Cla97C07G134560 (gene) Watermelon (97103) v2

NameCla97C07G134560
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionDNA gyrase subunit A family protein
LocationCla97Chr07 : 13359734 .. 13362148 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAAGTTCTTGGTGTGTTCTTCCAACCGCTGCTGATCTTCTGATGCCGACTGAAAGCTTTGACGTTTTCTCAGTGAACTCTACATCCAAGTTTTTTCTTGGACTGCCGGTGATCTAGTCACATAAGAATTTCTTGCAAAGTTTAGTGAGTTTCCAACATTCTCAAGAAAGACCCACTTCGGACTTAAGAAGGATCCTTCTATTTCTTCATCTTTCATAACTTGATTTAAACGAACTAAATCAATTGGGTTGGAAAAGCCTTTAACGAACAGGATGCCCTTAACAAACTTCAGAGGATCCAAAATTTCTATATCACCATAATTAAAAAAGATGTTACCTCGGTTCTCATCAGTAATTTTATAATAGCAGGCATGAAACCACATAAATTCTTTTTAACTTGAACTTTGGCTTCTGCTACATTGAAAAGATTAGATGTTTCGTTTGAGATTGATTCCAGCCCTCCATAGTACGCCTTACGGCTTCAAACGTCTTCCTACACCAGTAATCCAATGGAAGGTCCTTAATTGAGATCCAACCTCCATAACCTTTCATCAAACTTGGACGATTGTGTGTGAATTTGTCCCATCTTTCAAACTTCAAATGGAAATTACCATATTCATGCCATTTATTTGGCTGGATAATTAAATCTTCAAAGTTCTCTTGATCTACTTTTATTAAGGCATTCTCTGCGAATAATCACATCATATTTGAAATAAGACTTTAACATGCTTGCAATCTCAGTCCAATCATTGAACTCAAAAAGCCTTAATACTATCCAAAAGATTGCCACCCCTGAGTTGAGTCTCCTGTTGGGACGTGGATGAAACACCTATACCCCTAAAGAGGGCCATACTACACATCTCATTAACCAACCATATGATGTGTATAGTTTAGACAACTTTGTTGTGCCATACCCATCTCTACTCTTTCTTTCATAAAAACTCGATAATGAGCTCTTGGAAAAATCCAATATATTTTCCATAAACTAAATAACTTGCGTCTTTGAGAGGACTATCTTTTTTCTGGCTTCCACATGTTCAATAAAAATTTACTAGATTCAAACCATATACAAAAATGAGCTTCATTCACTAAACAACTTTTTACTTCCATGGCTTTCTCTGTTAGACCTTCGAGCTTAGTAAGAAGCTCGATGAGACGACAAACGATGATGTTGACTGGAAGAGCAAGACTCGGCGGATGATGTTATTGGATGGAGGGACGACAAAAAGGAAGACGAGAGAGGAGAAAGGAGAGAGCATGCTTACCTTAGTTTGACATTGCAAGGCAGTGGATTATTAGATTGAATTTCACTATTCAAGAAGAAATTTGTATTAATGAAATGGAAGCAATTAAGAAGTGGAAAGAAATACAAATTGGAAAGGAGGTCTCTATCTTTGATCACTTGCCCCATTGCTAGCGCTCCGTGGTCTCTTTTCTACAATGTTTTGGTTGGCAATGACCCCTCCCCACAACATTTACAGTACTCTCTCTTCTTTGAAGATCTTGAGGTTGCACGTTCAAATCTTCAGGAAAACCCTTGATGACCAATGAATTTGACTTGACAAGTTGAGATGCATCCCCTAGGTTGAGACAAAGCAACCTTAATAAGGCATGTATCTAGTTTTTCATGATTTGAGATTCGAGTAGAACGAATGTAGGCTTGGAGACACCTTAACAGAACAAGATGGCAAACCAAAGTTGGGGTCATTTGACCAAGTCCATGATGATTGTCGAACTTAAATTTTTTTTAATTAAGTTCTTGCTTTGTTTTTTCCCCTCTCTATACAAGTCATTCTAGTTCTTTGGGCTTTTACTGCTAAATGGTTGCTGATCACTTTTTTACTTTCCTTCATATTTTTGAAGGAACCAAAAATTTCATTGATCAAAGGAGACCTATCCTTCATTATTATAATTTTTGTCACTTCTATTCATAGTTTTAGTTCTAATTCTCATAGTCTCATGCTTTTTATAGGATTTCTCTTTAAGGTGCCCACTCATCCAAGGCCATGGAAATTTTGGTTCCATTGATGCAGATCCTCCTGCTGCCATGCGGTATACTGAGTGCAGATTGGAAGTACGTTTAAATATGTTTGCTTTTTTAGAGAATTCAGTTGTTTGAAGATATGAAAAACCGTTTTGTCAGGCCTCAGTTACCTACTTTTCCTAAACAAATAAAACTCAACCCTCTGTTCGTCACTGGGAAGGTATAAAGAAAATCATCATAGAAAGTAGAGTAGTTGTCTTACGATTAAAAGCCATTTTTTTTTTTTTCTTGAGTTTTTTCCCACATTTTGTTCAAACTTCTGTAATTTCTGAAAACCGTCAATCTTTTTGTCATAATTGTTGTATAGGATCAAAAATGTCTGATCGGGCATAAAGCATATGTGTTTGCTTGCTGGCATGTTGGATTAAATTT

mRNA sequence

GAAAGTTCTTGGTGTGTTCTTCCAACCGCTGCTGATCTTCTGATGCCGACTGAAAGCTTTGACGTTTTCTCAGTGAACTCTACATCCAAGTGCCCACTCATCCAAGGCCATGGAAATTTTGGTTCCATTGATGCAGATCCTCCTGCTGCCATGCGGTATACTGAGTGCAGATTGGAAAGAATTCAGTTGTTTGAAGATATGAAAAACCGTTTTGTCAGGCCTCAGTTACCTACTTTTCCTAAACAAATAAAACTCAACCCTCTGTTCGTCACTGGGAAGGATCAAAAATGTCTGATCGGGCATAAAGCATATGTGTTTGCTTGCTGGCATGTTGGATTAAATTT

Coding sequence (CDS)

GAAAGTTCTTGGTGTGTTCTTCCAACCGCTGCTGATCTTCTGATGCCGACTGAAAGCTTTGACGTTTTCTCAGTGAACTCTACATCCAAGTGCCCACTCATCCAAGGCCATGGAAATTTTGGTTCCATTGATGCAGATCCTCCTGCTGCCATGCGGTATACTGAGTGCAGATTGGAAAGAATTCAGTTGTTTGAAGATATGAAAAACCGTTTTGTCAGGCCTCAGTTACCTACTTTTCCTAAACAAATAAAACTCAACCCTCTGTTCGTCACTGGGAAGGATCAAAAATGTCTGATCGGGCATAAAGCATATGTGTTTGCTTGCTGGCATGTTGGATTAAATTT

Protein sequence

ESSWCVLPTAADLLMPTESFDVFSVNSTSKCPLIQGHGNFGSIDADPPAAMRYTECRLERIQLFEDMKNRFVRPQLPTFPKQIKLNPLFVTGKDQKCLIGHKAYVFACWHVGLN
BLAST of Cla97C07G134560 vs. NCBI nr
Match: CBI29134.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 73.9 bits (180), Expect = 3.8e-10
Identity = 31/35 (88.57%), Postives = 34/35 (97.14%), Query Frame = 0

Query: 30  KCPLIQGHGNFGSIDADPPAAMRYTECRLERIQLF 65
           +CPLIQGHGNFGS+DADPPAAMRYTECRLE I+LF
Sbjct: 78  RCPLIQGHGNFGSVDADPPAAMRYTECRLEVIRLF 112

BLAST of Cla97C07G134560 vs. NCBI nr
Match: XP_020587485.1 (DNA gyrase subunit A, chloroplastic/mitochondrial isoform X4 [Phalaenopsis equestris])

HSP 1 Score: 73.9 bits (180), Expect = 3.8e-10
Identity = 33/49 (67.35%), Postives = 40/49 (81.63%), Query Frame = 0

Query: 13 LLMPTESFDVFSVNSTSKCPLIQGHGNFGSIDADPPAAMRYTECRLERI 62
          +L+P  SF   + N + +CPLIQGHGNFGS+DADPPAAMRYTECRLE +
Sbjct: 28 ILVPIVSFQ--AKNFSMRCPLIQGHGNFGSVDADPPAAMRYTECRLEAV 74

BLAST of Cla97C07G134560 vs. NCBI nr
Match: XP_020587484.1 (DNA gyrase subunit A, chloroplastic/mitochondrial isoform X3 [Phalaenopsis equestris])

HSP 1 Score: 72.4 bits (176), Expect = 1.1e-09
Identity = 31/44 (70.45%), Postives = 36/44 (81.82%), Query Frame = 0

Query: 18  ESFDVFSVNSTSKCPLIQGHGNFGSIDADPPAAMRYTECRLERI 62
           ES    + N + +CPLIQGHGNFGS+DADPPAAMRYTECRLE +
Sbjct: 166 ESLVRMAQNFSMRCPLIQGHGNFGSVDADPPAAMRYTECRLEAV 209

BLAST of Cla97C07G134560 vs. NCBI nr
Match: XP_020587482.1 (DNA gyrase subunit A, chloroplastic/mitochondrial isoform X1 [Phalaenopsis equestris])

HSP 1 Score: 72.4 bits (176), Expect = 1.1e-09
Identity = 31/44 (70.45%), Postives = 36/44 (81.82%), Query Frame = 0

Query: 18  ESFDVFSVNSTSKCPLIQGHGNFGSIDADPPAAMRYTECRLERI 62
           ES    + N + +CPLIQGHGNFGS+DADPPAAMRYTECRLE +
Sbjct: 166 ESLVRMAQNFSMRCPLIQGHGNFGSVDADPPAAMRYTECRLEAV 209

BLAST of Cla97C07G134560 vs. NCBI nr
Match: XP_020587483.1 (DNA gyrase subunit A, chloroplastic/mitochondrial isoform X2 [Phalaenopsis equestris])

HSP 1 Score: 72.4 bits (176), Expect = 1.1e-09
Identity = 31/44 (70.45%), Postives = 36/44 (81.82%), Query Frame = 0

Query: 18  ESFDVFSVNSTSKCPLIQGHGNFGSIDADPPAAMRYTECRLERI 62
           ES    + N + +CPLIQGHGNFGS+DADPPAAMRYTECRLE +
Sbjct: 166 ESLVRMAQNFSMRCPLIQGHGNFGSVDADPPAAMRYTECRLEAV 209

BLAST of Cla97C07G134560 vs. TrEMBL
Match: tr|A0A059A928|A0A059A928_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_J00313 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.7e-09
Identity = 29/32 (90.62%), Postives = 31/32 (96.88%), Query Frame = 0

Query: 30  KCPLIQGHGNFGSIDADPPAAMRYTECRLERI 62
           +CPLIQGHGNFGSIDADPPAAMRYTECRLE +
Sbjct: 199 RCPLIQGHGNFGSIDADPPAAMRYTECRLEAL 230

BLAST of Cla97C07G134560 vs. TrEMBL
Match: tr|W1NNI3|W1NNI3_AMBTC (Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00119p00135690 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.7e-09
Identity = 29/32 (90.62%), Postives = 31/32 (96.88%), Query Frame = 0

Query: 30  KCPLIQGHGNFGSIDADPPAAMRYTECRLERI 62
           +CPLIQGHGNFGSIDADPPAAMRYTECRLE +
Sbjct: 216 RCPLIQGHGNFGSIDADPPAAMRYTECRLEAL 247

BLAST of Cla97C07G134560 vs. TrEMBL
Match: tr|F6HIV0|F6HIV0_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_13s0047g00510 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.8e-09
Identity = 28/32 (87.50%), Postives = 31/32 (96.88%), Query Frame = 0

Query: 30  KCPLIQGHGNFGSIDADPPAAMRYTECRLERI 62
           +CPLIQGHGNFGS+DADPPAAMRYTECRLE +
Sbjct: 78  RCPLIQGHGNFGSVDADPPAAMRYTECRLEAL 109

BLAST of Cla97C07G134560 vs. TrEMBL
Match: tr|A0A2I0A6M5|A0A2I0A6M5_9ASPA (DNA gyrase subunit A, chloroplastic/mitochondrial OS=Apostasia shenzhenica OX=1088818 GN=GYRA PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.8e-09
Identity = 28/32 (87.50%), Postives = 31/32 (96.88%), Query Frame = 0

Query: 30  KCPLIQGHGNFGSIDADPPAAMRYTECRLERI 62
           +CPLIQGHGNFGS+DADPPAAMRYTECRLE +
Sbjct: 265 RCPLIQGHGNFGSVDADPPAAMRYTECRLEAL 296

BLAST of Cla97C07G134560 vs. TrEMBL
Match: tr|A0A218XSN9|A0A218XSN9_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr022789 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.8e-09
Identity = 28/32 (87.50%), Postives = 31/32 (96.88%), Query Frame = 0

Query: 30  KCPLIQGHGNFGSIDADPPAAMRYTECRLERI 62
           +CPLIQGHGNFGS+DADPPAAMRYTECRLE +
Sbjct: 168 RCPLIQGHGNFGSVDADPPAAMRYTECRLEAL 199

BLAST of Cla97C07G134560 vs. Swiss-Prot
Match: sp|Q9CAF6|GYRA_ARATH (DNA gyrase subunit A, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=GYRA PE=1 SV=2)

HSP 1 Score: 68.2 bits (165), Expect = 6.9e-11
Identity = 28/30 (93.33%), Postives = 30/30 (100.00%), Query Frame = 0

Query: 30  KCPLIQGHGNFGSIDADPPAAMRYTECRLE 60
           +CPLIQGHGNFGSIDADPPAAMRYTECRL+
Sbjct: 192 RCPLIQGHGNFGSIDADPPAAMRYTECRLD 221

BLAST of Cla97C07G134560 vs. Swiss-Prot
Match: sp|Q5YLB5|GYRA_NICBE (DNA gyrase subunit A, chloroplastic/mitochondrial OS=Nicotiana benthamiana OX=4100 GN=GYRA PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 7.6e-10
Identity = 27/32 (84.38%), Postives = 30/32 (93.75%), Query Frame = 0

Query: 30  KCPLIQGHGNFGSIDADPPAAMRYTECRLERI 62
           + PLI+GHGNFGSIDADPPAAMRYTECRLE +
Sbjct: 181 RSPLIRGHGNFGSIDADPPAAMRYTECRLEAL 212

BLAST of Cla97C07G134560 vs. Swiss-Prot
Match: sp|Q7XZF7|GYRA_ORYSJ (Probable DNA gyrase subunit A, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=GYRA PE=2 SV=2)

HSP 1 Score: 63.5 bits (153), Expect = 1.7e-09
Identity = 26/28 (92.86%), Postives = 28/28 (100.00%), Query Frame = 0

Query: 32  PLIQGHGNFGSIDADPPAAMRYTECRLE 60
           PL+QGHGNFGSIDADPPAAMRYTECRL+
Sbjct: 175 PLVQGHGNFGSIDADPPAAMRYTECRLD 202

BLAST of Cla97C07G134560 vs. Swiss-Prot
Match: sp|O33926|GYRA_THEMA (DNA gyrase subunit A OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) OX=243274 GN=gyrA PE=3 SV=2)

HSP 1 Score: 60.1 bits (144), Expect = 1.9e-08
Identity = 28/47 (59.57%), Postives = 35/47 (74.47%), Query Frame = 0

Query: 28  TSKCPLIQGHGNFGSIDADPPAAMRYTECRLERI--QLFEDMKNRFV 73
           T + PLI+G GNFGSID DPPAAMRYTE RL R+  ++ ED++   V
Sbjct: 94  TMRYPLIEGQGNFGSIDRDPPAAMRYTEARLTRLAEEMLEDIEKNTV 140

BLAST of Cla97C07G134560 vs. Swiss-Prot
Match: sp|C5CHA8|GYRA_KOSOT (DNA gyrase subunit A OS=Kosmotoga olearia (strain TBF 19.5.1) OX=521045 GN=gyrA PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.2e-08
Identity = 29/50 (58.00%), Postives = 36/50 (72.00%), Query Frame = 0

Query: 32  PLIQGHGNFGSIDADPPAAMRYTECRLERI--QLFEDMKNRFVRPQLPTF 80
           PLIQG GNFGSID DPPAAMRYTE R++R+  +L  D+    V+  +P F
Sbjct: 98  PLIQGQGNFGSIDRDPPAAMRYTEARMQRLAEELLADIDKNTVK-MIPNF 146

BLAST of Cla97C07G134560 vs. TAIR10
Match: AT3G10690.1 (DNA GYRASE A)

HSP 1 Score: 68.2 bits (165), Expect = 3.8e-12
Identity = 28/30 (93.33%), Postives = 30/30 (100.00%), Query Frame = 0

Query: 30  KCPLIQGHGNFGSIDADPPAAMRYTECRLE 60
           +CPLIQGHGNFGSIDADPPAAMRYTECRL+
Sbjct: 192 RCPLIQGHGNFGSIDADPPAAMRYTECRLD 221

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
CBI29134.33.8e-1088.57unnamed protein product, partial [Vitis vinifera][more]
XP_020587485.13.8e-1067.35DNA gyrase subunit A, chloroplastic/mitochondrial isoform X4 [Phalaenopsis eques... [more]
XP_020587484.11.1e-0970.45DNA gyrase subunit A, chloroplastic/mitochondrial isoform X3 [Phalaenopsis eques... [more]
XP_020587482.11.1e-0970.45DNA gyrase subunit A, chloroplastic/mitochondrial isoform X1 [Phalaenopsis eques... [more]
XP_020587483.11.1e-0970.45DNA gyrase subunit A, chloroplastic/mitochondrial isoform X2 [Phalaenopsis eques... [more]
Match NameE-valueIdentityDescription
tr|A0A059A928|A0A059A928_EUCGR3.7e-0990.63Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_J00313 PE=3 SV... [more]
tr|W1NNI3|W1NNI3_AMBTC3.7e-0990.63Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00119p00135690... [more]
tr|F6HIV0|F6HIV0_VITVI4.8e-0987.50Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_13s0047g00510 PE=4 SV=... [more]
tr|A0A2I0A6M5|A0A2I0A6M5_9ASPA4.8e-0987.50DNA gyrase subunit A, chloroplastic/mitochondrial OS=Apostasia shenzhenica OX=10... [more]
tr|A0A218XSN9|A0A218XSN9_PUNGR4.8e-0987.50Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr022789 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
sp|Q9CAF6|GYRA_ARATH6.9e-1193.33DNA gyrase subunit A, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=370... [more]
sp|Q5YLB5|GYRA_NICBE7.6e-1084.38DNA gyrase subunit A, chloroplastic/mitochondrial OS=Nicotiana benthamiana OX=41... [more]
sp|Q7XZF7|GYRA_ORYSJ1.7e-0992.86Probable DNA gyrase subunit A, chloroplastic/mitochondrial OS=Oryza sativa subsp... [more]
sp|O33926|GYRA_THEMA1.9e-0859.57DNA gyrase subunit A OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109... [more]
sp|C5CHA8|GYRA_KOSOT3.2e-0858.00DNA gyrase subunit A OS=Kosmotoga olearia (strain TBF 19.5.1) OX=521045 GN=gyrA ... [more]
Match NameE-valueIdentityDescription
AT3G10690.13.8e-1293.33DNA GYRASE A[more]
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006259DNA metabolic process
GO:0006265DNA topological change
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0003677DNA binding
GO:0003918DNA topoisomerase type II (ATP-hydrolyzing) activity
Vocabulary: INTERPRO
TermDefinition
IPR013760Topo_IIA-like_dom_sf
IPR013758Topo_IIA_A/C_ab
IPR002205Topo_IIA_A/C
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006259 DNA metabolic process
biological_process GO:0006265 DNA topological change
cellular_component GO:0009507 chloroplast
cellular_component GO:0005694 chromosome
cellular_component GO:0016592 mediator complex
cellular_component GO:0005739 mitochondrion
cellular_component GO:0009295 nucleoid
molecular_function GO:0005524 ATP binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0003916 DNA topoisomerase activity
molecular_function GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C07G134560.1Cla97C07G134560.1mRNA


Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002205DNA topoisomerase, type IIA, subunit A/C-terminalPFAMPF00521DNA_topoisoIVcoord: 29..70
e-value: 3.6E-10
score: 39.2
IPR013758DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-betaGENE3DG3DSA:3.90.199.10coord: 22..80
e-value: 6.2E-13
score: 50.7
NoneNo IPR availablePANTHERPTHR43493:SF3DNA GYRASE SUBUNIT A, CHLOROPLASTIC/MITOCHONDRIALcoord: 29..67
NoneNo IPR availablePANTHERPTHR43493FAMILY NOT NAMEDcoord: 29..67
IPR013760DNA topoisomerase, type IIA-like domain superfamilySUPERFAMILYSSF56719Type II DNA topoisomerasecoord: 29..69

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None