Cla97C07G134040 (gene) Watermelon (97103) v2

Overview
NameCla97C07G134040
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionAP complex subunit sigma
LocationCla97Chr07 : 9073540 .. 9075554 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATACGAGCGGTGATAGTGATGAATACTCAGGGCAAGCCTCGGTTTGCTAAATTCTACGATTTTCAGGTTCCTTTATGGGGATTTTTGTGGATGTTTTTTTTTTGGTACTTTTTGTGTTATTTCTATCAAATGATCTGTCTGATGATGAATTCTCAAATTCAGCCTGTAGAGAAGCAGCAGGAGCTCATTCGGAGTGTCTATGGAGGTTGGCAATTCTATATTTTGATTAGATTTTTGCAAATTACTACAAGGATCAGTGTATATCCAATATCGCAACTATGGTTTCTTTAACCTGTATTTCCATTTTGATCTCTTTGGTTTCCTGTTTTGGTATAGTGCTTTGCAGTCGAGCTGAGAACGTCAGCAATTTTGTGGAGGCCGAGTCCATCTTTGGTCCTGTAAGATTTCCTTGTCCAACAATTTCCTTTAGTACCGTGTTTAGGATGTACTTGAATTGATGATTCTTTGAGAAGCTAGAAATTTGTCAAAAATGAATGTTGGTTGGCATTGTTCAACCAGTTGTAGTGCAATTATAGAGCGACCTAGCGTAGCTGATTAGTGGGACTGGCTAATGCTAATGAGTAATGAACCGTGGGGATTAACCTTTTAGTGGGACTGGCTAATGCTAATGAGTAATGAACCGTGGGGATTGACCTTTTCTGTCTGCTGCAGGACTCTCGTCTTGTATACAAGCACTTTGCCACCCTTTATTTCGTGCTTGTCTTTAACAGTTCTGAGAATGAGCTTGCCATGCTTGACCTGATACAAGGTACTTTCAAGATTATATGTGATGGATTAGTGACCACTAGAGTAGTTTTATGCACGACCTTACTTGGACAGAGCTTTTCTATAAGTTGTACCACTGTTTCTTTGAGTTCTAAAGAGTATTTTTTATGCAAATATTATTTACATGCTTACAAGGCATCTATCAGGACTTTAGTACTCCTTGGTACCTCAAGTTTTAAACTGGATGGTATCTTGTTATGTTTCGGCATTCTTTAGTACATAATTAGCGGAAGTGCGAGGAATGATGAAACGTGTGGGCTTAAAATTCTCTTACTGAAAAGACCTGAATAAATTACACAACTCAAAATAGAATTGAACCAAGTAGAAGTTGAATCATCAAAATTTCCTATTTGAATGCATTTCAATGTTATCTTCAGAAGTTTGTTGTTATGAACTTTTAGGTATGTACTGCAATTATATGATTAGTTTTGTTGTCTTATATTATTCCCTTAATTGATGGCATGATTAGGCCCTACTTTATCAGTTTTTGTAGAAACATTGGACAAGTGCTTCAAAAATGTATGTGAGCTTGACTTAGTGTTCAACTACAGCAAGGTCAGCTCTCTCTCTTGAACAACACATAAATGTACACGTGCGCACGCATGATACCAGAGTTTGAAACAAGTGATCTCTTTTGTTTCTATCTCAAGATAGTTTCTTAAAATCAAACAAACTTTTTTTTTAAGGAAAAAAAAAAAAACAATACTTTTTATTGATAAAATGAAAAGAAACTCTGCTTTAGCAGTCCCATTGGACACCTTATCATGGATCATAATGATATTCTAAGATCACCCTTTTAAGGCAACAAAATGGATATGCTGGCATAATTTGAGCTATTCTTTGGAAAATTTGGGATGAGAGGAACTCAAGGATTTTTAAAGGAAAGGAAAGATGGCTAGAAGAAGTTCTGGATTCCTCATTATTTACTTTTTTTCTAGTATTAAAATATTCAACCCTTCAATACTTTCAGATGCATACGATTTTGGATGAAATCATTTCTGGTGGGCAAGTGCTGGAGACTAGTTCCTCTGAAGTGATGAAGGCTGTTGAAGAAATATCCAAGTGCTCTCTCTCTCCCTCTATCTCTTATCCAAAAACTGTTGATTACTCTGTGTGCTTTAAGGATTTAATACAAATTCATGTCGTTGCATTCACATTGCAGGTTAGAAACAGCCTCAAATTCTATCAACTTTGTCTCAAAAACAGTTTCTGGTTGGCGGGGTTGA

mRNA sequence

ATGATACGAGCGGTGATAGTGATGAATACTCAGGGCAAGCCTCGGTTTGCTAAATTCTACGATTTTCAGCCTGTAGAGAAGCAGCAGGAGCTCATTCGGAGTGTCTATGGAGTGCTTTGCAGTCGAGCTGAGAACGTCAGCAATTTTGTGGAGGCCGAGTCCATCTTTGGTCCTGACTCTCGTCTTGTATACAAGCACTTTGCCACCCTTTATTTCGTGCTTGTCTTTAACAGTTCTGAGAATGAGCTTGCCATGCTTGACCTGATACAAGTTTTTGTAGAAACATTGGACAAGTGCTTCAAAAATGTATGTGAGCTTGACTTAGTGTTCAACTACAGCAAGATGCATACGATTTTGGATGAAATCATTTCTGGTGGGCAAGTGCTGGAGACTAGTTCCTCTGAAGTGATGAAGGCTGTTGAAGAAATATCCAAGTTAGAAACAGCCTCAAATTCTATCAACTTTGTCTCAAAAACAGTTTCTGGTTGGCGGGGTTGA

Coding sequence (CDS)

ATGATACGAGCGGTGATAGTGATGAATACTCAGGGCAAGCCTCGGTTTGCTAAATTCTACGATTTTCAGCCTGTAGAGAAGCAGCAGGAGCTCATTCGGAGTGTCTATGGAGTGCTTTGCAGTCGAGCTGAGAACGTCAGCAATTTTGTGGAGGCCGAGTCCATCTTTGGTCCTGACTCTCGTCTTGTATACAAGCACTTTGCCACCCTTTATTTCGTGCTTGTCTTTAACAGTTCTGAGAATGAGCTTGCCATGCTTGACCTGATACAAGTTTTTGTAGAAACATTGGACAAGTGCTTCAAAAATGTATGTGAGCTTGACTTAGTGTTCAACTACAGCAAGATGCATACGATTTTGGATGAAATCATTTCTGGTGGGCAAGTGCTGGAGACTAGTTCCTCTGAAGTGATGAAGGCTGTTGAAGAAATATCCAAGTTAGAAACAGCCTCAAATTCTATCAACTTTGTCTCAAAAACAGTTTCTGGTTGGCGGGGTTGA

Protein sequence

MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGPDSRLVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMHTILDEIISGGQVLETSSSEVMKAVEEISKLETASNSINFVSKTVSGWRG
Homology
[Close]
BLAST of Cla97C07G134040 vs. NCBI nr
Match: XP_008452384.1 (PREDICTED: AP-3 complex subunit sigma [Cucumis melo] >XP_008452386.1 PREDICTED: AP-3 complex subunit sigma [Cucumis melo] >XP_008452387.1 PREDICTED: AP-3 complex subunit sigma [Cucumis melo] >XP_008452388.1 PREDICTED: AP-3 complex subunit sigma [Cucumis melo] >XP_008452389.1 PREDICTED: AP-3 complex subunit sigma [Cucumis melo] >XP_008452390.1 PREDICTED: AP-3 complex subunit sigma [Cucumis melo] >XP_008452391.1 PREDICTED: AP-3 complex subunit sigma [Cucumis melo] >XP_016901330.1 PREDICTED: AP-3 complex subunit sigma [Cucumis melo])

HSP 1 Score: 313.2 bits (801), Expect = 5.4e-82
Identity = 159/165 (96.36%), Postives = 164/165 (99.39%), Query Frame = 0 

Query: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGPDS 60
           MIR+VIVMNT+GKPRFAKFYDFQP+EKQQELIRSVYGVLCSRAEN+SNFVEAESIFG DS
Sbjct: 1   MIRSVIVMNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIFGSDS 60

Query: 61  RLVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMHTILD 120
           RLVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMH+ILD
Sbjct: 61  RLVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMHSILD 120

Query: 121 EIISGGQVLETSSSEVMKAVEEISKLETASNSINFVSKTVSGWRG 166
           EIISGGQVLETSSSEVMKAVEEISKLETASNSINFVSKTVSGWRG
Sbjct: 121 EIISGGQVLETSSSEVMKAVEEISKLETASNSINFVSKTVSGWRG 165

[Close]
BLAST of Cla97C07G134040 vs. NCBI nr
Match: XP_011655957.1 (PREDICTED: AP-3 complex subunit sigma [Cucumis sativus] >XP_011655958.1 PREDICTED: AP-3 complex subunit sigma [Cucumis sativus])

HSP 1 Score: 310.8 bits (795), Expect = 2.7e-81
Identity = 159/165 (96.36%), Postives = 162/165 (98.18%), Query Frame = 0 

Query: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGPDS 60
           MIR+VIVMNT+GKPRFAKFYDFQP+EKQQELIRSVYGVLCSRAENVSNFVE ESIFG DS
Sbjct: 1   MIRSVIVMNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENVSNFVETESIFGLDS 60

Query: 61  RLVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMHTILD 120
            LVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMHTILD
Sbjct: 61  HLVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMHTILD 120

Query: 121 EIISGGQVLETSSSEVMKAVEEISKLETASNSINFVSKTVSGWRG 166
           EIISGGQVLETSSSEVMKAVEEISKLETASNSINFVSKTVSGWRG
Sbjct: 121 EIISGGQVLETSSSEVMKAVEEISKLETASNSINFVSKTVSGWRG 165

[Close]
BLAST of Cla97C07G134040 vs. NCBI nr
Match: XP_022978569.1 (AP-3 complex subunit sigma-like [Cucurbita maxima])

HSP 1 Score: 310.8 bits (795), Expect = 2.7e-81
Identity = 158/165 (95.76%), Postives = 164/165 (99.39%), Query Frame = 0 

Query: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGPDS 60
           MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSV+GVLCSRAENVSNFVEAESIFGPDS
Sbjct: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVHGVLCSRAENVSNFVEAESIFGPDS 60

Query: 61  RLVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMHTILD 120
           R+VYKHFATLYFV VFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNY+KMH+ILD
Sbjct: 61  RVVYKHFATLYFVFVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYTKMHSILD 120

Query: 121 EIISGGQVLETSSSEVMKAVEEISKLETASNSINFVSKTVSGWRG 166
           EIISGGQVLETSS+EV+KAVEEISKLETASNSINFVSKTVSGWRG
Sbjct: 121 EIISGGQVLETSSAEVVKAVEEISKLETASNSINFVSKTVSGWRG 165

[Close]
BLAST of Cla97C07G134040 vs. NCBI nr
Match: XP_022950395.1 (AP-3 complex subunit sigma-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 308.9 bits (790), Expect = 1.0e-80
Identity = 157/165 (95.15%), Postives = 164/165 (99.39%), Query Frame = 0 

Query: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGPDS 60
           MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSV+GVLCSRAEN+SNFVEAESIFGPDS
Sbjct: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVHGVLCSRAENLSNFVEAESIFGPDS 60

Query: 61  RLVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMHTILD 120
           RLVYKHFATLYFV VFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVF+Y+KMH+ILD
Sbjct: 61  RLVYKHFATLYFVFVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFHYTKMHSILD 120

Query: 121 EIISGGQVLETSSSEVMKAVEEISKLETASNSINFVSKTVSGWRG 166
           EIISGGQVLETSS+EV+KAVEEISKLETASNSINFVSKTVSGWRG
Sbjct: 121 EIISGGQVLETSSAEVVKAVEEISKLETASNSINFVSKTVSGWRG 165

[Close]
BLAST of Cla97C07G134040 vs. NCBI nr
Match: XP_022159031.1 (AP-3 complex subunit sigma [Momordica charantia] >XP_022159032.1 AP-3 complex subunit sigma [Momordica charantia] >XP_022159033.1 AP-3 complex subunit sigma [Momordica charantia] >XP_022159034.1 AP-3 complex subunit sigma [Momordica charantia])

HSP 1 Score: 305.1 bits (780), Expect = 1.5e-79
Identity = 157/165 (95.15%), Postives = 160/165 (96.97%), Query Frame = 0 

Query: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGPDS 60
           MIRAVIVMNTQGKPRFAKFYDFQPVEKQQ+LIRSVYGVL SRAENVSNFVEAESIFG DS
Sbjct: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQDLIRSVYGVLSSRAENVSNFVEAESIFGXDS 60

Query: 61  RLVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMHTILD 120
           RLVYKHFATLYFV VFN SENELAMLDLIQVFVETLDKCFKNVCELDLV+NYSKMHTILD
Sbjct: 61  RLVYKHFATLYFVFVFNGSENELAMLDLIQVFVETLDKCFKNVCELDLVYNYSKMHTILD 120

Query: 121 EIISGGQVLETSSSEVMKAVEEISKLETASNSINFVSKTVSGWRG 166
           EIISGGQVLETSSSEVMKAVEEISKLET SN+INFVSKTVSGWRG
Sbjct: 121 EIISGGQVLETSSSEVMKAVEEISKLETNSNAINFVSKTVSGWRG 165

[Close]
BLAST of Cla97C07G134040 vs. TrEMBL
Match: tr|A0A1S3BT37|A0A1S3BT37_CUCME (AP complex subunit sigma OS=Cucumis melo OX=3656 GN=LOC103493438 PE=3 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 3.6e-82
Identity = 159/165 (96.36%), Postives = 164/165 (99.39%), Query Frame = 0 

Query: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGPDS 60
           MIR+VIVMNT+GKPRFAKFYDFQP+EKQQELIRSVYGVLCSRAEN+SNFVEAESIFG DS
Sbjct: 1   MIRSVIVMNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIFGSDS 60

Query: 61  RLVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMHTILD 120
           RLVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMH+ILD
Sbjct: 61  RLVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMHSILD 120

Query: 121 EIISGGQVLETSSSEVMKAVEEISKLETASNSINFVSKTVSGWRG 166
           EIISGGQVLETSSSEVMKAVEEISKLETASNSINFVSKTVSGWRG
Sbjct: 121 EIISGGQVLETSSSEVMKAVEEISKLETASNSINFVSKTVSGWRG 165

[Close]
BLAST of Cla97C07G134040 vs. TrEMBL
Match: tr|A0A2I4F470|A0A2I4F470_9ROSI (AP complex subunit sigma OS=Juglans regia OX=51240 GN=LOC108995339 PE=3 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 1.9e-75
Identity = 148/165 (89.70%), Postives = 157/165 (95.15%), Query Frame = 0 

Query: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGPDS 60
           MIRAV+VMNTQGKPR AKFYD QPV+KQQELIRSV+GVLCSRAENVSNFVEA+SIFGPDS
Sbjct: 1   MIRAVMVMNTQGKPRLAKFYDSQPVDKQQELIRSVFGVLCSRAENVSNFVEADSIFGPDS 60

Query: 61  RLVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMHTILD 120
           R+VYKHFATLYFVLVF+SSENELAMLDLIQV VETLDKCFKNVCELDLVFNYSK+HTILD
Sbjct: 61  RIVYKHFATLYFVLVFDSSENELAMLDLIQVLVETLDKCFKNVCELDLVFNYSKIHTILD 120

Query: 121 EIISGGQVLETSSSEVMKAVEEISKLETASNSINFVSKTVSGWRG 166
           EI  GGQVLETSS+EVMKAVEEISKLETASNSI  V K+VSGWRG
Sbjct: 121 EIFFGGQVLETSSAEVMKAVEEISKLETASNSITLVPKSVSGWRG 165

[Close]
BLAST of Cla97C07G134040 vs. TrEMBL
Match: tr|A0A061DFS8|A0A061DFS8_THECC (AP complex subunit sigma OS=Theobroma cacao OX=3641 GN=TCM_000388 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 8.9e-73
Identity = 141/164 (85.98%), Postives = 154/164 (93.90%), Query Frame = 0 

Query: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGPDS 60
           MI+AV+VMNTQGKPR AKFY++ PVEKQQELIRSV+ VLCSRAENVSNF+EAESIFGPDS
Sbjct: 1   MIKAVMVMNTQGKPRLAKFYEYLPVEKQQELIRSVFAVLCSRAENVSNFIEAESIFGPDS 60

Query: 61  RLVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMHTILD 120
           RLVYKHFATLYFV VF+SSENELA+LDLIQVFVETLDKCFKNVCELD+VFNYSKMHTILD
Sbjct: 61  RLVYKHFATLYFVFVFDSSENELAVLDLIQVFVETLDKCFKNVCELDIVFNYSKMHTILD 120

Query: 121 EIISGGQVLETSSSEVMKAVEEISKLETASNSINFVSKTVSGWR 165
           EII GGQVLETSS+EVMKAVEEISKLE ASN+I  + K+ SGWR
Sbjct: 121 EIIFGGQVLETSSTEVMKAVEEISKLEAASNAITLIPKSASGWR 164

[Close]
BLAST of Cla97C07G134040 vs. TrEMBL
Match: tr|M5VR99|M5VR99_PRUPE (AP complex subunit sigma OS=Prunus persica OX=3760 GN=PRUPE_7G154700 PE=3 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 1.5e-72
Identity = 143/164 (87.20%), Postives = 155/164 (94.51%), Query Frame = 0 

Query: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGPDS 60
           MIRAV+V+NTQGKPR AKFY+FQPVEKQQE IRSVYGVL SRAENVSNFV+AESIFGPD+
Sbjct: 1   MIRAVMVINTQGKPRLAKFYEFQPVEKQQEHIRSVYGVLSSRAENVSNFVDAESIFGPDT 60

Query: 61  RLVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMHTILD 120
           RLVYKHFATLYFV VF+SSENELAMLDLIQVFVETLDKCFKNVCELD+V NYSKMHT+LD
Sbjct: 61  RLVYKHFATLYFVFVFDSSENELAMLDLIQVFVETLDKCFKNVCELDVVLNYSKMHTVLD 120

Query: 121 EIISGGQVLETSSSEVMKAVEEISKLETASNSINFVSKTVSGWR 165
           EII GGQVLETSS+EVMKAVEEISKLETASN+I+ V K+VS WR
Sbjct: 121 EIIFGGQVLETSSTEVMKAVEEISKLETASNAISLVPKSVSAWR 164

[Close]
BLAST of Cla97C07G134040 vs. TrEMBL
Match: tr|V4SP93|V4SP93_9ROSI (AP complex subunit sigma OS=Citrus clementina OX=85681 GN=CICLE_v10026648mg PE=3 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 1.5e-72
Identity = 141/164 (85.98%), Postives = 156/164 (95.12%), Query Frame = 0 

Query: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGPDS 60
           MI++V+VMNTQGKPR AKFYDFQPVEKQQELIRSV+GVLC RA+NVSNFVEA+SIFGP +
Sbjct: 1   MIKSVMVMNTQGKPRLAKFYDFQPVEKQQELIRSVFGVLCGRADNVSNFVEADSIFGPGT 60

Query: 61  RLVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMHTILD 120
           RLVYKHFATLYFV VF+SSENELAMLDLIQVFVETLDKCFKNVCELD+V+NYSK+HTILD
Sbjct: 61  RLVYKHFATLYFVFVFDSSENELAMLDLIQVFVETLDKCFKNVCELDIVYNYSKLHTILD 120

Query: 121 EIISGGQVLETSSSEVMKAVEEISKLETASNSINFVSKTVSGWR 165
           EII GGQVLETSS EV+KAVEEISKLE+ASN+I  VSK+VSGWR
Sbjct: 121 EIIFGGQVLETSSIEVIKAVEEISKLESASNAIALVSKSVSGWR 164

[Close]
BLAST of Cla97C07G134040 vs. Swiss-Prot
Match: sp|Q8VZ37|AP3S_ARATH (AP-3 complex subunit sigma OS=Arabidopsis thaliana OX=3702 GN=At3g50860 PE=2 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 7.0e-73
Identity = 136/165 (82.42%), Postives = 151/165 (91.52%), Query Frame = 0 

Query: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGPDS 60
           MI+AV++MNTQGKPR AKFYD+ PVEKQQELIR V+ VLCSR ENVSNF+E ES+FGPDS
Sbjct: 1   MIKAVMMMNTQGKPRLAKFYDYLPVEKQQELIRGVFSVLCSRPENVSNFLEIESLFGPDS 60

Query: 61  RLVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMHTILD 120
           RLVYKH+ATLYFVLVF+ SENELAMLDLIQV VETLDKCF NVCELD+VFNYSKMH +LD
Sbjct: 61  RLVYKHYATLYFVLVFDGSENELAMLDLIQVLVETLDKCFSNVCELDIVFNYSKMHAVLD 120

Query: 121 EIISGGQVLETSSSEVMKAVEEISKLETASNSINFVSKTVSGWRG 166
           EI+ GGQVLETSS+EVMKAVEEISKLE ASNSI+ V K+VSGWRG
Sbjct: 121 EIVFGGQVLETSSAEVMKAVEEISKLEAASNSISLVPKSVSGWRG 165

[Close]
BLAST of Cla97C07G134040 vs. Swiss-Prot
Match: sp|Q1JQA3|AP3S2_BOVIN (AP-3 complex subunit sigma-2 OS=Bos taurus OX=9913 GN=AP3S2 PE=2 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 5.1e-39
Identity = 76/155 (49.03%), Postives = 113/155 (72.90%), Query Frame = 0 

Query: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIF-GPD 60
           MI+A++V N  GKPR  +FY   P E QQ+++R  + ++  R +N+ NF+E  S+  G D
Sbjct: 1   MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD 60

Query: 61  SRLVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMHTIL 120
            +L+Y+H+ATLYFV   +SSE+EL +LDLIQVFVETLDKCF+NVCELDL+F+  K+H IL
Sbjct: 61  YKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYIL 120

Query: 121 DEIISGGQVLETSSSEVMKAVEEISKLETASNSIN 155
            E++ GG VLET+ +E++  +E  ++LE +   ++
Sbjct: 121 QEVVMGGMVLETNMNEIVAQIEAQNRLEKSEGGLS 155

[Close]
BLAST of Cla97C07G134040 vs. Swiss-Prot
Match: sp|P59780|AP3S2_HUMAN (AP-3 complex subunit sigma-2 OS=Homo sapiens OX=9606 GN=AP3S2 PE=2 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 5.1e-39
Identity = 76/155 (49.03%), Postives = 113/155 (72.90%), Query Frame = 0 

Query: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIF-GPD 60
           MI+A++V N  GKPR  +FY   P E QQ+++R  + ++  R +N+ NF+E  S+  G D
Sbjct: 1   MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD 60

Query: 61  SRLVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMHTIL 120
            +L+Y+H+ATLYFV   +SSE+EL +LDLIQVFVETLDKCF+NVCELDL+F+  K+H IL
Sbjct: 61  YKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYIL 120

Query: 121 DEIISGGQVLETSSSEVMKAVEEISKLETASNSIN 155
            E++ GG VLET+ +E++  +E  ++LE +   ++
Sbjct: 121 QEVVMGGMVLETNMNEIVAQIEAQNRLEKSEGGLS 155

[Close]
BLAST of Cla97C07G134040 vs. Swiss-Prot
Match: sp|Q8BSZ2|AP3S2_MOUSE (AP-3 complex subunit sigma-2 OS=Mus musculus OX=10090 GN=Ap3s2 PE=1 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 5.1e-39
Identity = 76/155 (49.03%), Postives = 113/155 (72.90%), Query Frame = 0 

Query: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIF-GPD 60
           MI+A++V N  GKPR  +FY   P E QQ+++R  + ++  R +N+ NF+E  S+  G D
Sbjct: 1   MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD 60

Query: 61  SRLVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMHTIL 120
            +L+Y+H+ATLYFV   +SSE+EL +LDLIQVFVETLDKCF+NVCELDL+F+  K+H IL
Sbjct: 61  YKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYIL 120

Query: 121 DEIISGGQVLETSSSEVMKAVEEISKLETASNSIN 155
            E++ GG VLET+ +E++  +E  ++LE +   ++
Sbjct: 121 QEVVMGGMVLETNMNEIVAQIEAQNRLEKSEGGLS 155

[Close]
BLAST of Cla97C07G134040 vs. Swiss-Prot
Match: sp|Q5RDP9|AP3S2_PONAB (AP-3 complex subunit sigma-2 OS=Pongo abelii OX=9601 GN=AP3S2 PE=2 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 5.1e-39
Identity = 76/155 (49.03%), Postives = 113/155 (72.90%), Query Frame = 0 

Query: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIF-GPD 60
           MI+A++V N  GKPR  +FY   P E QQ+++R  + ++  R +N+ NF+E  S+  G D
Sbjct: 1   MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD 60

Query: 61  SRLVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMHTIL 120
            +L+Y+H+ATLYFV   +SSE+EL +LDLIQVFVETLDKCF+NVCELDL+F+  K+H IL
Sbjct: 61  YKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYIL 120

Query: 121 DEIISGGQVLETSSSEVMKAVEEISKLETASNSIN 155
            E++ GG VLET+ +E++  +E  ++LE +   ++
Sbjct: 121 QEVVMGGMVLETNMNEIVAQIEAQNRLEKSEGGLS 155

[Close]
BLAST of Cla97C07G134040 vs. TAIR10
Match: AT3G50860.1 (Clathrin adaptor complex small chain family protein)

HSP 1 Score: 274.6 bits (701), Expect = 3.9e-74
Identity = 136/165 (82.42%), Postives = 151/165 (91.52%), Query Frame = 0 

Query: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGPDS 60
           MI+AV++MNTQGKPR AKFYD+ PVEKQQELIR V+ VLCSR ENVSNF+E ES+FGPDS
Sbjct: 1   MIKAVMMMNTQGKPRLAKFYDYLPVEKQQELIRGVFSVLCSRPENVSNFLEIESLFGPDS 60

Query: 61  RLVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMHTILD 120
           RLVYKH+ATLYFVLVF+ SENELAMLDLIQV VETLDKCF NVCELD+VFNYSKMH +LD
Sbjct: 61  RLVYKHYATLYFVLVFDGSENELAMLDLIQVLVETLDKCFSNVCELDIVFNYSKMHAVLD 120

Query: 121 EIISGGQVLETSSSEVMKAVEEISKLETASNSINFVSKTVSGWRG 166
           EI+ GGQVLETSS+EVMKAVEEISKLE ASNSI+ V K+VSGWRG
Sbjct: 121 EIVFGGQVLETSSAEVMKAVEEISKLEAASNSISLVPKSVSGWRG 165

[Close]
BLAST of Cla97C07G134040 vs. TAIR10
Match: AT1G47830.1 (SNARE-like superfamily protein)

HSP 1 Score: 106.7 bits (265), Expect = 1.4e-23
Identity = 56/147 (38.10%), Postives = 93/147 (63.27%), Query Frame = 0 

Query: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGPDS 60
           MIR +++ N QGK R AK+Y      ++ ++   V+ ++ +R    +NFVE  +      
Sbjct: 1   MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDAKFTNFVEFRT-----H 60

Query: 61  RLVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMHTILD 120
           +++Y+ +A L+F +  + ++NELA L+ I +FVE LD  F NVCELDLVFN+ K++ ILD
Sbjct: 61  KVIYRRYAGLFFSVCVDITDNELAYLESIHLFVEILDHFFSNVCELDLVFNFHKVYLILD 120

Query: 121 EIISGGQVLETSSSEVMKAVEEISKLE 148
           E I  G++ ETS   +++ + E+ KL+
Sbjct: 121 EFILAGELQETSKRAIIERMSELEKLQ 142

[Close]
BLAST of Cla97C07G134040 vs. TAIR10
Match: AT2G17380.1 (associated protein 19)

HSP 1 Score: 104.0 bits (258), Expect = 9.1e-23
Identity = 55/162 (33.95%), Postives = 99/162 (61.11%), Query Frame = 0 

Query: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGPDS 60
           MI  V++++ QGK R  K+Y     +++ ++IR + GV+ +R   + NF+E         
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYTQKERSKVIRELSGVILNRGPKLCNFIEWRGY----- 60

Query: 61  RLVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMHTILD 120
           ++VYK +A+LYF +  + ++NEL +L++I  +VE LD+ F +VCELDL+FN+ K + ILD
Sbjct: 61  KVVYKRYASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILD 120

Query: 121 EIISGGQVLETSSSEVMKAVEEISKL-ETASNSINFVSKTVS 162
           E++  G++ E+S   V + +    +L E A    + +S  ++
Sbjct: 121 ELLIAGELQESSKKTVARIISAQDQLVEVAKEEASSISNIIA 157

[Close]
BLAST of Cla97C07G134040 vs. TAIR10
Match: AT4G35410.2 (Clathrin adaptor complex small chain family protein)

HSP 1 Score: 104.0 bits (258), Expect = 9.1e-23
Identity = 56/162 (34.57%), Postives = 98/162 (60.49%), Query Frame = 0 

Query: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGPDS 60
           MI  V++++ QGK R  K+Y     +++ ++IR + GV+ +R   + NFVE         
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGY----- 60

Query: 61  RLVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMHTILD 120
           ++VYK +A+LYF +  +  +NEL +L++I  +VE LD+ F +VCELDL+FN+ K + ILD
Sbjct: 61  KVVYKRYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILD 120

Query: 121 EIISGGQVLETSSSEVMKAVEEISKL-ETASNSINFVSKTVS 162
           E++  G++ E+S   V + +    +L E A    + +S  ++
Sbjct: 121 ELLIAGELQESSKKTVARIISAQDQLVEVAKEEASSISNIIA 157

[Close]
BLAST of Cla97C07G134040 vs. TAIR10
Match: AT2G19790.1 (SNARE-like superfamily protein)

HSP 1 Score: 100.9 bits (250), Expect = 7.7e-22
Identity = 48/144 (33.33%), Postives = 94/144 (65.28%), Query Frame = 0 

Query: 2   IRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGPDSR 61
           IR ++++N QG+ R A++Y++  +E+++ L   +     +R +   +FVE  +      +
Sbjct: 3   IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARNDQQCSFVEHRNY-----K 62

Query: 62  LVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMHTILDE 121
           +VY+ +A+L+F++  +  ENELA+L+ I + VET+DK F NVCELD++F+  K H +L+E
Sbjct: 63  IVYRRYASLFFMVGVDDDENELAILEFIHLLVETMDKHFGNVCELDIMFHLEKAHFMLEE 122

Query: 122 IISGGQVLETSSSEVMKAVEEISK 146
           ++  G ++ETS + ++  ++ + K
Sbjct: 123 MVMNGCIVETSKANILSPIQLMDK 141

The following BLAST results are available for this feature:
BLAST of Cla97C07G134040 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008452384.15.4e-8296.36PREDICTED: AP-3 complex subunit sigma [Cucumis melo] >XP_008452386.1 PREDICTED: ... [more]
XP_011655957.12.7e-8196.36PREDICTED: AP-3 complex subunit sigma [Cucumis sativus] >XP_011655958.1 PREDICTE... [more]
XP_022978569.12.7e-8195.76AP-3 complex subunit sigma-like [Cucurbita maxima][more]
XP_022950395.11.0e-8095.15AP-3 complex subunit sigma-like isoform X2 [Cucurbita moschata][more]
XP_022159031.11.5e-7995.15AP-3 complex subunit sigma [Momordica charantia] >XP_022159032.1 AP-3 complex su... [more]
BLAST of Cla97C07G134040 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BT37|A0A1S3BT37_CUCME3.6e-8296.36AP complex subunit sigma OS=Cucumis melo OX=3656 GN=LOC103493438 PE=3 SV=1[more]
tr|A0A2I4F470|A0A2I4F470_9ROSI1.9e-7589.70AP complex subunit sigma OS=Juglans regia OX=51240 GN=LOC108995339 PE=3 SV=1[more]
tr|A0A061DFS8|A0A061DFS8_THECC8.9e-7385.98AP complex subunit sigma OS=Theobroma cacao OX=3641 GN=TCM_000388 PE=3 SV=1[more]
tr|M5VR99|M5VR99_PRUPE1.5e-7287.20AP complex subunit sigma OS=Prunus persica OX=3760 GN=PRUPE_7G154700 PE=3 SV=1[more]
tr|V4SP93|V4SP93_9ROSI1.5e-7285.98AP complex subunit sigma OS=Citrus clementina OX=85681 GN=CICLE_v10026648mg PE=3... [more]
BLAST of Cla97C07G134040 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8VZ37|AP3S_ARATH7.0e-7382.42AP-3 complex subunit sigma OS=Arabidopsis thaliana OX=3702 GN=At3g50860 PE=2 SV=... [more]
sp|Q1JQA3|AP3S2_BOVIN5.1e-3949.03AP-3 complex subunit sigma-2 OS=Bos taurus OX=9913 GN=AP3S2 PE=2 SV=1[more]
sp|P59780|AP3S2_HUMAN5.1e-3949.03AP-3 complex subunit sigma-2 OS=Homo sapiens OX=9606 GN=AP3S2 PE=2 SV=1[more]
sp|Q8BSZ2|AP3S2_MOUSE5.1e-3949.03AP-3 complex subunit sigma-2 OS=Mus musculus OX=10090 GN=Ap3s2 PE=1 SV=1[more]
sp|Q5RDP9|AP3S2_PONAB5.1e-3949.03AP-3 complex subunit sigma-2 OS=Pongo abelii OX=9601 GN=AP3S2 PE=2 SV=1[more]
BLAST of Cla97C07G134040 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G50860.13.9e-7482.42Clathrin adaptor complex small chain family protein[more]
AT1G47830.11.4e-2338.10SNARE-like superfamily protein[more]
AT2G17380.19.1e-2333.95associated protein 19[more]
AT4G35410.29.1e-2334.57Clathrin adaptor complex small chain family protein[more]
AT2G19790.17.7e-2233.33SNARE-like superfamily protein[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0030117membrane coat
GO:0030123AP-3 adaptor complex
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
GO:0006886intracellular protein transport
GO:0015031protein transport
Vocabulary: Molecular Function
TermDefinition
GO:0008565protein transporter activity
Vocabulary: INTERPRO
TermDefinition
IPR011012Longin-like_dom_sf
IPR000804Clathrin_sm-chain_CS
IPR027155APS3
IPR016635AP_complex_ssu
IPR022775AP_mu_sigma_su
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
biological_process GO:0015031 protein transport
biological_process GO:0016192 vesicle-mediated transport
biological_process GO:0006810 transport
cellular_component GO:0030123 AP-3 adaptor complex
cellular_component GO:0016020 membrane
cellular_component GO:0030117 membrane coat
cellular_component GO:0030125 clathrin vesicle coat
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0043231 intracellular membrane-bounded organelle
molecular_function GO:0008565 protein transporter activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C07G134040.1Cla97C07G134040.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022775AP complex, mu/sigma subunitPFAMPF01217Clat_adaptor_scoord: 1..146
e-value: 5.6E-49
score: 165.6
IPR016635Adaptor protein complex, sigma subunitPIRSFPIRSF015588AP_complex_sigmacoord: 1..157
e-value: 5.2E-56
score: 186.7
IPR016635Adaptor protein complex, sigma subunitPANTHERPTHR11753CLATHRIN COAT ASSEMBLY PROTEINcoord: 1..152
NoneNo IPR availableGENE3DG3DSA:3.30.450.60coord: 1..161
e-value: 4.5E-60
score: 203.8
IPR027155AP-3 complex subunit sigmaPANTHERPTHR11753:SF2ADAPTOR PROTEIN COMPLEX AP-3 SMALL CHAIN SIGMA3coord: 1..152
IPR000804Clathrin adaptor complex, small chainPROSITEPS00989CLAT_ADAPTOR_Scoord: 62..72
IPR011012Longin-like domain superfamilySUPERFAMILYSSF64356SNARE-likecoord: 1..145

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C07G134040Cla011732Watermelon (97103) v1wmwmbB170
Cla97C07G134040Csa5G628670Cucumber (Chinese Long) v2cuwmbB393
Cla97C07G134040MELO3C016632Melon (DHL92) v3.5.1mewmbB496
Cla97C07G134040ClCG07G005920Watermelon (Charleston Gray)wcgwmbB307
Cla97C07G134040CSPI05G27990Wild cucumber (PI 183967)cpiwmbB413
Cla97C07G134040Cucsa.029950Cucumber (Gy14) v1cgywmbB001
Cla97C07G134040Lsi04G011160Bottle gourd (USVL1VR-Ls)lsiwmbB297
Cla97C07G134040CsGy5G027380Cucumber (Gy14) v2cgybwmbB377
Cla97C07G134040MELO3C016632.2Melon (DHL92) v3.6.1medwmbB489
Cla97C07G134040CsaV3_5G037100Cucumber (Chinese Long) v3cucwmbB409
Cla97C07G134040Bhi07G000315Wax gourdwgowmbB538
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C07G134040Silver-seed gourdcarwmbB0183
Cla97C07G134040Silver-seed gourdcarwmbB0700
Cla97C07G134040Cucurbita maxima (Rimu)cmawmbB779
Cla97C07G134040Cucurbita maxima (Rimu)cmawmbB780
Cla97C07G134040Cucurbita maxima (Rimu)cmawmbB781
Cla97C07G134040Cucurbita moschata (Rifu)cmowmbB753
Cla97C07G134040Cucurbita moschata (Rifu)cmowmbB754
Cla97C07G134040Cucurbita moschata (Rifu)cmowmbB755
Cla97C07G134040Melon (DHL92) v3.6.1medwmbB065
Cla97C07G134040Melon (DHL92) v3.5.1mewmbB032
Cla97C07G134040Melon (DHL92) v3.5.1mewmbB070
Cla97C07G134040Watermelon (Charleston Gray)wcgwmbB120
Cla97C07G134040Watermelon (97103) v1wmwmbB278
Cla97C07G134040Watermelon (97103) v1wmwmbB180
Cla97C07G134040Wax gourdwgowmbB105