Cla97C07G142130 (gene) Watermelon (97103) v2

NameCla97C07G142130
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionRas family
LocationCla97Chr07 : 29673476 .. 29674108 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCAAAATTGTTCTGATCGGCATCTCTGCTGTGAGGAAATCGAACCTCCTCTCGCGATTCTGTCGGAATGAGTTTGATAATAACTATAAGGCCTCAATCGACTTTGAGTTTCAGACTCAAGTGGTGGAAATCGACGGCAAAGAGGTTAAGCCTCACGTCTGGAACTTTTTGTTTCTTCATCTTTTGTCTTTTAATTTAAAATTCATCCCATGTTTTATTTGCTCAATGGCGTCTGAGAATTTCTCTTCCACTTGTGTTCCCATTGTTCCAGATTCCAAAACAGGGGTTTCTTGGATGATGGGATTAGGAGGAGGAATCCATTTTCAAGTTTCAGTTTTTATCGAATAAAATCAGTTTTTTCATTTAGGTGAAGCAGGGAATCGATGAACTAAAATGAGCAAATTCTGTTTGATTGCCTTTTTAGTGGTTGATTCCCACGCCCTCTATGTGTTTGTTGTAAGGCTTCAATCAAAGAAACAGATGTTTATTTTTTATTTAGATATATGAACTTATGCGATGAATTTTTTTTCTCTTTGGTTACAGTGTAAAGGGGAAATGAAAAAGGATGAAGATATTTCGGGTGCGAAATTTGCTCTGTATGGTTGTTCTAAGCTTGAGGATATGAAGTAA

mRNA sequence

ATGTTCAAAATTGTTCTGATCGGCATCTCTGCTGTGAGGAAATCGAACCTCCTCTCGCGATTCTGTCGGAATGAGTTTGATAATAACTATAAGGCCTCAATCGACTTTGAGTTTCAGACTCAAGTGGTGGAAATCGACGGCAAAGAGTGTAAAGGGGAAATGAAAAAGGATGAAGATATTTCGGGTGCGAAATTTGCTCTGTATGGTTGTTCTAAGCTTGAGGATATGAAGTAA

Coding sequence (CDS)

ATGTTCAAAATTGTTCTGATCGGCATCTCTGCTGTGAGGAAATCGAACCTCCTCTCGCGATTCTGTCGGAATGAGTTTGATAATAACTATAAGGCCTCAATCGACTTTGAGTTTCAGACTCAAGTGGTGGAAATCGACGGCAAAGAGTGTAAAGGGGAAATGAAAAAGGATGAAGATATTTCGGGTGCGAAATTTGCTCTGTATGGTTGTTCTAAGCTTGAGGATATGAAGTAA

Protein sequence

MFKIVLIGISAVRKSNLLSRFCRNEFDNNYKASIDFEFQTQVVEIDGKECKGEMKKDEDISGAKFALYGCSKLEDMK
BLAST of Cla97C07G142130 vs. NCBI nr
Match: XP_004149322.1 (PREDICTED: ras-related protein RABA5e [Cucumis sativus] >KGN44658.1 RAB11G [Cucumis sativus])

HSP 1 Score: 81.3 bits (199), Expect = 1.6e-12
Identity = 42/54 (77.78%), Postives = 46/54 (85.19%), Query Frame = 0

Query: 1  MFKIVLIGISAVRKSNLLSRFCRNEFDNNYKASIDFEFQTQVVEIDGKECKGEM 55
          +FKIVLIG SAV KSNLLSRF RNEFDNN KA+I  EFQTQVVEIDGKE K ++
Sbjct: 13 LFKIVLIGDSAVGKSNLLSRFARNEFDNNSKATIGVEFQTQVVEIDGKEVKAQI 66

BLAST of Cla97C07G142130 vs. NCBI nr
Match: EOX93779.1 (RAB GTPase A5B [Theobroma cacao])

HSP 1 Score: 81.3 bits (199), Expect = 1.6e-12
Identity = 42/54 (77.78%), Postives = 46/54 (85.19%), Query Frame = 0

Query: 1  MFKIVLIGISAVRKSNLLSRFCRNEFDNNYKASIDFEFQTQVVEIDGKECKGEM 55
          +FKIVLIG SAV KSNLLSRF RNEFDNN KA+I  EFQTQVVEIDGKE K ++
Sbjct: 14 LFKIVLIGDSAVGKSNLLSRFARNEFDNNSKATIGVEFQTQVVEIDGKEVKAQI 67

BLAST of Cla97C07G142130 vs. NCBI nr
Match: XP_008458081.1 (PREDICTED: ras-related protein RABA5b [Cucumis melo])

HSP 1 Score: 81.3 bits (199), Expect = 1.6e-12
Identity = 42/54 (77.78%), Postives = 46/54 (85.19%), Query Frame = 0

Query: 1  MFKIVLIGISAVRKSNLLSRFCRNEFDNNYKASIDFEFQTQVVEIDGKECKGEM 55
          +FKIVLIG SAV KSNLLSRF RNEFDNN KA+I  EFQTQVVEIDGKE K ++
Sbjct: 14 LFKIVLIGDSAVGKSNLLSRFARNEFDNNSKATIGVEFQTQVVEIDGKEVKAQI 67

BLAST of Cla97C07G142130 vs. NCBI nr
Match: XP_012466092.1 (PREDICTED: ras-related protein RABA5e-like [Gossypium raimondii] >KJB84096.1 hypothetical protein B456_N003900 [Gossypium raimondii])

HSP 1 Score: 81.3 bits (199), Expect = 1.6e-12
Identity = 42/54 (77.78%), Postives = 46/54 (85.19%), Query Frame = 0

Query: 1  MFKIVLIGISAVRKSNLLSRFCRNEFDNNYKASIDFEFQTQVVEIDGKECKGEM 55
          +FKIVLIG SAV KSNLLSRF RNEFDNN KA+I  EFQTQVVEIDGKE K ++
Sbjct: 14 LFKIVLIGDSAVGKSNLLSRFARNEFDNNSKATIGVEFQTQVVEIDGKEIKAQI 67

BLAST of Cla97C07G142130 vs. NCBI nr
Match: XP_016745819.1 (PREDICTED: ras-related protein RABA5b-like [Gossypium hirsutum])

HSP 1 Score: 81.3 bits (199), Expect = 1.6e-12
Identity = 42/54 (77.78%), Postives = 46/54 (85.19%), Query Frame = 0

Query: 1  MFKIVLIGISAVRKSNLLSRFCRNEFDNNYKASIDFEFQTQVVEIDGKECKGEM 55
          +FKIVLIG SAV KSNLLSRF RNEFDNN KA+I  EFQTQVVEIDGKE K ++
Sbjct: 14 LFKIVLIGDSAVGKSNLLSRFARNEFDNNSKATIGVEFQTQVVEIDGKEIKAQI 67

BLAST of Cla97C07G142130 vs. TrEMBL
Match: tr|A0A1S3C7M2|A0A1S3C7M2_CUCME (ras-related protein RABA5b OS=Cucumis melo OX=3656 GN=LOC103497619 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-12
Identity = 42/54 (77.78%), Postives = 46/54 (85.19%), Query Frame = 0

Query: 1  MFKIVLIGISAVRKSNLLSRFCRNEFDNNYKASIDFEFQTQVVEIDGKECKGEM 55
          +FKIVLIG SAV KSNLLSRF RNEFDNN KA+I  EFQTQVVEIDGKE K ++
Sbjct: 14 LFKIVLIGDSAVGKSNLLSRFARNEFDNNSKATIGVEFQTQVVEIDGKEVKAQI 67

BLAST of Cla97C07G142130 vs. TrEMBL
Match: tr|A0A061DLV5|A0A061DLV5_THECC (RAB GTPase A5B OS=Theobroma cacao OX=3641 GN=TCM_002700 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-12
Identity = 42/54 (77.78%), Postives = 46/54 (85.19%), Query Frame = 0

Query: 1  MFKIVLIGISAVRKSNLLSRFCRNEFDNNYKASIDFEFQTQVVEIDGKECKGEM 55
          +FKIVLIG SAV KSNLLSRF RNEFDNN KA+I  EFQTQVVEIDGKE K ++
Sbjct: 14 LFKIVLIGDSAVGKSNLLSRFARNEFDNNSKATIGVEFQTQVVEIDGKEVKAQI 67

BLAST of Cla97C07G142130 vs. TrEMBL
Match: tr|A0A1R3KTP9|A0A1R3KTP9_9ROSI (Small GTPase superfamily OS=Corchorus olitorius OX=93759 GN=COLO4_04502 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-12
Identity = 42/54 (77.78%), Postives = 46/54 (85.19%), Query Frame = 0

Query: 1  MFKIVLIGISAVRKSNLLSRFCRNEFDNNYKASIDFEFQTQVVEIDGKECKGEM 55
          +FKIVLIG SAV KSNLLSRF RNEFDNN KA+I  EFQTQVVEIDGKE K ++
Sbjct: 15 LFKIVLIGDSAVGKSNLLSRFARNEFDNNSKATIGVEFQTQVVEIDGKEIKAQI 68

BLAST of Cla97C07G142130 vs. TrEMBL
Match: tr|A0A1U8P6G2|A0A1U8P6G2_GOSHI (ras-related protein RABA5b-like OS=Gossypium hirsutum OX=3635 GN=LOC107954694 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-12
Identity = 42/54 (77.78%), Postives = 46/54 (85.19%), Query Frame = 0

Query: 1  MFKIVLIGISAVRKSNLLSRFCRNEFDNNYKASIDFEFQTQVVEIDGKECKGEM 55
          +FKIVLIG SAV KSNLLSRF RNEFDNN KA+I  EFQTQVVEIDGKE K ++
Sbjct: 14 LFKIVLIGDSAVGKSNLLSRFARNEFDNNSKATIGVEFQTQVVEIDGKEIKAQI 67

BLAST of Cla97C07G142130 vs. TrEMBL
Match: tr|A0A1U8PC28|A0A1U8PC28_GOSHI (ras-related protein RABA5b-like isoform X1 OS=Gossypium hirsutum OX=3635 GN=LOC107956833 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-12
Identity = 42/54 (77.78%), Postives = 46/54 (85.19%), Query Frame = 0

Query: 1  MFKIVLIGISAVRKSNLLSRFCRNEFDNNYKASIDFEFQTQVVEIDGKECKGEM 55
          +FKIVLIG SAV KSNLLSRF RNEFDNN KA+I  EFQTQVVEIDGKE K ++
Sbjct: 14 LFKIVLIGESAVGKSNLLSRFARNEFDNNSKATIGVEFQTQVVEIDGKEIKAQI 67

BLAST of Cla97C07G142130 vs. Swiss-Prot
Match: sp|Q9SRS5|RAA5B_ARATH (Ras-related protein RABA5b OS=Arabidopsis thaliana OX=3702 GN=RABA5B PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 8.5e-13
Identity = 38/54 (70.37%), Postives = 45/54 (83.33%), Query Frame = 0

Query: 1  MFKIVLIGISAVRKSNLLSRFCRNEFDNNYKASIDFEFQTQVVEIDGKECKGEM 55
          +FKIVLIG SAV KSNLLSRF R+EFD N KA+I  EFQTQ+VEI+GKE K ++
Sbjct: 12 LFKIVLIGDSAVGKSNLLSRFSRDEFDTNSKATIGVEFQTQLVEIEGKEVKAQI 65

BLAST of Cla97C07G142130 vs. Swiss-Prot
Match: sp|P19892|RAA5E_ARATH (Ras-related protein RABA5e OS=Arabidopsis thaliana OX=3702 GN=RABA5E PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.6e-11
Identity = 35/54 (64.81%), Postives = 43/54 (79.63%), Query Frame = 0

Query: 1  MFKIVLIGISAVRKSNLLSRFCRNEFDNNYKASIDFEFQTQVVEIDGKECKGEM 55
          +FKIV+IG SAV KSNLLSR+ RNEF  N KA+I  EFQTQ +EI+GKE K ++
Sbjct: 12 LFKIVVIGDSAVGKSNLLSRYARNEFSANSKATIGVEFQTQSMEIEGKEVKAQI 65

BLAST of Cla97C07G142130 vs. Swiss-Prot
Match: sp|Q9SIP0|RAA5D_ARATH (Ras-related protein RABA5d OS=Arabidopsis thaliana OX=3702 GN=RABA5D PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.0e-10
Identity = 34/54 (62.96%), Postives = 44/54 (81.48%), Query Frame = 0

Query: 1  MFKIVLIGISAVRKSNLLSRFCRNEFDNNYKASIDFEFQTQVVEIDGKECKGEM 55
          +FKIV+IG SAV KSNLLSR+ RNEF+ + KA+I  EFQTQ +EI+GKE K ++
Sbjct: 12 LFKIVIIGDSAVGKSNLLSRYARNEFNAHSKATIGVEFQTQNMEIEGKEVKAQI 65

BLAST of Cla97C07G142130 vs. Swiss-Prot
Match: sp|P28187|RAA5C_ARATH (Ras-related protein RABA5c OS=Arabidopsis thaliana OX=3702 GN=RABA5C PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.4e-10
Identity = 34/54 (62.96%), Postives = 43/54 (79.63%), Query Frame = 0

Query: 1  MFKIVLIGISAVRKSNLLSRFCRNEFDNNYKASIDFEFQTQVVEIDGKECKGEM 55
          +FKIV+IG SAV KSNLL+R+ RNEF+ N KA+I  EFQTQ + IDGKE K ++
Sbjct: 12 LFKIVIIGDSAVGKSNLLTRYARNEFNPNSKATIGVEFQTQSMLIDGKEVKAQI 65

BLAST of Cla97C07G142130 vs. Swiss-Prot
Match: sp|Q9FGK5|RAA5A_ARATH (Ras-related protein RABA5a OS=Arabidopsis thaliana OX=3702 GN=RABA5A PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 8.8e-10
Identity = 33/54 (61.11%), Postives = 43/54 (79.63%), Query Frame = 0

Query: 1  MFKIVLIGISAVRKSNLLSRFCRNEFDNNYKASIDFEFQTQVVEIDGKECKGEM 55
          +FKIVLIG SAV KSNLL+RF R+EF  N K++I  EFQTQ ++I+GKE K ++
Sbjct: 14 LFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEIKAQI 67

BLAST of Cla97C07G142130 vs. TAIR10
Match: AT3G07410.1 (RAB GTPase homolog A5B)

HSP 1 Score: 73.9 bits (180), Expect = 4.7e-14
Identity = 38/54 (70.37%), Postives = 45/54 (83.33%), Query Frame = 0

Query: 1  MFKIVLIGISAVRKSNLLSRFCRNEFDNNYKASIDFEFQTQVVEIDGKECKGEM 55
          +FKIVLIG SAV KSNLLSRF R+EFD N KA+I  EFQTQ+VEI+GKE K ++
Sbjct: 12 LFKIVLIGDSAVGKSNLLSRFSRDEFDTNSKATIGVEFQTQLVEIEGKEVKAQI 65

BLAST of Cla97C07G142130 vs. TAIR10
Match: AT1G05810.1 (RAB GTPase homolog A5E)

HSP 1 Score: 68.6 bits (166), Expect = 2.0e-12
Identity = 35/54 (64.81%), Postives = 43/54 (79.63%), Query Frame = 0

Query: 1   MFKIVLIGISAVRKSNLLSRFCRNEFDNNYKASIDFEFQTQVVEIDGKECKGEM 55
           +FKIV+IG SAV KSNLLSR+ RNEF  N KA+I  EFQTQ +EI+GKE K ++
Sbjct: 55  LFKIVVIGDSAVGKSNLLSRYARNEFSANSKATIGVEFQTQSMEIEGKEVKAQI 108

BLAST of Cla97C07G142130 vs. TAIR10
Match: AT2G31680.1 (RAB GTPase homolog A5D)

HSP 1 Score: 67.0 bits (162), Expect = 5.8e-12
Identity = 34/54 (62.96%), Postives = 44/54 (81.48%), Query Frame = 0

Query: 1  MFKIVLIGISAVRKSNLLSRFCRNEFDNNYKASIDFEFQTQVVEIDGKECKGEM 55
          +FKIV+IG SAV KSNLLSR+ RNEF+ + KA+I  EFQTQ +EI+GKE K ++
Sbjct: 12 LFKIVIIGDSAVGKSNLLSRYARNEFNAHSKATIGVEFQTQNMEIEGKEVKAQI 65

BLAST of Cla97C07G142130 vs. TAIR10
Match: AT2G43130.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 66.6 bits (161), Expect = 7.5e-12
Identity = 34/54 (62.96%), Postives = 43/54 (79.63%), Query Frame = 0

Query: 1  MFKIVLIGISAVRKSNLLSRFCRNEFDNNYKASIDFEFQTQVVEIDGKECKGEM 55
          +FKIV+IG SAV KSNLL+R+ RNEF+ N KA+I  EFQTQ + IDGKE K ++
Sbjct: 12 LFKIVIIGDSAVGKSNLLTRYARNEFNPNSKATIGVEFQTQSMLIDGKEVKAQI 65

BLAST of Cla97C07G142130 vs. TAIR10
Match: AT5G47520.1 (RAB GTPase homolog A5A)

HSP 1 Score: 63.9 bits (154), Expect = 4.9e-11
Identity = 33/54 (61.11%), Postives = 43/54 (79.63%), Query Frame = 0

Query: 1  MFKIVLIGISAVRKSNLLSRFCRNEFDNNYKASIDFEFQTQVVEIDGKECKGEM 55
          +FKIVLIG SAV KSNLL+RF R+EF  N K++I  EFQTQ ++I+GKE K ++
Sbjct: 14 LFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEIKAQI 67

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004149322.11.6e-1277.78PREDICTED: ras-related protein RABA5e [Cucumis sativus] >KGN44658.1 RAB11G [Cucu... [more]
EOX93779.11.6e-1277.78RAB GTPase A5B [Theobroma cacao][more]
XP_008458081.11.6e-1277.78PREDICTED: ras-related protein RABA5b [Cucumis melo][more]
XP_012466092.11.6e-1277.78PREDICTED: ras-related protein RABA5e-like [Gossypium raimondii] >KJB84096.1 hyp... [more]
XP_016745819.11.6e-1277.78PREDICTED: ras-related protein RABA5b-like [Gossypium hirsutum][more]
Match NameE-valueIdentityDescription
tr|A0A1S3C7M2|A0A1S3C7M2_CUCME1.1e-1277.78ras-related protein RABA5b OS=Cucumis melo OX=3656 GN=LOC103497619 PE=4 SV=1[more]
tr|A0A061DLV5|A0A061DLV5_THECC1.1e-1277.78RAB GTPase A5B OS=Theobroma cacao OX=3641 GN=TCM_002700 PE=4 SV=1[more]
tr|A0A1R3KTP9|A0A1R3KTP9_9ROSI1.1e-1277.78Small GTPase superfamily OS=Corchorus olitorius OX=93759 GN=COLO4_04502 PE=4 SV=... [more]
tr|A0A1U8P6G2|A0A1U8P6G2_GOSHI1.1e-1277.78ras-related protein RABA5b-like OS=Gossypium hirsutum OX=3635 GN=LOC107954694 PE... [more]
tr|A0A1U8PC28|A0A1U8PC28_GOSHI1.1e-1277.78ras-related protein RABA5b-like isoform X1 OS=Gossypium hirsutum OX=3635 GN=LOC1... [more]
Match NameE-valueIdentityDescription
sp|Q9SRS5|RAA5B_ARATH8.5e-1370.37Ras-related protein RABA5b OS=Arabidopsis thaliana OX=3702 GN=RABA5B PE=1 SV=1[more]
sp|P19892|RAA5E_ARATH3.6e-1164.81Ras-related protein RABA5e OS=Arabidopsis thaliana OX=3702 GN=RABA5E PE=2 SV=1[more]
sp|Q9SIP0|RAA5D_ARATH1.0e-1062.96Ras-related protein RABA5d OS=Arabidopsis thaliana OX=3702 GN=RABA5D PE=1 SV=1[more]
sp|P28187|RAA5C_ARATH1.4e-1062.96Ras-related protein RABA5c OS=Arabidopsis thaliana OX=3702 GN=RABA5C PE=1 SV=1[more]
sp|Q9FGK5|RAA5A_ARATH8.8e-1061.11Ras-related protein RABA5a OS=Arabidopsis thaliana OX=3702 GN=RABA5A PE=1 SV=1[more]
Match NameE-valueIdentityDescription
AT3G07410.14.7e-1470.37RAB GTPase homolog A5B[more]
AT1G05810.12.0e-1264.81RAB GTPase homolog A5E[more]
AT2G31680.15.8e-1262.96RAB GTPase homolog A5D[more]
AT2G43130.17.5e-1262.96P-loop containing nucleoside triphosphate hydrolases superfamily protein[more]
AT5G47520.14.9e-1161.11RAB GTPase homolog A5A[more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR001806Small_GTPase
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0046907 intracellular transport
biological_process GO:0048507 meristem development
biological_process GO:0007389 pattern specification process
biological_process GO:0015031 protein transport
biological_process GO:0007264 small GTPase mediated signal transduction
biological_process GO:0008150 biological_process
cellular_component GO:0005622 intracellular
cellular_component GO:0016020 membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0016787 hydrolase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C07G142130.1Cla97C07G142130.1mRNA


Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 2..23
score: 44.29
coord: 25..41
score: 24.77
NoneNo IPR availableGENE3DG3DSA:3.40.50.300coord: 1..68
e-value: 4.6E-11
score: 44.2
NoneNo IPR availablePANTHERPTHR24073:SF884RAS-RELATED PROTEIN RABA5Bcoord: 1..54
NoneNo IPR availablePANTHERPTHR24073FAMILY NOT NAMEDcoord: 1..54
NoneNo IPR availablePROSITEPS51419RABcoord: 1..77
score: 10.374
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 3..51
e-value: 2.5E-10
score: 40.1
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILYSSF52540P-loop containing nucleoside triphosphate hydrolasescoord: 2..51

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C07G142130Csa4G011610Cucumber (Chinese Long) v2cuwmbB317
Cla97C07G142130CsGy4G002650Cucumber (Gy14) v2cgybwmbB299
Cla97C07G142130CsaV3_4G002730Cucumber (Chinese Long) v3cucwmbB325
The following gene(s) are paralogous to this gene:

None