Cla97C06G119150 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C06G119150
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Ribosomal protein S10
Location	Cla97Chr06 : 15214982 .. 15215335 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGGGTACCGCATTGGGCAAAAGACGATCCAAAAAGCGAAGGCTCACCCAAAAAGAAGGAAGGATCTTTGGCATAAAGATACCTTCTTATTAGAGAAAAGGGCAACCTATCTTACTAATAAGAAAAAAGGGGGTGAGATAGGCGACAGGTAGCTTGCTTCCAAGCCGGCCCGGCCGCGAGGAAGAAAGAGATCTTTGCCGGTGCTGACTTGGATCTCGGGTGACGGAATAAGGCGGCCAGAAGCGACGAGCAGTCGCGGTCGAAGCTTGGCTGACGCCGATAGGCTAGCAGTAAGCTTGGCTAAAGCGAAGCGCTTACCAAGCGCGAAGGAAAGGGCCTTCGCCACTTGA

mRNA sequence

ATGGGAGGGTACCGCATTGGGCAAAAGACGATCCAAAAAGCGAAGGCTCACCCAAAAAGAAGGAAGGATCTTTGGCATAAAGATACCTTCTTATTAGAGAAAAGGGCAACCTATCTTACTAATAAGAAAAAAGGGGGTGAGATAGGCGACAGGCGGCCAGAAGCGACGAGCAGTCGCGGTCGAAGCTTGGCTGACGCCGATAGGCTAGCAGTAAGCTTGGCTAAAGCGAAGCGCTTACCAAGCGCGAAGGAAAGGGCCTTCGCCACTTGA

Coding sequence (CDS)

ATGGGAGGGTACCGCATTGGGCAAAAGACGATCCAAAAAGCGAAGGCTCACCCAAAAAGAAGGAAGGATCTTTGGCATAAAGATACCTTCTTATTAGAGAAAAGGGCAACCTATCTTACTAATAAGAAAAAAGGGGGTGAGATAGGCGACAGGCGGCCAGAAGCGACGAGCAGTCGCGGTCGAAGCTTGGCTGACGCCGATAGGCTAGCAGTAAGCTTGGCTAAAGCGAAGCGCTTACCAAGCGCGAAGGAAAGGGCCTTCGCCACTTGA

Protein sequence

MGGYRIGQKTIQKAKAHPKRRKDLWHKDTFLLEKRATYLTNKKKGGEIGDRRPEATSSRGRSLADADRLAVSLAKAKRLPSAKERAFAT

Homology

[Close]

BLAST of Cla97C06G119150 vs. NCBI nr
Match: EEF27319.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 69.7 bits (169), Expect = 5.7e-09
Identity = 48/79 (60.76%), Postives = 53/79 (67.09%), Query Frame = 0


Query: 11 IQKAKAHPKRRKDLWHKDTFLLEKRATYLTNKKKGGEIGDRRPEATSSRGRSLADADRLA 70
          IQKAKAHP + K+              YL  +++G      RPEATSSRGRSLA ADRLA
Sbjct: 2  IQKAKAHPTQLKE---------GALEAYLIIRERG------RPEATSSRGRSLALADRLA 61

Query: 71 VSLAKAKRLPSAKERAFAT 90
          VSLA AKRLPSAKERAFAT
Sbjct: 62 VSLATAKRLPSAKERAFAT 65

[Close]

BLAST of Cla97C06G119150 vs. NCBI nr
Match: KJB09760.1 (hypothetical protein B456_001G162600 [Gossypium raimondii])

HSP 1 Score: 63.2 bits (152), Expect = 5.3e-07
Identity = 47/81 (58.02%), Postives = 47/81 (58.02%), Query Frame = 0


Query: 2  GGYRIGQKTIQKAKAHPKRRKDLWHKDTFLLEKRATYLTNKKKGG------------EIG 61
          GGYRIGQKTIQKAK     RK           K ATYLTN KKGG              G
Sbjct: 17 GGYRIGQKTIQKAK-----RK----------RKGATYLTNNKKGGIKRSLPVLTWISGDG 76

Query: 62 DRRPEATSSRGRSLADADRLA 71
           RRPEATSSRGRSLA ADRLA
Sbjct: 77 IRRPEATSSRGRSLALADRLA 82

[Close]

BLAST of Cla97C06G119150 vs. TrEMBL
Match: tr|B9T9Y9|B9T9Y9_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_2118730 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.7e-09
Identity = 48/79 (60.76%), Postives = 53/79 (67.09%), Query Frame = 0


Query: 11 IQKAKAHPKRRKDLWHKDTFLLEKRATYLTNKKKGGEIGDRRPEATSSRGRSLADADRLA 70
          IQKAKAHP + K+              YL  +++G      RPEATSSRGRSLA ADRLA
Sbjct: 2  IQKAKAHPTQLKE---------GALEAYLIIRERG------RPEATSSRGRSLALADRLA 61

Query: 71 VSLAKAKRLPSAKERAFAT 90
          VSLA AKRLPSAKERAFAT
Sbjct: 62 VSLATAKRLPSAKERAFAT 65

[Close]

BLAST of Cla97C06G119150 vs. TrEMBL
Match: tr|A0A0D2QRA4|A0A0D2QRA4_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_001G162600 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.5e-07
Identity = 47/81 (58.02%), Postives = 47/81 (58.02%), Query Frame = 0


Query: 2  GGYRIGQKTIQKAKAHPKRRKDLWHKDTFLLEKRATYLTNKKKGG------------EIG 61
          GGYRIGQKTIQKAK     RK           K ATYLTN KKGG              G
Sbjct: 17 GGYRIGQKTIQKAK-----RK----------RKGATYLTNNKKGGIKRSLPVLTWISGDG 76

Query: 62 DRRPEATSSRGRSLADADRLA 71
           RRPEATSSRGRSLA ADRLA
Sbjct: 77 IRRPEATSSRGRSLALADRLA 82

The following BLAST results are available for this feature:

BLAST of Cla97C06G119150 vs. NCBI nr


Match Name	E-value	Identity	Description
EEF27319.1	5.7e-09	60.76	conserved hypothetical protein [Ricinus communis]	[more]
KJB09760.1	5.3e-07	58.02	hypothetical protein B456_001G162600 [Gossypium raimondii]	[more]

BLAST of Cla97C06G119150 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|B9T9Y9\|B9T9Y9_RICCO	3.7e-09	60.76	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_2118730 PE=4 SV=1	[more]
tr\|A0A0D2QRA4\|A0A0D2QRA4_GOSRA	3.5e-07	58.02	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_001G162600 PE=4 ...	[more]

BLAST of Cla97C06G119150 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C06G119150 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005840	ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C06G119150.1	Cla97C06G119150.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..63
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..58

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C06G119150	Silver-seed gourd	carwmbB0958
Cla97C06G119150	Cucumber (Gy14) v2	cgybwmbB079
Cla97C06G119150	Cucumber (Gy14) v1	cgywmbB508
Cla97C06G119150	Cucurbita maxima (Rimu)	cmawmbB142
Cla97C06G119150	Cucurbita moschata (Rifu)	cmowmbB125
Cla97C06G119150	Wild cucumber (PI 183967)	cpiwmbB083
Cla97C06G119150	Cucumber (Chinese Long) v3	cucwmbB079
Cla97C06G119150	Cucumber (Chinese Long) v2	cuwmbB082
Cla97C06G119150	Bottle gourd (USVL1VR-Ls)	lsiwmbB027
Cla97C06G119150	Bottle gourd (USVL1VR-Ls)	lsiwmbB378
Cla97C06G119150	Melon (DHL92) v3.6.1	medwmbB252
Cla97C06G119150	Melon (DHL92) v3.5.1	mewmbB266
Cla97C06G119150	Watermelon (Charleston Gray)	wcgwmbB273
Cla97C06G119150	Watermelon (97103) v1	wmwmbB406