Cla97C06G118620 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C06G118620
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Reverse transcriptase
Location	Cla97Chr06 : 12775852 .. 12776310 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACCCCACTGCGCATGGATTATTGACTACTTGGATAGTTTTGGTAAGATTCCAAATGATCCTTCCAGTTCTCAGCTTGCTTTCCACGTAGAGTATGATCTATTGGATAACAATCTTAAAATTATTCATTGTGATGCTGCTTTTAAGCCTAGTGAGCACATTGTTGGAATTGGTGGAGTTGTTGGATCGTCTTTTGGGCAGCTTCTAGCCTCTTTGTGTGAGTTTAGAACCTTTTCTGGCAACATGCTATGTGTTGAAGCTTTTACTGTTCTTGAGGGGTTTTGTTTGGCTGAAAGAATGGGTCTTTCTCATTTGTTAATTCTGTCTGATTCGTTAATGTTGATTCAGATTCTTATGGGCCTTTATGCCTCTCAGGTTGGCATGGCTAATTTTTTTGCTGATATTAAACAGCTTATAGCCTGTTTTGTTTCTGTTTCCTTTCAACATGTGCCTTGA

mRNA sequence

ATGAAACCCCACTGCGCATGGATTATTGACTACTTGGATAGTTTTGGTAAGATTCCAAATGATCCTTCCAGTTCTCAGCTTGCTTTCCACGTAGAGTATGATCTATTGGATAACAATCTTAAAATTATTCATTGTGATGCTGCTTTTAAGCCTAGTGAGCACATTGTTGGAATTGGTGGAGTTGTTGGATCGTCTTTTGGGCAGCTTCTAGCCTCTTTGTGTGAGTTTAGAACCTTTTCTGGCAACATGCTATGTGTTGAAGCTTTTACTGTTCTTGAGGGGTTTTGTTTGGCTGAAAGAATGGGTCTTTCTCATTTGTTAATTCTGTCTGATTCGTTAATGTTGATTCAGATTCTTATGGGCCTTTATGCCTCTCAGGTTGGCATGGCTAATTTTTTTGCTGATATTAAACAGCTTATAGCCTGTTTTGTTTCTGTTTCCTTTCAACATGTGCCTTGA

Coding sequence (CDS)

ATGAAACCCCACTGCGCATGGATTATTGACTACTTGGATAGTTTTGGTAAGATTCCAAATGATCCTTCCAGTTCTCAGCTTGCTTTCCACGTAGAGTATGATCTATTGGATAACAATCTTAAAATTATTCATTGTGATGCTGCTTTTAAGCCTAGTGAGCACATTGTTGGAATTGGTGGAGTTGTTGGATCGTCTTTTGGGCAGCTTCTAGCCTCTTTGTGTGAGTTTAGAACCTTTTCTGGCAACATGCTATGTGTTGAAGCTTTTACTGTTCTTGAGGGGTTTTGTTTGGCTGAAAGAATGGGTCTTTCTCATTTGTTAATTCTGTCTGATTCGTTAATGTTGATTCAGATTCTTATGGGCCTTTATGCCTCTCAGGTTGGCATGGCTAATTTTTTTGCTGATATTAAACAGCTTATAGCCTGTTTTGTTTCTGTTTCCTTTCAACATGTGCCTTGA

Protein sequence

MKPHCAWIIDYLDSFGKIPNDPSSSQLAFHVEYDLLDNNLKIIHCDAAFKPSEHIVGIGGVVGSSFGQLLASLCEFRTFSGNMLCVEAFTVLEGFCLAERMGLSHLLILSDSLMLIQILMGLYASQVGMANFFADIKQLIACFVSVSFQHVP

Homology

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BLAST of Cla97C06G118620 vs. NCBI nr
Match: POE96822.1 (hypothetical protein CFP56_48987 [Quercus suber])

HSP 1 Score: 54.7 bits (130), Expect = 3.2e-04
Identity = 33/106 (31.13%), Postives = 49/106 (46.23%), Query Frame = 0


Query: 46  DAAFKPSEHIVGIGGVVGSSFGQLLASLCEFRTFSGNMLCVEAFTVLEGFCLAERMGLSH 105
           D A+   E   GIG VV +  GQ++ASL E      ++  +EA          E +GL  
Sbjct: 670 DGAYFEEEEAAGIGVVVRNEMGQVMASLAEKIIMPSSVEILEAIAARRAMIFMEELGLRR 729

Query: 106 LLILSDSLMLIQILMGLYASQVGMANFFADIKQLIACFVSVSFQHV 152
            +   DS  +++ L G    +  + +   D K L+ CF S SF HV
Sbjct: 730 AIFEGDSETVVKALSGDCPDRSSIGHIVKDCKSLMGCFQSCSFSHV 775

[Close]

BLAST of Cla97C06G118620 vs. NCBI nr
Match: POF06673.1 (hypothetical protein CFP56_29261 [Quercus suber])

HSP 1 Score: 54.7 bits (130), Expect = 3.2e-04
Identity = 33/106 (31.13%), Postives = 49/106 (46.23%), Query Frame = 0


Query: 46  DAAFKPSEHIVGIGGVVGSSFGQLLASLCEFRTFSGNMLCVEAFTVLEGFCLAERMGLSH 105
           D A+   E   GIG VV +  GQ++ASL E      ++  +EA          E +GL  
Sbjct: 260 DGAYFEEEEAAGIGVVVRNEMGQVMASLAEKIIMPSSVEILEAIAARRAMIFMEELGLRR 319

Query: 106 LLILSDSLMLIQILMGLYASQVGMANFFADIKQLIACFVSVSFQHV 152
            +   DS  +++ L G    +  + +   D K L+ CF S SF HV
Sbjct: 320 AIFEGDSETVVKALSGDCPDRSSIGHIVKDCKSLMGCFQSCSFSHV 365

[Close]

BLAST of Cla97C06G118620 vs. NCBI nr
Match: XP_018821989.1 (PREDICTED: uncharacterized protein LOC108992010 [Juglans regia])

HSP 1 Score: 53.5 bits (127), Expect = 7.2e-04
Identity = 32/109 (29.36%), Postives = 54/109 (49.54%), Query Frame = 0


Query: 43  IHCDAAFKPSEHIVGIGGVVGSSFGQLLASLCEFRTFSGNMLCVEAFTVLEGFCLAERMG 102
           ++ D AF     + GIG V+  S G++L +       S N+  +E   +L G  L   +G
Sbjct: 624 LNVDGAFSQDGSVTGIGAVLRDSKGEVLMAAAIRERASLNVYELEGLAILRGLQLCLHLG 683

Query: 103 LSHLLILSDSLMLIQILMGLYASQVGMANFFADIKQLIACFVSVSFQHV 152
           + HL I SDSL+++        S   M N  +++++L+ CF +    HV
Sbjct: 684 IYHLSIESDSLLVVNEFDRNGQSMATMGNVISEVRKLMFCFQTCELTHV 732

[Close]

BLAST of Cla97C06G118620 vs. TrEMBL
Match: tr|A0A0A9VCQ3|A0A0A9VCQ3_ARUDO (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.6e-04
Identity = 32/115 (27.83%), Postives = 59/115 (51.30%), Query Frame = 0


Query: 37  DNNLKIIHCDAAFKPSEHIVGIGGVVGSSFGQLLASLCEFRTFSGNMLCVEAFTVLEGFC 96
           +N +  ++ DAAF P       G V+  S+G    +   + +   ++L  EA  V +G  
Sbjct: 210 ENGIMKVNTDAAFYPDNMNGSSGVVIRDSYGNFKQAAAHWYSNLADVLTAEALAVRDGLI 269

Query: 97  LAERMGLSHLLILSDSLMLIQILMGLYASQVGMANFFADIKQLIACFVSVSFQHV 152
           LA   G  H+ + SD+  +++++     +   +A+ + D+K+L   F+SVSF HV
Sbjct: 270 LAAEAGNRHVTVESDNSSVVKLMKTGEGALSSIASIWHDVKELSRKFISVSFNHV 324

[Close]

BLAST of Cla97C06G118620 vs. TrEMBL
Match: tr|A0A2P4LN13|A0A2P4LN13_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_29261 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.1e-04
Identity = 33/106 (31.13%), Postives = 49/106 (46.23%), Query Frame = 0


Query: 46  DAAFKPSEHIVGIGGVVGSSFGQLLASLCEFRTFSGNMLCVEAFTVLEGFCLAERMGLSH 105
           D A+   E   GIG VV +  GQ++ASL E      ++  +EA          E +GL  
Sbjct: 260 DGAYFEEEEAAGIGVVVRNEMGQVMASLAEKIIMPSSVEILEAIAARRAMIFMEELGLRR 319

Query: 106 LLILSDSLMLIQILMGLYASQVGMANFFADIKQLIACFVSVSFQHV 152
            +   DS  +++ L G    +  + +   D K L+ CF S SF HV
Sbjct: 320 AIFEGDSETVVKALSGDCPDRSSIGHIVKDCKSLMGCFQSCSFSHV 365

[Close]

BLAST of Cla97C06G118620 vs. TrEMBL
Match: tr|A0A2P4KV06|A0A2P4KV06_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_48987 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.1e-04
Identity = 33/106 (31.13%), Postives = 49/106 (46.23%), Query Frame = 0


Query: 46  DAAFKPSEHIVGIGGVVGSSFGQLLASLCEFRTFSGNMLCVEAFTVLEGFCLAERMGLSH 105
           D A+   E   GIG VV +  GQ++ASL E      ++  +EA          E +GL  
Sbjct: 670 DGAYFEEEEAAGIGVVVRNEMGQVMASLAEKIIMPSSVEILEAIAARRAMIFMEELGLRR 729

Query: 106 LLILSDSLMLIQILMGLYASQVGMANFFADIKQLIACFVSVSFQHV 152
            +   DS  +++ L G    +  + +   D K L+ CF S SF HV
Sbjct: 730 AIFEGDSETVVKALSGDCPDRSSIGHIVKDCKSLMGCFQSCSFSHV 775

[Close]

BLAST of Cla97C06G118620 vs. TrEMBL
Match: tr|A0A2I4ERH4|A0A2I4ERH4_9ROSI (uncharacterized protein LOC108992010 OS=Juglans regia OX=51240 GN=LOC108992010 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.7e-04
Identity = 32/109 (29.36%), Postives = 54/109 (49.54%), Query Frame = 0


Query: 43  IHCDAAFKPSEHIVGIGGVVGSSFGQLLASLCEFRTFSGNMLCVEAFTVLEGFCLAERMG 102
           ++ D AF     + GIG V+  S G++L +       S N+  +E   +L G  L   +G
Sbjct: 624 LNVDGAFSQDGSVTGIGAVLRDSKGEVLMAAAIRERASLNVYELEGLAILRGLQLCLHLG 683

Query: 103 LSHLLILSDSLMLIQILMGLYASQVGMANFFADIKQLIACFVSVSFQHV 152
           + HL I SDSL+++        S   M N  +++++L+ CF +    HV
Sbjct: 684 IYHLSIESDSLLVVNEFDRNGQSMATMGNVISEVRKLMFCFQTCELTHV 732

The following BLAST results are available for this feature:

BLAST of Cla97C06G118620 vs. NCBI nr


Match Name	E-value	Identity	Description
POE96822.1	3.2e-04	31.13	hypothetical protein CFP56_48987 [Quercus suber]	[more]
POF06673.1	3.2e-04	31.13	hypothetical protein CFP56_29261 [Quercus suber]	[more]
XP_018821989.1	7.2e-04	29.36	PREDICTED: uncharacterized protein LOC108992010 [Juglans regia]	[more]

BLAST of Cla97C06G118620 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A9VCQ3\|A0A0A9VCQ3_ARUDO	1.6e-04	27.83	Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1	[more]
tr\|A0A2P4LN13\|A0A2P4LN13_QUESU	2.1e-04	31.13	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_29261 PE=4 SV=1	[more]
tr\|A0A2P4KV06\|A0A2P4KV06_QUESU	2.1e-04	31.13	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_48987 PE=4 SV=1	[more]
tr\|A0A2I4ERH4\|A0A2I4ERH4_9ROSI	4.7e-04	29.36	uncharacterized protein LOC108992010 OS=Juglans regia OX=51240 GN=LOC108992010 P...	[more]

BLAST of Cla97C06G118620 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C06G118620 vs. TAIR10


Match Name	E-value	Identity	Description

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR012337	RNaseH-like_sf
IPR036397	RNaseH_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C06G118620.1	Cla97C06G118620.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF13456	RVT_3	coord: 45..152 e-value: 9.5E-12 score: 44.7
IPR036397	Ribonuclease H superfamily	GENE3D	G3DSA:3.30.420.10		coord: 41..152 e-value: 6.6E-9 score: 37.9
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	SSF53098	Ribonuclease H-like	coord: 42..152

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C06G118620	Cla004100	Watermelon (97103) v1	wmwmbB406

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C06G118620	Cucumber (Chinese Long) v3	cucwmbB567
Cla97C06G118620	Watermelon (97103) v2	wmbwmbB164
Cla97C06G118620	Watermelon (97103) v2	wmbwmbB074
Cla97C06G118620	Silver-seed gourd	carwmbB0034
Cla97C06G118620	Silver-seed gourd	carwmbB0134
Cla97C06G118620	Silver-seed gourd	carwmbB0596
Cla97C06G118620	Silver-seed gourd	carwmbB0780
Cla97C06G118620	Silver-seed gourd	carwmbB0939
Cla97C06G118620	Silver-seed gourd	carwmbB1087
Cla97C06G118620	Cucumber (Gy14) v2	cgybwmbB079
Cla97C06G118620	Cucumber (Gy14) v2	cgybwmbB143
Cla97C06G118620	Cucumber (Gy14) v2	cgybwmbB517
Cla97C06G118620	Cucumber (Gy14) v1	cgywmbB169
Cla97C06G118620	Cucumber (Gy14) v1	cgywmbB576
Cla97C06G118620	Cucumber (Gy14) v1	cgywmbB615
Cla97C06G118620	Cucurbita maxima (Rimu)	cmawmbB079
Cla97C06G118620	Cucurbita maxima (Rimu)	cmawmbB132
Cla97C06G118620	Cucurbita maxima (Rimu)	cmawmbB187
Cla97C06G118620	Cucurbita maxima (Rimu)	cmawmbB379
Cla97C06G118620	Cucurbita maxima (Rimu)	cmawmbB824
Cla97C06G118620	Cucurbita moschata (Rifu)	cmowmbB068
Cla97C06G118620	Cucurbita moschata (Rifu)	cmowmbB117
Cla97C06G118620	Cucurbita moschata (Rifu)	cmowmbB171
Cla97C06G118620	Cucurbita moschata (Rifu)	cmowmbB796
Cla97C06G118620	Cucurbita moschata (Rifu)	cmowmbB895
Cla97C06G118620	Wild cucumber (PI 183967)	cpiwmbB083
Cla97C06G118620	Wild cucumber (PI 183967)	cpiwmbB151
Cla97C06G118620	Wild cucumber (PI 183967)	cpiwmbB571
Cla97C06G118620	Cucumber (Chinese Long) v3	cucwmbB079
Cla97C06G118620	Cucumber (Chinese Long) v3	cucwmbB150
Cla97C06G118620	Cucumber (Chinese Long) v2	cuwmbB082
Cla97C06G118620	Cucumber (Chinese Long) v2	cuwmbB149
Cla97C06G118620	Cucumber (Chinese Long) v2	cuwmbB544
Cla97C06G118620	Bottle gourd (USVL1VR-Ls)	lsiwmbB096
Cla97C06G118620	Bottle gourd (USVL1VR-Ls)	lsiwmbB378
Cla97C06G118620	Melon (DHL92) v3.6.1	medwmbB183
Cla97C06G118620	Melon (DHL92) v3.6.1	medwmbB248
Cla97C06G118620	Melon (DHL92) v3.6.1	medwmbB249
Cla97C06G118620	Melon (DHL92) v3.6.1	medwmbB381
Cla97C06G118620	Melon (DHL92) v3.5.1	mewmbB197
Cla97C06G118620	Melon (DHL92) v3.5.1	mewmbB262
Cla97C06G118620	Melon (DHL92) v3.5.1	mewmbB263
Cla97C06G118620	Melon (DHL92) v3.5.1	mewmbB391
Cla97C06G118620	Watermelon (Charleston Gray)	wcgwmbB028
Cla97C06G118620	Watermelon (Charleston Gray)	wcgwmbB077
Cla97C06G118620	Watermelon (Charleston Gray)	wcgwmbB273
Cla97C06G118620	Watermelon (97103) v1	wmwmbB034
Cla97C06G118620	Watermelon (97103) v1	wmwmbB374
Cla97C06G118620	Wax gourd	wgowmbB140
Cla97C06G118620	Wax gourd	wgowmbB589
Cla97C06G118620	Wax gourd	wgowmbB651
Cla97C06G118620	Wax gourd	wgowmbB659