-alpha-galacturonidase SALK6 OS=Kali turgidum OX=151250 P... [more]
sp|Q05967|PGLR_TOBAC1.3e-1956.10Polygalacturonase OS=Nicotiana tabacum OX=4097 GN=PG1 PE=2 SV=1[more]
sp|P49063|PGLR2_ARATH7.4e-1852.56Exopolygalacturonase clone GBGA483 OS=Arabidopsis thaliana OX=3702 GN=At3g07850 ... [more]
sp|Q39786|PGLR_GOSHI2.8e-1758.97Polygalacturonase OS=Gossypium hirsutum OX=3635 GN=G9 PE=2 SV=1[more]
BLAST of Cla97C08G146050 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G14040.12.8e-2055.13Pectin lyase-like superfamily protein[more]
AT3G07850.14.1e-1952.56Pectin lyase-like superfamily protein[more]
AT3G07820.17.0e-1954.55Pectin lyase-like superfamily protein[more]
AT5G48140.15.9e-1851.81Pectin lyase-like superfamily protein[more]
AT3G07840.12.3e-1754.67Pectin lyase-like superfamily protein[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR011050Pectin_lyase_fold/virulence
IPR012334Pectin_lyas_fold
IPR000743Glyco_hydro_28
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0071555 cell wall organization
biological_process GO:0008152 metabolic process
cellular_component GO:0005576 extracellular region
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0016798 hydrolase activity, acting on glycosyl bonds
molecular_function GO:0004650 polygalacturonase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C08G146050.1Cla97C08G146050.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000743Glycoside hydrolase, family 28PFAMPF00295Glyco_hydro_28coord: 3..63
e-value: 2.0E-11
score: 43.4
IPR012334Pectin lyase foldGENE3DG3DSA:2.160.20.10coord: 2..84
e-value: 4.3E-14
score: 54.2
NoneNo IPR availablePANTHERPTHR31375FAMILY NOT NAMEDcoord: 1..69
NoneNo IPR availablePANTHERPTHR31375:SF100SUBFAMILY NOT NAMEDcoord: 1..69
IPR011050Pectin lyase fold/virulence factorSUPERFAMILYSSF51126Pectin lyase-likecoord: 2..75

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C08G146050Bhi06G000106Wax gourdwgowmbB147
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C08G146050Silver-seed gourdcarwmbB0635
Cla97C08G146050Cucurbita maxima (Rimu)cmawmbB046
Cla97C08G146050Cucurbita maxima (Rimu)cmawmbB499
Cla97C08G146050Cucurbita moschata (Rifu)cmowmbB029
Cla97C08G146050Cucurbita moschata (Rifu)cmowmbB481
Cla97C08G146050Bottle gourd (USVL1VR-Ls)lsiwmbB445
Cla97C08G146050Watermelon (Charleston Gray)wcgwmbB336
Cla97C08G146050Watermelon (97103) v1wmwmbB101