Cla97C06G118830 (gene) Watermelon (97103) v2

Overview
NameCla97C06G118830
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionPentatricopeptide repeat-containing protein
LocationCla97Chr06 : 13274522 .. 13274830 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCAATCTCTTAGGACGTTTGGGCCGCATCGATCAAGCAGTTAATCTAATAAAAAGTATGCCCCATGAACCAGATTTCCTGATGTGGTCCACATTTCTATCTGTTACTGCAACAAAGATAGATTTTGCAAATACAGAAATGGCAGCTAGGCATCTCTTTGAATTGGATCCTAGGTATGCTGTTCCATATGTTATGCTCTCAAATATGTATGCCTCTGTTGGTACATGGAAGGATGTAGCATCAGTTAGGACTCTCGTGAAGACAGAGCAAGAATGTCGAGAAGTTTACTGGGTACAGTTGGATTGA

mRNA sequence

ATGATCAATCTCTTAGGACGTTTGGGCCGCATCGATCAAGCAGTTAATCTAATAAAAAGTATGCCCCATGAACCAGATTTCCTGATGTGGTCCACATTTCTATCTGTTACTGCAACAAAGATAGATTTTGCAAATACAGAAATGGCAGCTAGGCATCTCTTTGAATTGGATCCTAGGTATGCTGTTCCATATGTTATGCTCTCAAATATGTATGCCTCTGTTGGTACATGGAAGGATGTAGCATCAGTTAGGACTCTCGTGAAGACAGAGCAAGAATGTCGAGAAGTTTACTGGGTACAGTTGGATTGA

Coding sequence (CDS)

ATGATCAATCTCTTAGGACGTTTGGGCCGCATCGATCAAGCAGTTAATCTAATAAAAAGTATGCCCCATGAACCAGATTTCCTGATGTGGTCCACATTTCTATCTGTTACTGCAACAAAGATAGATTTTGCAAATACAGAAATGGCAGCTAGGCATCTCTTTGAATTGGATCCTAGGTATGCTGTTCCATATGTTATGCTCTCAAATATGTATGCCTCTGTTGGTACATGGAAGGATGTAGCATCAGTTAGGACTCTCGTGAAGACAGAGCAAGAATGTCGAGAAGTTTACTGGGTACAGTTGGATTGA

Protein sequence

MINLLGRLGRIDQAVNLIKSMPHEPDFLMWSTFLSVTATKIDFANTEMAARHLFELDPRYAVPYVMLSNMYASVGTWKDVASVRTLVKTEQECREVYWVQLD
Homology
[Close]
BLAST of Cla97C06G118830 vs. NCBI nr
Match: XP_022145099.1 (pentatricopeptide repeat-containing protein At4g02750-like [Momordica charantia] >XP_022145100.1 pentatricopeptide repeat-containing protein At4g02750-like [Momordica charantia])

HSP 1 Score: 147.9 bits (372), Expect = 1.9e-32
Identity = 73/104 (70.19%), Postives = 87/104 (83.65%), Query Frame = 0 

Query: 1   MINLLGRLGRIDQAVNLIKSMPHEPDFLMWSTFLSVTATKIDFANTEMAARHLFELDPRY 60
           M+NLLGRLGRIDQAV+LIKSMPHEPD L+WST LSV+A K D AN EMAAR+LFELDP  
Sbjct: 465 MVNLLGRLGRIDQAVDLIKSMPHEPDCLIWSTLLSVSAVKGDIANAEMAARYLFELDPLN 524

Query: 61  AVPYVMLSNMYASVGTWKDVASVRTLVKTE--QECREVYWVQLD 103
           AVPYVMLSNMYA +G WKDVASVRTL+K++  ++     W+++D
Sbjct: 525 AVPYVMLSNMYACMGRWKDVASVRTLMKSKNVKKFAGYSWIEID 568

[Close]
BLAST of Cla97C06G118830 vs. NCBI nr
Match: XP_023516538.1 (pentatricopeptide repeat-containing protein At4g02750-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 147.1 bits (370), Expect = 3.2e-32
Identity = 70/104 (67.31%), Postives = 86/104 (82.69%), Query Frame = 0 

Query: 1   MINLLGRLGRIDQAVNLIKSMPHEPDFLMWSTFLSVTATKIDFANTEMAARHLFELDPRY 60
           M+NLLGR GRIDQAVNLIK+MPHEPDFL+WST LSV+ATK D A  EMA RHLFELDP  
Sbjct: 465 MVNLLGRSGRIDQAVNLIKNMPHEPDFLIWSTLLSVSATKGDVARAEMAGRHLFELDPTN 524

Query: 61  AVPYVMLSNMYASVGTWKDVASVRTLVKTE--QECREVYWVQLD 103
           AVPY+MLSNMYAS+G WKDVA+VR+++K +  ++     W+++D
Sbjct: 525 AVPYIMLSNMYASMGRWKDVAAVRSVMKNKNVKKFAGYSWIEID 568

[Close]
BLAST of Cla97C06G118830 vs. NCBI nr
Match: XP_022960689.1 (pentatricopeptide repeat-containing protein At4g02750-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 145.2 bits (365), Expect = 1.2e-31
Identity = 69/104 (66.35%), Postives = 86/104 (82.69%), Query Frame = 0 

Query: 1   MINLLGRLGRIDQAVNLIKSMPHEPDFLMWSTFLSVTATKIDFANTEMAARHLFELDPRY 60
           M+NLLGR GRIDQAV+LIKSMPHEPDFL+WST LSV+ATK D A+ EM  RHLFELDP  
Sbjct: 465 MVNLLGRSGRIDQAVDLIKSMPHEPDFLIWSTLLSVSATKGDVASAEMGGRHLFELDPTN 524

Query: 61  AVPYVMLSNMYASVGTWKDVASVRTLVKTE--QECREVYWVQLD 103
           AVPY+MLSNMYAS+G WKDVA+VR+++K +  ++     W+++D
Sbjct: 525 AVPYIMLSNMYASMGRWKDVAAVRSVMKNKNVKKFAGYSWIEID 568

[Close]
BLAST of Cla97C06G118830 vs. NCBI nr
Match: XP_022987632.1 (pentatricopeptide repeat-containing protein At4g02750-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 145.2 bits (365), Expect = 1.2e-31
Identity = 70/104 (67.31%), Postives = 85/104 (81.73%), Query Frame = 0 

Query: 1   MINLLGRLGRIDQAVNLIKSMPHEPDFLMWSTFLSVTATKIDFANTEMAARHLFELDPRY 60
           M+NLLGR GRIDQAVNLIKSMPHEPDFL+WST LSV+ATK D A  EMA RHLFELD   
Sbjct: 465 MVNLLGRSGRIDQAVNLIKSMPHEPDFLIWSTLLSVSATKGDVARAEMAGRHLFELDSTN 524

Query: 61  AVPYVMLSNMYASVGTWKDVASVRTLVKTE--QECREVYWVQLD 103
           AVPY+MLSNMYAS+G WKDVA+VR+++K +  ++     W+++D
Sbjct: 525 AVPYIMLSNMYASMGRWKDVAAVRSVMKNKNVKKFAGYSWIEID 568

[Close]
BLAST of Cla97C06G118830 vs. NCBI nr
Match: XP_004147314.1 (PREDICTED: putative pentatricopeptide repeat-containing protein At1g68930 [Cucumis sativus] >KGN64799.1 hypothetical protein Csa_1G103260 [Cucumis sativus])

HSP 1 Score: 140.2 bits (352), Expect = 3.9e-30
Identity = 66/104 (63.46%), Postives = 84/104 (80.77%), Query Frame = 0 

Query: 1   MINLLGRLGRIDQAVNLIKSMPHEPDFLMWSTFLSVTATKIDFANTEMAARHLFELDPRY 60
           M+NLLGR GRI+QAV LIK+M H+PDFL+WST LS+ +TK D  N E+AARHLFELDP  
Sbjct: 465 MVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTI 524

Query: 61  AVPYVMLSNMYASVGTWKDVASVRTLVKTE--QECREVYWVQLD 103
           AVPY+MLSNMYAS+G WKDVASVR L+K++  ++     W+++D
Sbjct: 525 AVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKKFAGFSWIEID 568

[Close]
BLAST of Cla97C06G118830 vs. TrEMBL
Match: tr|A0A1S4E3A6|A0A1S4E3A6_CUCME (pentatricopeptide repeat-containing protein At4g02750-like OS=Cucumis melo OX=3656 GN=LOC103501362 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.6e-30
Identity = 67/104 (64.42%), Postives = 84/104 (80.77%), Query Frame = 0 

Query: 1   MINLLGRLGRIDQAVNLIKSMPHEPDFLMWSTFLSVTATKIDFANTEMAARHLFELDPRY 60
           M+NLLGR GRI+QAV+LIK+M HEPDFL+WST LS+ +TK D  N EMAARHLFELDP  
Sbjct: 98  MVNLLGRTGRIEQAVSLIKNMAHEPDFLIWSTLLSICSTKGDIVNAEMAARHLFELDPTS 157

Query: 61  AVPYVMLSNMYASVGTWKDVASVRTLVKTE--QECREVYWVQLD 103
           AVPY+MLSNMYAS+G WK VASVR L+K++  ++     W+++D
Sbjct: 158 AVPYIMLSNMYASMGRWKYVASVRNLMKSKNVKKFAGFSWIEID 201

[Close]
BLAST of Cla97C06G118830 vs. TrEMBL
Match: tr|A0A0A0LUY3|A0A0A0LUY3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G103260 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.6e-30
Identity = 66/104 (63.46%), Postives = 84/104 (80.77%), Query Frame = 0 

Query: 1   MINLLGRLGRIDQAVNLIKSMPHEPDFLMWSTFLSVTATKIDFANTEMAARHLFELDPRY 60
           M+NLLGR GRI+QAV LIK+M H+PDFL+WST LS+ +TK D  N E+AARHLFELDP  
Sbjct: 465 MVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTI 524

Query: 61  AVPYVMLSNMYASVGTWKDVASVRTLVKTE--QECREVYWVQLD 103
           AVPY+MLSNMYAS+G WKDVASVR L+K++  ++     W+++D
Sbjct: 525 AVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKKFAGFSWIEID 568

[Close]
BLAST of Cla97C06G118830 vs. TrEMBL
Match: tr|A0A2C9WK70|A0A2C9WK70_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_01G124700 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 8.6e-26
Identity = 61/104 (58.65%), Postives = 81/104 (77.88%), Query Frame = 0 

Query: 1   MINLLGRLGRIDQAVNLIKSMPHEPDFLMWSTFLSVTATKIDFANTEMAARHLFELDPRY 60
           MINLLGR G +++A++LI +MPHEP+ L+WST LSV+A K D  + E AARHLFELDP  
Sbjct: 466 MINLLGRSGCMNEAMDLINTMPHEPNSLIWSTVLSVSAMKGDIKHAEKAARHLFELDPLN 525

Query: 61  AVPYVMLSNMYASVGTWKDVASVRTLVKTE--QECREVYWVQLD 103
           A PY+MLSNMYAS G WKDVAS+R+L+KT+  ++     W+++D
Sbjct: 526 AGPYIMLSNMYASCGRWKDVASMRSLMKTKNVKKFAAYSWIEID 569

[Close]
BLAST of Cla97C06G118830 vs. TrEMBL
Match: tr|A0A2P5FW66|A0A2P5FW66_9ROSA (DYW domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_023160 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.3e-25
Identity = 59/104 (56.73%), Postives = 77/104 (74.04%), Query Frame = 0 

Query: 1   MINLLGRLGRIDQAVNLIKSMPHEPDFLMWSTFLSVTATKIDFANTEMAARHLFELDPRY 60
           MI L GR G ID+A++L+KSMPHEP+ L+WST LSV A K D  N EMAA HLF+LDP  
Sbjct: 465 MICLFGRSGNIDKALDLVKSMPHEPNSLIWSTLLSVCAMKNDIKNAEMAAEHLFKLDPFN 524

Query: 61  AVPYVMLSNMYASVGTWKDVASVRTL--VKTEQECREVYWVQLD 103
           A PY++LSNMYA+ G WKDVAS+R+L  +K  ++     W+++D
Sbjct: 525 AGPYIILSNMYATYGRWKDVASIRSLMKIKNVKKFSAYSWIEID 568

[Close]
BLAST of Cla97C06G118830 vs. TrEMBL
Match: tr|A0A2I4HSK7|A0A2I4HSK7_9ROSI (pentatricopeptide repeat-containing protein At3g62890-like OS=Juglans regia OX=51240 GN=LOC109021052 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.3e-25
Identity = 59/104 (56.73%), Postives = 80/104 (76.92%), Query Frame = 0 

Query: 1   MINLLGRLGRIDQAVNLIKSMPHEPDFLMWSTFLSVTATKIDFANTEMAARHLFELDPRY 60
           MINLLGR G I++AV+LI+ MPHEP+ L+WST LSV+A   D  + EMAA+HLFELDP  
Sbjct: 465 MINLLGRTGYINEAVDLIEGMPHEPNCLIWSTILSVSAISHDVKHAEMAAKHLFELDPLN 524

Query: 61  AVPYVMLSNMYASVGTWKDVASVRTLVKTE--QECREVYWVQLD 103
           A PY+MLSN+YA+ G WKDVAS+R+L+K +  ++     W+++D
Sbjct: 525 AGPYIMLSNLYATCGRWKDVASMRSLMKHKNIKKYAAYSWIEID 568

[Close]
BLAST of Cla97C06G118830 vs. Swiss-Prot
Match: sp|Q9FLZ9|PP405_ARATH (Pentatricopeptide repeat-containing protein At5g39350 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E16 PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 6.4e-16
Identity = 38/88 (43.18%), Postives = 59/88 (67.05%), Query Frame = 0 

Query: 1   MINLLGRLGRIDQAVNLIKSMPHEPDFLMWSTFLSVTATKIDFANTEMAARHLFELDPRY 60
           +++LLGR GR+D+A NLI ++P EP   +W   L+   T  +    EMAA  LFEL+P  
Sbjct: 567 IVDLLGRAGRLDEAYNLITTIPFEPTSTVWGALLAACVTHENVQLGEMAANKLFELEPEN 626

Query: 61  AVPYVMLSNMYASVGTWKDVASVRTLVK 89
              YV+L+N+YA++G WKD+  VR++++
Sbjct: 627 TGNYVLLANIYAALGRWKDMEKVRSMME 654

[Close]
BLAST of Cla97C06G118830 vs. Swiss-Prot
Match: sp|O22137|PP202_ARATH (Pentatricopeptide repeat-containing protein At2g45350, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CRR4 PE=1 SV=2)

HSP 1 Score: 84.3 bits (207), Expect = 8.3e-16
Identity = 44/105 (41.90%), Postives = 66/105 (62.86%), Query Frame = 0 

Query: 1   MINLLGRLGRIDQAVNLIKSMPHEPDFLMWSTFLSVTATKIDFANTEMAARHLFELDPRY 60
           M+++L R G I+ A NLI+ MP EP+ ++W TFL+  +   +F   E+ A+HL       
Sbjct: 493 MVDILSRSGSIELAKNLIEEMPVEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAGYN 552

Query: 61  AVPYVMLSNMYASVGTWKDVASVRTLVKTEQECREV---YWVQLD 103
              YV+LSNMYAS G WKDV  VRT++K E++  ++    W++LD
Sbjct: 553 PSSYVLLSNMYASFGMWKDVRRVRTMMK-ERKIEKIPGCSWIELD 596

[Close]
BLAST of Cla97C06G118830 vs. Swiss-Prot
Match: sp|P0C8Q8|PP394_ARATH (Pentatricopeptide repeat-containing protein At5g19020, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E42 PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.6e-14
Identity = 40/98 (40.82%), Postives = 59/98 (60.20%), Query Frame = 0 

Query: 1   MINLLGRLGRIDQAVNLIKSMPHEPDFLMWSTFLSVTATKIDFANTEMAARHLFELDPRY 60
           M++LLG+ GR+++A  +IK MP + D ++W   LS + T  +    E+AA  L  +DP +
Sbjct: 584 MVDLLGKAGRLEEAKEMIKKMPVKADVMIWGMLLSASRTHGNVEIAELAATELAAIDPSH 643

Query: 61  AVPYVMLSNMYASVGTWKDVASVRTLVKTEQECREVYW 99
               VMLSN+YA  G W+DVA    LV+ E   R+V W
Sbjct: 644 GGCKVMLSNVYADAGRWEDVA----LVREEMRTRDVEW 677

[Close]
BLAST of Cla97C06G118830 vs. Swiss-Prot
Match: sp|Q9LNU6|PPR53_ARATH (Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H21 PE=2 SV=2)

HSP 1 Score: 79.7 bits (195), Expect = 2.0e-14
Identity = 37/89 (41.57%), Postives = 56/89 (62.92%), Query Frame = 0 

Query: 1   MINLLGRLGRIDQAVNLIKSMPHEPDFLMWSTFLSVTATKIDFANTEMAARHLFELDPRY 60
           M+NLLGR G++ +A +LIK MP EPD  +W   L+    + +    E+AA  LF L+P  
Sbjct: 531 MVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPEN 590

Query: 61  AVPYVMLSNMYASVGTWKDVASVRTLVKT 90
              YV+LSN+YA+ G W +V S+R  +++
Sbjct: 591 PGTYVLLSNIYAAKGMWTEVDSIRNKMES 619

[Close]
BLAST of Cla97C06G118830 vs. Swiss-Prot
Match: sp|Q9FFG8|PP417_ARATH (Pentatricopeptide repeat-containing protein At5g44230 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H17 PE=2 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.6e-14
Identity = 42/101 (41.58%), Postives = 59/101 (58.42%), Query Frame = 0 

Query: 1   MINLLGRLGRIDQAVNLIKSMPHEPDFLMWSTFLSVTATKIDFANTEMAARHLFELDPRY 60
           M++LLGR GR+ +A+ LIK+M  EP   +W   L       +    E+AA HLFEL+P  
Sbjct: 427 MVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAEIAAEHLFELEPDI 486

Query: 61  AVPYVMLSNMYASVGTWKDVASVRTLVKTE--QECREVYWV 100
              Y++LSN+YAS G W  V  VR L+K +  ++   V WV
Sbjct: 487 IGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWV 527

[Close]
BLAST of Cla97C06G118830 vs. TAIR10
Match: AT5G39350.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 84.7 bits (208), Expect = 3.5e-17
Identity = 38/88 (43.18%), Postives = 59/88 (67.05%), Query Frame = 0 

Query: 1   MINLLGRLGRIDQAVNLIKSMPHEPDFLMWSTFLSVTATKIDFANTEMAARHLFELDPRY 60
           +++LLGR GR+D+A NLI ++P EP   +W   L+   T  +    EMAA  LFEL+P  
Sbjct: 567 IVDLLGRAGRLDEAYNLITTIPFEPTSTVWGALLAACVTHENVQLGEMAANKLFELEPEN 626

Query: 61  AVPYVMLSNMYASVGTWKDVASVRTLVK 89
              YV+L+N+YA++G WKD+  VR++++
Sbjct: 627 TGNYVLLANIYAALGRWKDMEKVRSMME 654

[Close]
BLAST of Cla97C06G118830 vs. TAIR10
Match: AT2G45350.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 84.3 bits (207), Expect = 4.6e-17
Identity = 44/105 (41.90%), Postives = 66/105 (62.86%), Query Frame = 0 

Query: 1   MINLLGRLGRIDQAVNLIKSMPHEPDFLMWSTFLSVTATKIDFANTEMAARHLFELDPRY 60
           M+++L R G I+ A NLI+ MP EP+ ++W TFL+  +   +F   E+ A+HL       
Sbjct: 493 MVDILSRSGSIELAKNLIEEMPVEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAGYN 552

Query: 61  AVPYVMLSNMYASVGTWKDVASVRTLVKTEQECREV---YWVQLD 103
              YV+LSNMYAS G WKDV  VRT++K E++  ++    W++LD
Sbjct: 553 PSSYVLLSNMYASFGMWKDVRRVRTMMK-ERKIEKIPGCSWIELD 596

[Close]
BLAST of Cla97C06G118830 vs. TAIR10
Match: AT5G19020.1 (mitochondrial editing factor 18)

HSP 1 Score: 80.1 bits (196), Expect = 8.7e-16
Identity = 40/98 (40.82%), Postives = 59/98 (60.20%), Query Frame = 0 

Query: 1   MINLLGRLGRIDQAVNLIKSMPHEPDFLMWSTFLSVTATKIDFANTEMAARHLFELDPRY 60
           M++LLG+ GR+++A  +IK MP + D ++W   LS + T  +    E+AA  L  +DP +
Sbjct: 584 MVDLLGKAGRLEEAKEMIKKMPVKADVMIWGMLLSASRTHGNVEIAELAATELAAIDPSH 643

Query: 61  AVPYVMLSNMYASVGTWKDVASVRTLVKTEQECREVYW 99
               VMLSN+YA  G W+DVA    LV+ E   R+V W
Sbjct: 644 GGCKVMLSNVYADAGRWEDVA----LVREEMRTRDVEW 677

[Close]
BLAST of Cla97C06G118830 vs. TAIR10
Match: AT1G20230.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 79.7 bits (195), Expect = 1.1e-15
Identity = 37/89 (41.57%), Postives = 56/89 (62.92%), Query Frame = 0 

Query: 1   MINLLGRLGRIDQAVNLIKSMPHEPDFLMWSTFLSVTATKIDFANTEMAARHLFELDPRY 60
           M+NLLGR G++ +A +LIK MP EPD  +W   L+    + +    E+AA  LF L+P  
Sbjct: 531 MVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPEN 590

Query: 61  AVPYVMLSNMYASVGTWKDVASVRTLVKT 90
              YV+LSN+YA+ G W +V S+R  +++
Sbjct: 591 PGTYVLLSNIYAAKGMWTEVDSIRNKMES 619

[Close]
BLAST of Cla97C06G118830 vs. TAIR10
Match: AT5G44230.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 78.6 bits (192), Expect = 2.5e-15
Identity = 42/101 (41.58%), Postives = 59/101 (58.42%), Query Frame = 0 

Query: 1   MINLLGRLGRIDQAVNLIKSMPHEPDFLMWSTFLSVTATKIDFANTEMAARHLFELDPRY 60
           M++LLGR GR+ +A+ LIK+M  EP   +W   L       +    E+AA HLFEL+P  
Sbjct: 427 MVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAEIAAEHLFELEPDI 486

Query: 61  AVPYVMLSNMYASVGTWKDVASVRTLVKTE--QECREVYWV 100
              Y++LSN+YAS G W  V  VR L+K +  ++   V WV
Sbjct: 487 IGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWV 527

The following BLAST results are available for this feature:
BLAST of Cla97C06G118830 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022145099.11.9e-3270.19pentatricopeptide repeat-containing protein At4g02750-like [Momordica charantia]... [more]
XP_023516538.13.2e-3267.31pentatricopeptide repeat-containing protein At4g02750-like [Cucurbita pepo subsp... [more]
XP_022960689.11.2e-3166.35pentatricopeptide repeat-containing protein At4g02750-like isoform X1 [Cucurbita... [more]
XP_022987632.11.2e-3167.31pentatricopeptide repeat-containing protein At4g02750-like isoform X1 [Cucurbita... [more]
XP_004147314.13.9e-3063.46PREDICTED: putative pentatricopeptide repeat-containing protein At1g68930 [Cucum... [more]
BLAST of Cla97C06G118830 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4E3A6|A0A1S4E3A6_CUCME2.6e-3064.42pentatricopeptide repeat-containing protein At4g02750-like OS=Cucumis melo OX=36... [more]
tr|A0A0A0LUY3|A0A0A0LUY3_CUCSA2.6e-3063.46Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G103260 PE=4 SV=1[more]
tr|A0A2C9WK70|A0A2C9WK70_MANES8.6e-2658.65Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_01G124700 PE=4 SV=... [more]
tr|A0A2P5FW66|A0A2P5FW66_9ROSA4.3e-2556.73DYW domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_023160 ... [more]
tr|A0A2I4HSK7|A0A2I4HSK7_9ROSI4.3e-2556.73pentatricopeptide repeat-containing protein At3g62890-like OS=Juglans regia OX=5... [more]
BLAST of Cla97C06G118830 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9FLZ9|PP405_ARATH6.4e-1643.18Pentatricopeptide repeat-containing protein At5g39350 OS=Arabidopsis thaliana OX... [more]
sp|O22137|PP202_ARATH8.3e-1641.90Pentatricopeptide repeat-containing protein At2g45350, chloroplastic OS=Arabidop... [more]
sp|P0C8Q8|PP394_ARATH1.6e-1440.82Pentatricopeptide repeat-containing protein At5g19020, mitochondrial OS=Arabidop... [more]
sp|Q9LNU6|PPR53_ARATH2.0e-1441.57Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana OX... [more]
sp|Q9FFG8|PP417_ARATH4.6e-1441.58Pentatricopeptide repeat-containing protein At5g44230 OS=Arabidopsis thaliana OX... [more]
BLAST of Cla97C06G118830 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G39350.13.5e-1743.18Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT2G45350.14.6e-1741.90Pentatricopeptide repeat (PPR) superfamily protein[more]
AT5G19020.18.7e-1640.82mitochondrial editing factor 18[more]
AT1G20230.11.1e-1541.57Pentatricopeptide repeat (PPR) superfamily protein[more]
AT5G44230.12.5e-1541.58Pentatricopeptide repeat (PPR) superfamily protein[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051013 microtubule severing
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0008568 microtubule-severing ATPase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C06G118830.1Cla97C06G118830.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR24015:SF452SUBFAMILY NOT NAMEDcoord: 1..90
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 1..90

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C06G118830ClCG06G009020Watermelon (Charleston Gray)wcgwmbB273
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C06G118830Silver-seed gourdcarwmbB0034
Cla97C06G118830Cucumber (Gy14) v2cgybwmbB079
Cla97C06G118830Cucumber (Gy14) v1cgywmbB576
Cla97C06G118830Cucurbita maxima (Rimu)cmawmbB079
Cla97C06G118830Cucurbita maxima (Rimu)cmawmbB132
Cla97C06G118830Cucurbita moschata (Rifu)cmowmbB068
Cla97C06G118830Cucurbita moschata (Rifu)cmowmbB117
Cla97C06G118830Wild cucumber (PI 183967)cpiwmbB083
Cla97C06G118830Cucumber (Chinese Long) v3cucwmbB079
Cla97C06G118830Cucumber (Chinese Long) v2cuwmbB082
Cla97C06G118830Bottle gourd (USVL1VR-Ls)lsiwmbB378
Cla97C06G118830Melon (DHL92) v3.5.1mewmbB262
Cla97C06G118830Melon (DHL92) v3.5.1mewmbB266
Cla97C06G118830Watermelon (97103) v1wmwmbB406
Cla97C06G118830Wax gourdwgowmbB651