Cla97C07G131350 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C07G131350
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	DnaJ domain
Location	Cla97Chr07 : 2883293 .. 2884254 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTGTATTTGGTTTAATTTCCCAATTAATGCATATACCTGTTCTTGATCCACACACTAAGGTTTGTGCTTCTTTGGATTATATCTTTTGAAGCATGACTCTAAATTGAACTTCATATATATAACAATCTTAAGTGCATTTTGGCAACTGGGTTTGGCTTGATTTTTTAAAAAAAATTGTGATTTATGTCATTTGATAAGCATTTTTGTGATTATCTTTGGCATCATCAGCGATGCTTAGTTTGGTTTGTTTCTGATTGCAATGACAGTTACCTTTCATTGCTAATTTCTAGTCTGTTCATTCGCAATGCAGGCACTATCAAGGCTTACAATTCAAACTCTAGAGTTGATTTTGTCTCTTCTTCTACTAAAGGTCATTGGCAATACAGATTCAGAGACTTGTTTAGAGATAATGAGTTATGCAGCAAAAGGAATTGGTTTTTTTGCATCAACTCTTGGAGTTGGGTTTCTTTTTTCCAATAGTTTTCCATACAGCACTTCTTGCAGAAAGAGTGATTGGGCCAAAGGTTAGCATGATGAATTTCTGTCAACTTTTGCCTTTTTCCATTGAATTTTCTTTTAGATCGCTTTGTAATAGCATTGTTTCGTATCAAAAGTATCAAGTTTATAGGACTACAAGGCATTGTTCTATCTACTGATCACATGTATAGAAGAATATTTAAATCATTTGGGGATAAGCTTTGAGTGGTTTTTATTGCTGCCATATAATCAAAACCATATTCATGAGATCATTGCCAATCTAGCAAGAATCTTTAAACATAGATTTTCTTGGGACTTCCAAATTTTATGGACTTTTGTATTCAAAAGATGGGATTTTGTGTTTACAAGATCATGATTCCACTGGATTGTAGGTTGTAAGCAACTCTGTGCTGAAGGCGATTATATTCTTGACAGCAGCAACATCTCAAGAGTAGCATACTTCACACGATCATCATCTTAA

mRNA sequence

ATGCTTGTATTTGGTTTAATTTCCCAATTAATGCATATACCTGTTCTTGATCCACACACTAAGGCACTATCAAGGCTTACAATTCAAACTCTAGAGTTGATTTTGTCTCTTCTTCTACTAAAGGTCATTGGCAATACAGATTCAGAGACTTGTTTAGAGATAATGAGTTATGCAGCAAAAGGAATTGGTTTTTTTGCATCAACTCTTGGAGTTGGGTTTCTTTTTTCCAATAGTTTTCCATACAGCACTTCTTGCAGAAAGAGTGATTGGGCCAAAGGTTGTAAGCAACTCTGTGCTGAAGGCGATTATATTCTTGACAGCAGCAACATCTCAAGAGTAGCATACTTCACACGATCATCATCTTAA

Coding sequence (CDS)

ATGCTTGTATTTGGTTTAATTTCCCAATTAATGCATATACCTGTTCTTGATCCACACACTAAGGCACTATCAAGGCTTACAATTCAAACTCTAGAGTTGATTTTGTCTCTTCTTCTACTAAAGGTCATTGGCAATACAGATTCAGAGACTTGTTTAGAGATAATGAGTTATGCAGCAAAAGGAATTGGTTTTTTTGCATCAACTCTTGGAGTTGGGTTTCTTTTTTCCAATAGTTTTCCATACAGCACTTCTTGCAGAAAGAGTGATTGGGCCAAAGGTTGTAAGCAACTCTGTGCTGAAGGCGATTATATTCTTGACAGCAGCAACATCTCAAGAGTAGCATACTTCACACGATCATCATCTTAA

Protein sequence

MLVFGLISQLMHIPVLDPHTKALSRLTIQTLELILSLLLLKVIGNTDSETCLEIMSYAAKGIGFFASTLGVGFLFSNSFPYSTSCRKSDWAKGCKQLCAEGDYILDSSNISRVAYFTRSSS

Homology

[Close]

BLAST of Cla97C07G131350 vs. NCBI nr
Match: XP_008461908.1 (PREDICTED: uncharacterized protein LOC103500400 isoform X1 [Cucumis melo])

HSP 1 Score: 76.3 bits (186), Expect = 8.2e-11
Identity = 56/120 (46.67%), Postives = 65/120 (54.17%), Query Frame = 0


Query: 6   LISQLMHIPVLDPHTKALSRLTIQTLELILSLLLLKVIGN---------TDSETCLEIMS 65
           L+SQLMH+P+LDP TKALSRL IQTLE IL+LLLLK+             D+E C     
Sbjct: 110 LVSQLMHMPILDPQTKALSRLAIQTLEFILTLLLLKLTAKPNYRFRNFFRDNELC----- 169

Query: 66  YAAKGIGFFASTLGVGFLFSNSFPYSTSCRKSDWAKGCKQLCAEGDYILDSSNISRVAYF 117
             +K    FAS  GVGFL S  F  S    +    K    L  +   ILD SNISR A F
Sbjct: 170 --SKRNWIFASAFGVGFLLSLVFLTSLLAERVIGPKAVSNLVLK--EILDCSNISRTACF 220

[Close]

BLAST of Cla97C07G131350 vs. NCBI nr
Match: XP_004139689.1 (PREDICTED: uncharacterized protein LOC101217192 isoform X1 [Cucumis sativus] >KGN44453.1 hypothetical protein Csa_7G291730 [Cucumis sativus])

HSP 1 Score: 75.9 bits (185), Expect = 1.1e-10
Identity = 56/120 (46.67%), Postives = 64/120 (53.33%), Query Frame = 0


Query: 6   LISQLMHIPVLDPHTKALSRLTIQTLELILSLLLLKVIGN---------TDSETCLEIMS 65
           L+S+LMH+P+LDP TKALSRL IQTLE IL+LLLLK+             D+E C     
Sbjct: 99  LVSKLMHVPILDPQTKALSRLAIQTLEFILTLLLLKLTAKPNYRFRYFFRDNELC----- 158

Query: 66  YAAKGIGFFASTLGVGFLFSNSFPYSTSCRKSDWAKGCKQLCAEGDYILDSSNISRVAYF 117
              K    FAS  GVGFLFS  F  S         K    L  +   ILD SNISR A F
Sbjct: 159 --NKRNWIFASAFGVGFLFSLVFLTSLLAESVIGPKAVSNLVLK--EILDCSNISRTACF 209

[Close]

BLAST of Cla97C07G131350 vs. NCBI nr
Match: XP_022147858.1 (uncharacterized protein LOC111016695 [Momordica charantia])

HSP 1 Score: 67.0 bits (162), Expect = 5.0e-08
Identity = 49/112 (43.75%), Postives = 61/112 (54.46%), Query Frame = 0


Query: 7   ISQLMHIPVLDPHTKALSRLTIQTLELILSLLLLKVIG--NTDSETCLEIMSYAAKGIGF 66
           +SQLMH PVLDP TKALSRL IQT+E I++L +LKV    N             ++    
Sbjct: 102 VSQLMHEPVLDPQTKALSRLAIQTIEFIVTLFILKVTAKPNYRFRNFFGDNKLGSERNWL 161

Query: 67  FASTLGVGFLFSNSFPYSTSCRKSDWAKGCKQLCAEGDYILDSSNISRVAYF 117
            AS +GVGFLF+  F  S    ++   K       +   ILDSSNISR A F
Sbjct: 162 LASAIGVGFLFTLVFLTSLLVERAIGPKAVNNPVLK--EILDSSNISRAACF 211

[Close]

BLAST of Cla97C07G131350 vs. NCBI nr
Match: XP_022952646.1 (uncharacterized protein LOC111455277 [Cucurbita moschata])

HSP 1 Score: 67.0 bits (162), Expect = 5.0e-08
Identity = 52/112 (46.43%), Postives = 58/112 (51.79%), Query Frame = 0


Query: 7   ISQLMHIPVLDPHTKALSRLTIQTLELILSLLLLKVIG--NTDSETCLEIMSYAAKGIGF 66
           +SQLM IPVLDP TKALSRL IQT+E I++LLLLKV    N          +   K    
Sbjct: 97  VSQLMRIPVLDPQTKALSRLGIQTVEFIVTLLLLKVTAKPNYRFRNFFRAHNLGGKRNWL 156

Query: 67  FASTLGVGFLFSNSFPYSTSCRKSDWAKGCKQLCAEGDYILDSSNISRVAYF 117
           FAS  G GFL S  F  S         K       +   ILDSSNISR A F
Sbjct: 157 FASAFGFGFLVSLVFLTSILAETVIGPKAVNSPVLK--EILDSSNISRAACF 206

[Close]

BLAST of Cla97C07G131350 vs. NCBI nr
Match: XP_023554557.1 (uncharacterized protein LOC111811763 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 67.0 bits (162), Expect = 5.0e-08
Identity = 52/112 (46.43%), Postives = 58/112 (51.79%), Query Frame = 0


Query: 7   ISQLMHIPVLDPHTKALSRLTIQTLELILSLLLLKVIG--NTDSETCLEIMSYAAKGIGF 66
           +SQLM IPVLDP TKALSRL IQT+E I++LLLLKV    N          +   K    
Sbjct: 97  VSQLMRIPVLDPQTKALSRLGIQTVEFIVTLLLLKVTAKPNYRFRNFFRAHNLGGKRNWL 156

Query: 67  FASTLGVGFLFSNSFPYSTSCRKSDWAKGCKQLCAEGDYILDSSNISRVAYF 117
           FAS  G GFL S  F  S         K       +   ILDSSNISR A F
Sbjct: 157 FASAFGFGFLVSLVFLTSILAETVVGPKAVNSPVLK--EILDSSNISRAACF 206

[Close]

BLAST of Cla97C07G131350 vs. TrEMBL
Match: tr|A0A1S3CFT6|A0A1S3CFT6_CUCME (uncharacterized protein LOC103500400 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500400 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 5.4e-11
Identity = 56/120 (46.67%), Postives = 65/120 (54.17%), Query Frame = 0


Query: 6   LISQLMHIPVLDPHTKALSRLTIQTLELILSLLLLKVIGN---------TDSETCLEIMS 65
           L+SQLMH+P+LDP TKALSRL IQTLE IL+LLLLK+             D+E C     
Sbjct: 110 LVSQLMHMPILDPQTKALSRLAIQTLEFILTLLLLKLTAKPNYRFRNFFRDNELC----- 169

Query: 66  YAAKGIGFFASTLGVGFLFSNSFPYSTSCRKSDWAKGCKQLCAEGDYILDSSNISRVAYF 117
             +K    FAS  GVGFL S  F  S    +    K    L  +   ILD SNISR A F
Sbjct: 170 --SKRNWIFASAFGVGFLLSLVFLTSLLAERVIGPKAVSNLVLK--EILDCSNISRTACF 220

[Close]

BLAST of Cla97C07G131350 vs. TrEMBL
Match: tr|A0A0A0K4Q9|A0A0A0K4Q9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G291730 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 7.1e-11
Identity = 56/120 (46.67%), Postives = 64/120 (53.33%), Query Frame = 0


Query: 6   LISQLMHIPVLDPHTKALSRLTIQTLELILSLLLLKVIGN---------TDSETCLEIMS 65
           L+S+LMH+P+LDP TKALSRL IQTLE IL+LLLLK+             D+E C     
Sbjct: 99  LVSKLMHVPILDPQTKALSRLAIQTLEFILTLLLLKLTAKPNYRFRYFFRDNELC----- 158

Query: 66  YAAKGIGFFASTLGVGFLFSNSFPYSTSCRKSDWAKGCKQLCAEGDYILDSSNISRVAYF 117
              K    FAS  GVGFLFS  F  S         K    L  +   ILD SNISR A F
Sbjct: 159 --NKRNWIFASAFGVGFLFSLVFLTSLLAESVIGPKAVSNLVLK--EILDCSNISRTACF 209

The following BLAST results are available for this feature:

BLAST of Cla97C07G131350 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008461908.1	8.2e-11	46.67	PREDICTED: uncharacterized protein LOC103500400 isoform X1 [Cucumis melo]	[more]
XP_004139689.1	1.1e-10	46.67	PREDICTED: uncharacterized protein LOC101217192 isoform X1 [Cucumis sativus] >KG...	[more]
XP_022147858.1	5.0e-08	43.75	uncharacterized protein LOC111016695 [Momordica charantia]	[more]
XP_022952646.1	5.0e-08	46.43	uncharacterized protein LOC111455277 [Cucurbita moschata]	[more]
XP_023554557.1	5.0e-08	46.43	uncharacterized protein LOC111811763 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Cla97C07G131350 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CFT6\|A0A1S3CFT6_CUCME	5.4e-11	46.67	uncharacterized protein LOC103500400 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0K4Q9\|A0A0A0K4Q9_CUCSA	7.1e-11	46.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G291730 PE=4 SV=1	[more]

BLAST of Cla97C07G131350 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C07G131350 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C07G131350.1	Cla97C07G131350.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C07G131350	Watermelon (97103) v2	wmbwmbB105
Cla97C07G131350	Silver-seed gourd	carwmbB0754
Cla97C07G131350	Cucumber (Gy14) v2	cgybwmbB524
Cla97C07G131350	Cucumber (Gy14) v1	cgywmbB252
Cla97C07G131350	Cucurbita maxima (Rimu)	cmawmbB145
Cla97C07G131350	Cucurbita moschata (Rifu)	cmowmbB127
Cla97C07G131350	Cucurbita moschata (Rifu)	cmowmbB522
Cla97C07G131350	Wild cucumber (PI 183967)	cpiwmbB577
Cla97C07G131350	Cucumber (Chinese Long) v3	cucwmbB574
Cla97C07G131350	Cucumber (Chinese Long) v2	cuwmbB551
Cla97C07G131350	Bottle gourd (USVL1VR-Ls)	lsiwmbB101
Cla97C07G131350	Melon (DHL92) v3.6.1	medwmbB186
Cla97C07G131350	Melon (DHL92) v3.5.1	mewmbB201
Cla97C07G131350	Watermelon (Charleston Gray)	wcgwmbB163
Cla97C07G131350	Watermelon (Charleston Gray)	wcgwmbB307
Cla97C07G131350	Watermelon (97103) v1	wmwmbB169
Cla97C07G131350	Watermelon (97103) v1	wmwmbB347
Cla97C07G131350	Wax gourd	wgowmbB262