Cla97C07G132860 (gene) Watermelon (97103) v2

Overview
NameCla97C07G132860
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionUnknown protein
LocationCla97Chr07 : 5114513 .. 5115013 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTAAGCGCTTTAGTTGTCTGGATATATGGATTGAGCTGGGCAGGGTGTTGTCTAATGATGATTTGGCTTGTGCTTGTATCACTAGTGGATGATCGATGTGAGTGGATTGTTGACTACTTGAATGGTTTTGGTAAGATCCATTTTGAGCCTTCTTGTTCACAGATTCCTATCAATGCTAGGAATGATCAGTTGGACAAAAATCTTGACATTATTCATTGTGATGCTGCTTTTAAACTTGGTGATCACATAGTGGGAACTGGTGGGGTTGTTGGTTCTCCGTTAGGCGAGATCTTAGCCTCCTTGAGTGGGTTTAGAGATTTCTCTGAGAATGTTTTATGTGCCAAAGCTTTTGTTGTTTTTGAGGGGCTTCGTTTGGCTAAAAGAATGAGTCTTTCTCATTTGTTAGTTTTGTCTAATTCATTGGTATTGGTTCAGATTTTGGAAGGCATTTTAGCATGTAAAGTTGAAGTGGCAAATTGTGTTGCTGATATTAAATAG

mRNA sequence

ATGCTAAGCGCTTTAGTTGTCTGGATATATGGATTGAGCTGGGCAGGGTGTTGTCTAATGATGATTTGGCTTGTGCTTGTATCACTAGTGGATGATCGATGTGAGTGGATTGTTGACTACTTGAATGGTTTTGGTAAGATCCATTTTGAGCCTTCTTGTTCACAGATTCCTATCAATGCTAGGAATGATCAGTTGGACAAAAATCTTGACATTATTCATTGTGATGCTGCTTTTAAACTTGGTGATCACATAGTGGGAACTGGTGGGGTTGTTGGTTCTCCGTTAGGCGAGATCTTAGCCTCCTTGAGTGGGTTTAGAGATTTCTCTGAGAATGTTTTATGTGCCAAAGCTTTTGTTGTTTTTGAGGGGCTTCGTTTGGCTAAAAGAATGAGTCTTTCTCATTTGTTAGTTTTGTCTAATTCATTGGTATTGGTTCAGATTTTGGAAGGCATTTTAGCATGTAAAGTTGAAGTGGCAAATTGTGTTGCTGATATTAAATAG

Coding sequence (CDS)

ATGCTAAGCGCTTTAGTTGTCTGGATATATGGATTGAGCTGGGCAGGGTGTTGTCTAATGATGATTTGGCTTGTGCTTGTATCACTAGTGGATGATCGATGTGAGTGGATTGTTGACTACTTGAATGGTTTTGGTAAGATCCATTTTGAGCCTTCTTGTTCACAGATTCCTATCAATGCTAGGAATGATCAGTTGGACAAAAATCTTGACATTATTCATTGTGATGCTGCTTTTAAACTTGGTGATCACATAGTGGGAACTGGTGGGGTTGTTGGTTCTCCGTTAGGCGAGATCTTAGCCTCCTTGAGTGGGTTTAGAGATTTCTCTGAGAATGTTTTATGTGCCAAAGCTTTTGTTGTTTTTGAGGGGCTTCGTTTGGCTAAAAGAATGAGTCTTTCTCATTTGTTAGTTTTGTCTAATTCATTGGTATTGGTTCAGATTTTGGAAGGCATTTTAGCATGTAAAGTTGAAGTGGCAAATTGTGTTGCTGATATTAAATAG

Protein sequence

MLSALVVWIYGLSWAGCCLMMIWLVLVSLVDDRCEWIVDYLNGFGKIHFEPSCSQIPINARNDQLDKNLDIIHCDAAFKLGDHIVGTGGVVGSPLGEILASLSGFRDFSENVLCAKAFVVFEGLRLAKRMSLSHLLVLSNSLVLVQILEGILACKVEVANCVADIK
Homology
[Close]
BLAST of Cla97C07G132860 vs. NCBI nr
Match: GAU51832.1 (hypothetical protein TSUD_324470 [Trifolium subterraneum])

HSP 1 Score: 54.7 bits (130), Expect = 3.5e-04
Identity = 30/72 (41.67%), Postives = 45/72 (62.50%), Query Frame = 0 

Query: 80  LGDHI-VGTGGVVGSPLGEILASLSGFRDFSENVLCAKAFVVFEGLRLAKRMSLSHLLVL 139
           LG HI  G GGV+ + LG   +  SGF   S ++L A  FV+++GL LAK M++  L+  
Sbjct: 87  LGSHIRAGFGGVIINDLGYYFSGFSGFIQGSSDILLAALFVIYQGLTLAKNMAIDVLVCY 146

Query: 140 SNSLVLVQILEG 151
           SNSL  + +++G
Sbjct: 147 SNSLHCINLIKG 158

The following BLAST results are available for this feature:
BLAST of Cla97C07G132860 vs. NCBI nr
Match NameE-valueIdentityDescription
GAU51832.13.5e-0441.67hypothetical protein TSUD_324470 [Trifolium subterraneum][more]
BLAST of Cla97C07G132860 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of Cla97C07G132860 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C07G132860 vs. TAIR10
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C07G132860.1Cla97C07G132860.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C07G132860Cla000332Watermelon (97103) v1wmwmbB167
Cla97C07G132860ClCG07G004400Watermelon (Charleston Gray)wcgwmbB307
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C07G132860Watermelon (97103) v2wmbwmbB107
Cla97C07G132860Silver-seed gourdcarwmbB0091
Cla97C07G132860Silver-seed gourdcarwmbB0540
Cla97C07G132860Silver-seed gourdcarwmbB0700
Cla97C07G132860Cucumber (Gy14) v2cgybwmbB375
Cla97C07G132860Cucumber (Gy14) v2cgybwmbB461
Cla97C07G132860Cucumber (Gy14) v1cgywmbB236
Cla97C07G132860Cucumber (Gy14) v1cgywmbB637
Cla97C07G132860Cucurbita maxima (Rimu)cmawmbB596
Cla97C07G132860Cucurbita maxima (Rimu)cmawmbB658
Cla97C07G132860Cucurbita maxima (Rimu)cmawmbB780
Cla97C07G132860Cucurbita maxima (Rimu)cmawmbB781
Cla97C07G132860Cucurbita moschata (Rifu)cmowmbB571
Cla97C07G132860Cucurbita moschata (Rifu)cmowmbB633
Cla97C07G132860Cucurbita moschata (Rifu)cmowmbB754
Cla97C07G132860Cucurbita moschata (Rifu)cmowmbB755
Cla97C07G132860Wild cucumber (PI 183967)cpiwmbB412
Cla97C07G132860Wild cucumber (PI 183967)cpiwmbB510
Cla97C07G132860Cucumber (Chinese Long) v3cucwmbB407
Cla97C07G132860Cucumber (Chinese Long) v3cucwmbB502
Cla97C07G132860Cucumber (Chinese Long) v2cuwmbB392
Cla97C07G132860Cucumber (Chinese Long) v2cuwmbB484
Cla97C07G132860Bottle gourd (USVL1VR-Ls)lsiwmbB069
Cla97C07G132860Bottle gourd (USVL1VR-Ls)lsiwmbB298
Cla97C07G132860Melon (DHL92) v3.6.1medwmbB064
Cla97C07G132860Melon (DHL92) v3.5.1mewmbB069
Cla97C07G132860Watermelon (Charleston Gray)wcgwmbB165
Cla97C07G132860Watermelon (97103) v1wmwmbB346
Cla97C07G132860Wax gourdwgowmbB388
Cla97C07G132860Wax gourdwgowmbB538