Cla97C06G117760 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C06G117760
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Ribulose bisphosphate carboxylase large chain
Location	Cla97Chr06 : 10227970 .. 10229000 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAGAGTATTCATGTGAGATTTTTTCAGATTTTGTACGTGTGATATATGTTCCCTCAGCATTCCGAGTAACTCCTCAACCAGGAGTTCCAATTGAGGAAGCAGGGGCCGCTATAGCTGCTAAATCTTCTACTGATACATGGACAACTGTGTGGACCGATGGAGAATTCAAGTATTGTATACATCATTAGTCCGATCCTTTGTAGGAACTACCCGTAATAACGAACTTGTGATGTATGGAATATATGACAAAGGTGGAGTTTTAGAGTATTTCTATTGCTCGGTCATGTCATATACGTTCGAGTCATCGTTTTTTTACCAAAAAAGAAGACCTTTCATTATTATTCATTGTTAATAATGGTAAGAAACGAAGAAATTTCTTTGTTGAGTAATAACTTAATTCTTTACTAAAATACTATTTATTATAAATATCAATAACCCATCTTCTTATCAATGATTGAAGATAAGAAAAATGAAAAGAACCTTTTTCCGGGTTTTGAATTGACACAAAAACTAAAGAAGAGATCTTGGCAGAATTGCCAGATATGGAATTGAGCACAATTTTTCAAAGAAATAACTCATTTGTTTCTCACACCAATGTTTTTCAGAGAAGTACATCATGTAATCAAAAAAGTTGATCTTATTGAGAAACCGATGTCAAATCACCGATTATACCCTTACATACATGGTTACCAGATACCCACGGAGAGGCACATTACAGTACTTGTATGCTTCTTGCTGGAATATTATTAAAAATGGGAGCATATGGATTGGTTCGGATCAATATGGAATTATTACCCCACGCCCATTCTATCTTTTCACCCTGGTTGATCATAGTAGGCATAATTCAAATAATCTATGCAGCTTCAACATCTTCGGGTCAACGCTAGATCTTCTATTTTCTATTCCTTCGCTGCTCTCAGGGTTGGGTTGCTTTGGTTTTGATGCATTTCATGTAACCGGATTGTATGATCCGGGAATCTGGGTATCCGATCCTTATGGATTAACCGGAAGGTATCTAGATCATTAA

mRNA sequence

ATGGTAGAGTATTCATGTGAGATTTTTTCAGATTTTGTACGTGTGATATATGTTCCCTCAGCATTCCGAGTAACTCCTCAACCAGGAGTTCCAATTGAGGAAGCAGGGGCCGCTATAGCTGCTAAATCTTCTACTGATACATGGACAACTGTGTGGACCGATGGAGAATTCAAATACCCACGGAGAGGCACATTACAGTACTTGTATGCTTCTTGCTGGAATATTATTAAAAATGGGAGCATATGGATTGGTTCGGATCAATATGGAATTATTACCCCACGCCCATTCTATCTTTTCACCCTGGTTGATCATAGTAGGCATAATTCAAATAATCTATGCAGCTTCAACATCTTCGGGTCAACGCTAGATCTTCTATTTTCTATTCCTTCGCTGCTCTCAGGGTTGGGTTGCTTTGGTTTTGATGCATTTCATGTAACCGGATTGTATGATCCGGGAATCTGGGTATCCGATCCTTATGGATTAACCGGAAGGTATCTAGATCATTAA

Coding sequence (CDS)

ATGGTAGAGTATTCATGTGAGATTTTTTCAGATTTTGTACGTGTGATATATGTTCCCTCAGCATTCCGAGTAACTCCTCAACCAGGAGTTCCAATTGAGGAAGCAGGGGCCGCTATAGCTGCTAAATCTTCTACTGATACATGGACAACTGTGTGGACCGATGGAGAATTCAAATACCCACGGAGAGGCACATTACAGTACTTGTATGCTTCTTGCTGGAATATTATTAAAAATGGGAGCATATGGATTGGTTCGGATCAATATGGAATTATTACCCCACGCCCATTCTATCTTTTCACCCTGGTTGATCATAGTAGGCATAATTCAAATAATCTATGCAGCTTCAACATCTTCGGGTCAACGCTAGATCTTCTATTTTCTATTCCTTCGCTGCTCTCAGGGTTGGGTTGCTTTGGTTTTGATGCATTTCATGTAACCGGATTGTATGATCCGGGAATCTGGGTATCCGATCCTTATGGATTAACCGGAAGGTATCTAGATCATTAA

Protein sequence

MVEYSCEIFSDFVRVIYVPSAFRVTPQPGVPIEEAGAAIAAKSSTDTWTTVWTDGEFKYPRRGTLQYLYASCWNIIKNGSIWIGSDQYGIITPRPFYLFTLVDHSRHNSNNLCSFNIFGSTLDLLFSIPSLLSGLGCFGFDAFHVTGLYDPGIWVSDPYGLTGRYLDH

Homology

[Close]

BLAST of Cla97C06G117760 vs. NCBI nr
Match: YP_247626.1 (photosystem II 47 kDa protein [Cucumis sativus] >CAJ00785.1 photosystem II 47kDa protein (chloroplast) [Cucumis sativus])

HSP 1 Score: 76.6 bits (187), Expect = 8.7e-11
Identity = 36/46 (78.26%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 121 TLDL--LFSIPSLLSGLGCFGFDAFHVTGLYDPGIWVSDPYGLTGR 165
           +LDL  +F I   LSGLGCFGF AFHVTGLY PGIWVSDPYGLTGR
Sbjct: 132 SLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGR 177

[Close]

BLAST of Cla97C06G117760 vs. NCBI nr
Match: ABK55741.1 (chloroplast photosystem II CP47 protein, partial [Cucumis sativus])

HSP 1 Score: 76.6 bits (187), Expect = 8.7e-11
Identity = 36/46 (78.26%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 121 TLDL--LFSIPSLLSGLGCFGFDAFHVTGLYDPGIWVSDPYGLTGR 165
           +LDL  +F I   LSGLGCFGF AFHVTGLY PGIWVSDPYGLTGR
Sbjct: 78  SLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGR 123

[Close]

BLAST of Cla97C06G117760 vs. NCBI nr
Match: AXR94541.1 (photosystem II CP47 chlorophyll apoprotein (chloroplast) [Hodgsonia macrocarpa] >AXR94627.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Hodgsonia macrocarpa] >AXR94711.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Hodgsonia macrocarpa] >AXR94796.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Hodgsonia macrocarpa])

HSP 1 Score: 76.6 bits (187), Expect = 8.7e-11
Identity = 36/46 (78.26%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 121 TLDL--LFSIPSLLSGLGCFGFDAFHVTGLYDPGIWVSDPYGLTGR 165
           +LDL  +F I   LSGLGCFGF AFHVTGLY PGIWVSDPYGLTGR
Sbjct: 132 SLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGR 177

[Close]

BLAST of Cla97C06G117760 vs. NCBI nr
Match: YP_009317412.1 (photosystem II 47 kDa protein (chloroplast) [Coccinia grandis] >YP_009326015.1 photosystem II 47 kDa protein (chloroplast) [Citrullus lanatus] >YP_009348057.1 photosystem II 47 kDa protein (plastid) [Citrullus mucosospermus] >YP_009420820.1 photosystem II 47 kDa protein (chloroplast) [Citrullus colocynthis] >YP_009431583.1 photosystem II 47 kDa protein (chloroplast) [Citrullus amarus] >YP_009431668.1 photosystem II 47 kDa protein (chloroplast) [Citrullus rehmii] >YP_009447476.1 photosystem II 47 kDa protein (chloroplast) [Cucurbita maxima] >YP_009447561.1 photosystem II 47 kDa protein (chloroplast) [Cucurbita moschata] >YP_009456172.1 photosystem II 47 kDa protein (chloroplast) [Lagenaria siceraria] >YP_009505106.1 photosystem II 47 kDa protein (chloroplast) [Cucurbita pepo] >AHM88687.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM88919.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM88977.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM89036.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM89095.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM89154.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM89213.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM89272.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM89332.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM89391.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM89450.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM89509.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM89569.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM89628.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM89687.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM89746.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM89805.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM89864.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM89923.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM89982.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM90041.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM90100.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM90159.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM90218.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM90277.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM90336.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM90395.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM90454.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM90513.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM90572.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM90631.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM90690.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM90749.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM90808.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM90867.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM90926.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM90985.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM91044.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >AHM91277.1 photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria] >ALO21734.1 PsbB (plastid) [Cucurbita argyrosperma] >ALO21777.1 PsbB (plastid) [Cucurbita argyrosperma var. palmeri] >ALO21951.1 PsbB (plastid) [Cucurbita cordata] >ALO21984.1 PsbB (plastid) [Cucurbita digitata] >ALO22039.1 PsbB (plastid) [Cucurbita ecuadorensis] >ALO22131.1 PsbB (plastid) [Cucurbita ficifolia] >ALO22240.1 PsbB (plastid) [Cucurbita lundelliana] >ALO22341.1 PsbB (plastid) [Cucurbita maxima subsp. andreana] >ALO22363.1 PsbB (plastid) [Cucurbita moschata] >ALO22460.1 PsbB (plastid) [Cucurbita okeechobeensis] >ALO22533.1 PsbB (plastid) [Cucurbita okeechobeensis subsp. martinezii] >ALO22583.1 PsbB (plastid) [Cucurbita pepo subsp. fraterna] >ALO22664.1 PsbB (plastid) [Cucurbita pepo subsp. ovifera] >ALO22701.1 PsbB (plastid) [Cucurbita pepo var. ozarkana] >ALO22751.1 PsbB (plastid) [Cucurbita pepo subsp. pepo] >ALO22801.1 PsbB (plastid) [Cucurbita pepo var. texana] >ALO22876.1 PsbB (plastid) [Cucurbita pedatifolia] >AOX48727.1 photosystem II 47 kDa protein (chloroplast) [Coccinia grandis] >AOX48812.1 photosystem II 47 kDa protein (chloroplast) [Coccinia grandis] >APD52506.1 photosystem II 47 kDa protein (chloroplast) [Citrullus lanatus] >APW82488.1 photosystem II 47 kDa protein (plastid) [Citrullus lanatus subsp. vulgaris] >APW82573.1 photosystem II 47 kDa protein (plastid) [Citrullus lanatus subsp. vulgaris] >APW82658.1 photosystem II 47 kDa protein (plastid) [Citrullus lanatus subsp. vulgaris] >APW82743.1 photosystem II 47 kDa protein (plastid) [Citrullus mucosospermus] >APW82828.1 photosystem II 47 kDa protein (plastid) [Citrullus mucosospermus] >APW82913.1 photosystem II 47 kDa protein (plastid) [Citrullus lanatus subsp. vulgaris] >APW82998.1 photosystem II 47 kDa protein (plastid) [Citrullus lanatus subsp. vulgaris] >APW83083.1 photosystem II 47 kDa protein (plastid) [Citrullus lanatus subsp. vulgaris] >APW83168.1 photosystem II 47 kDa protein (plastid) [Citrullus lanatus subsp. vulgaris] >APW83253.1 photosystem II 47 kDa protein (plastid) [Citrullus lanatus subsp. vulgaris] >APW83338.1 photosystem II 47 kDa protein (plastid) [Citrullus mucosospermus] >ASP44455.1 photosystem II 47 kDa protein (chloroplast) [Citrullus colocynthis] >ASY96151.1 photosystem II 47 kDa protein (chloroplast) [Citrullus amarus] >ASY96236.1 photosystem II 47 kDa protein (chloroplast) [Citrullus rehmii] >ATY69866.1 photosystem II 47 kDa protein (chloroplast) [Cucurbita maxima] >ATY69951.1 photosystem II 47 kDa protein (chloroplast) [Cucurbita moschata] >AUJ21937.1 photosystem II 47 kDa protein (chloroplast) [Lagenaria siceraria] >AWX90343.1 photosystem II 47 kDa protein (chloroplast) [Cucurbita pepo])

HSP 1 Score: 76.6 bits (187), Expect = 8.7e-11
Identity = 36/46 (78.26%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 121 TLDL--LFSIPSLLSGLGCFGFDAFHVTGLYDPGIWVSDPYGLTGR 165
           +LDL  +F I   LSGLGCFGF AFHVTGLY PGIWVSDPYGLTGR
Sbjct: 132 SLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGR 177

[Close]

BLAST of Cla97C06G117760 vs. NCBI nr
Match: AHM88746.1 (photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 76.6 bits (187), Expect = 8.7e-11
Identity = 36/46 (78.26%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 121 TLDL--LFSIPSLLSGLGCFGFDAFHVTGLYDPGIWVSDPYGLTGR 165
           +LDL  +F I   LSGLGCFGF AFHVTGLY PGIWVSDPYGLTGR
Sbjct: 132 SLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGR 177

[Close]

BLAST of Cla97C06G117760 vs. TrEMBL
Match: tr|X2F2N4|X2F2N4_LAGSI (Photosystem II CP47 reaction center protein OS=Lagenaria siceraria OX=3668 GN=psbB PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 5.8e-11
Identity = 36/46 (78.26%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 121 TLDL--LFSIPSLLSGLGCFGFDAFHVTGLYDPGIWVSDPYGLTGR 165
           +LDL  +F I   LSGLGCFGF AFHVTGLY PGIWVSDPYGLTGR
Sbjct: 132 SLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGR 177

[Close]

BLAST of Cla97C06G117760 vs. TrEMBL
Match: tr|A0A286NFP0|A0A286NFP0_CUCME (Photosystem II CP47 reaction center protein OS=Cucumis melo var. flexuosus OX=1120798 GN=psbB PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 5.8e-11
Identity = 36/46 (78.26%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 121 TLDL--LFSIPSLLSGLGCFGFDAFHVTGLYDPGIWVSDPYGLTGR 165
           +LDL  +F I   LSGLGCFGF AFHVTGLY PGIWVSDPYGLTGR
Sbjct: 132 SLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGR 177

[Close]

BLAST of Cla97C06G117760 vs. TrEMBL
Match: tr|A0A249RXQ2|A0A249RXQ2_CUCME (Photosystem II CP47 reaction center protein OS=Cucumis melo subsp. agrestis OX=217619 GN=psbB PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 5.8e-11
Identity = 36/46 (78.26%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 121 TLDL--LFSIPSLLSGLGCFGFDAFHVTGLYDPGIWVSDPYGLTGR 165
           +LDL  +F I   LSGLGCFGF AFHVTGLY PGIWVSDPYGLTGR
Sbjct: 132 SLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGR 177

[Close]

BLAST of Cla97C06G117760 vs. TrEMBL
Match: tr|A0A0S2IFN4|A0A0S2IFN4_CUCMO (Photosystem II CP47 reaction center protein OS=Cucurbita moschata OX=3662 GN=psbB PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 5.8e-11
Identity = 36/46 (78.26%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 121 TLDL--LFSIPSLLSGLGCFGFDAFHVTGLYDPGIWVSDPYGLTGR 165
           +LDL  +F I   LSGLGCFGF AFHVTGLY PGIWVSDPYGLTGR
Sbjct: 132 SLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGR 177

[Close]

BLAST of Cla97C06G117760 vs. TrEMBL
Match: tr|A0A1P8LDA4|A0A1P8LDA4_CITLA (Photosystem II CP47 reaction center protein OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=psbB PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 5.8e-11
Identity = 36/46 (78.26%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 121 TLDL--LFSIPSLLSGLGCFGFDAFHVTGLYDPGIWVSDPYGLTGR 165
           +LDL  +F I   LSGLGCFGF AFHVTGLY PGIWVSDPYGLTGR
Sbjct: 132 SLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGR 177

[Close]

BLAST of Cla97C06G117760 vs. Swiss-Prot
Match: sp|Q2QD63|PSBB_CUCSA (Photosystem II CP47 reaction center protein OS=Cucumis sativus OX=3659 GN=psbB PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.9e-13
Identity = 36/46 (78.26%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 121 TLDL--LFSIPSLLSGLGCFGFDAFHVTGLYDPGIWVSDPYGLTGR 165
           +LDL  +F I   LSGLGCFGF AFHVTGLY PGIWVSDPYGLTGR
Sbjct: 132 SLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLTGR 177

[Close]

BLAST of Cla97C06G117760 vs. Swiss-Prot
Match: sp|A8SEC9|PSBB_CERDE (Photosystem II CP47 reaction center protein OS=Ceratophyllum demersum OX=4428 GN=psbB PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.2e-12
Identity = 34/46 (73.91%), Postives = 37/46 (80.43%), Query Frame = 0


Query: 121 TLDL--LFSIPSLLSGLGCFGFDAFHVTGLYDPGIWVSDPYGLTGR 165
           +LDL  +F I   LSGL CFGF AFHVTGLY PGIWVSDPYGLTG+
Sbjct: 132 SLDLPKIFGIHLFLSGLACFGFGAFHVTGLYGPGIWVSDPYGLTGK 177

[Close]

BLAST of Cla97C06G117760 vs. Swiss-Prot
Match: sp|A6MMN3|PSBB_DIOEL (Photosystem II CP47 reaction center protein OS=Dioscorea elephantipes OX=145284 GN=psbB PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.2e-12
Identity = 34/46 (73.91%), Postives = 37/46 (80.43%), Query Frame = 0


Query: 121 TLDL--LFSIPSLLSGLGCFGFDAFHVTGLYDPGIWVSDPYGLTGR 165
           +LDL  +F I   LSGL CFGF AFHVTGLY PGIWVSDPYGLTG+
Sbjct: 132 SLDLPKIFGIHLFLSGLACFGFGAFHVTGLYGPGIWVSDPYGLTGK 177

[Close]

BLAST of Cla97C06G117760 vs. Swiss-Prot
Match: sp|A7Y3H4|PSBB_IPOPU (Photosystem II CP47 reaction center protein OS=Ipomoea purpurea OX=4121 GN=psbB PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.2e-12
Identity = 34/46 (73.91%), Postives = 37/46 (80.43%), Query Frame = 0


Query: 121 TLDL--LFSIPSLLSGLGCFGFDAFHVTGLYDPGIWVSDPYGLTGR 165
           +LDL  +F I   LSGL CFGF AFHVTGLY PGIWVSDPYGLTG+
Sbjct: 132 SLDLPKIFGIHLFLSGLACFGFGAFHVTGLYGPGIWVSDPYGLTGK 177

[Close]

BLAST of Cla97C06G117760 vs. Swiss-Prot
Match: sp|Q9BBQ8|PSBB_LOTJA (Photosystem II CP47 reaction center protein OS=Lotus japonicus OX=34305 GN=psbB PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.2e-12
Identity = 34/46 (73.91%), Postives = 37/46 (80.43%), Query Frame = 0


Query: 121 TLDL--LFSIPSLLSGLGCFGFDAFHVTGLYDPGIWVSDPYGLTGR 165
           +LDL  +F I   L+GL CFGF AFHVTGLY PGIWVSDPYGLTGR
Sbjct: 132 SLDLPKIFGIHLFLAGLACFGFGAFHVTGLYGPGIWVSDPYGLTGR 177

[Close]

BLAST of Cla97C06G117760 vs. TAIR10
Match: ATCG00680.1 (photosystem II reaction center protein B)

HSP 1 Score: 72.0 bits (175), Expect = 3.9e-13
Identity = 33/46 (71.74%), Postives = 37/46 (80.43%), Query Frame = 0


Query: 121 TLDL--LFSIPSLLSGLGCFGFDAFHVTGLYDPGIWVSDPYGLTGR 165
           +LDL  +F I   LSG+ CFGF AFHVTGLY PGIWVSDPYGLTG+
Sbjct: 132 SLDLPKIFGIHLFLSGVACFGFGAFHVTGLYGPGIWVSDPYGLTGK 177

[Close]

BLAST of Cla97C06G117760 vs. TAIR10
Match: ATCG00490.1 (ribulose-bisphosphate carboxylases)

HSP 1 Score: 68.6 bits (166), Expect = 4.3e-12
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 20 SAFRVTPQPGVPIEEAGAAIAAKSSTDTWTTVWTDG 56
          +AFRVTPQPGVP EEAGAA+AA+SST TWTTVWTDG
Sbjct: 38 AAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDG 73

The following BLAST results are available for this feature:

BLAST of Cla97C06G117760 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_247626.1	8.7e-11	78.26	photosystem II 47 kDa protein [Cucumis sativus] >CAJ00785.1 photosystem II 47kDa...	[more]
ABK55741.1	8.7e-11	78.26	chloroplast photosystem II CP47 protein, partial [Cucumis sativus]	[more]
AXR94541.1	8.7e-11	78.26	photosystem II CP47 chlorophyll apoprotein (chloroplast) [Hodgsonia macrocarpa] ...	[more]
YP_009317412.1	8.7e-11	78.26	photosystem II 47 kDa protein (chloroplast) [Coccinia grandis] >YP_009326015.1 p...	[more]
AHM88746.1	8.7e-11	78.26	photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria]	[more]

BLAST of Cla97C06G117760 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|X2F2N4\|X2F2N4_LAGSI	5.8e-11	78.26	Photosystem II CP47 reaction center protein OS=Lagenaria siceraria OX=3668 GN=ps...	[more]
tr\|A0A286NFP0\|A0A286NFP0_CUCME	5.8e-11	78.26	Photosystem II CP47 reaction center protein OS=Cucumis melo var. flexuosus OX=11...	[more]
tr\|A0A249RXQ2\|A0A249RXQ2_CUCME	5.8e-11	78.26	Photosystem II CP47 reaction center protein OS=Cucumis melo subsp. agrestis OX=2...	[more]
tr\|A0A0S2IFN4\|A0A0S2IFN4_CUCMO	5.8e-11	78.26	Photosystem II CP47 reaction center protein OS=Cucurbita moschata OX=3662 GN=psb...	[more]
tr\|A0A1P8LDA4\|A0A1P8LDA4_CITLA	5.8e-11	78.26	Photosystem II CP47 reaction center protein OS=Citrullus lanatus subsp. vulgaris...	[more]

BLAST of Cla97C06G117760 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q2QD63\|PSBB_CUCSA	2.9e-13	78.26	Photosystem II CP47 reaction center protein OS=Cucumis sativus OX=3659 GN=psbB P...	[more]
sp\|A8SEC9\|PSBB_CERDE	3.2e-12	73.91	Photosystem II CP47 reaction center protein OS=Ceratophyllum demersum OX=4428 GN...	[more]
sp\|A6MMN3\|PSBB_DIOEL	3.2e-12	73.91	Photosystem II CP47 reaction center protein OS=Dioscorea elephantipes OX=145284 ...	[more]
sp\|A7Y3H4\|PSBB_IPOPU	3.2e-12	73.91	Photosystem II CP47 reaction center protein OS=Ipomoea purpurea OX=4121 GN=psbB ...	[more]
sp\|Q9BBQ8\|PSBB_LOTJA	3.2e-12	73.91	Photosystem II CP47 reaction center protein OS=Lotus japonicus OX=34305 GN=psbB ...	[more]

BLAST of Cla97C06G117760 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00680.1	3.9e-13	71.74	photosystem II reaction center protein B	[more]
ATCG00490.1	4.3e-12	86.11	ribulose-bisphosphate carboxylases	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0015977	carbon fixation
GO:0009767	photosynthetic electron transport chain
GO:0019684	photosynthesis, light reaction

Vocabulary: **Molecular Function**
Term	Definition
GO:0016984	ribulose-bisphosphate carboxylase activity
GO:0016168	chlorophyll binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane
GO:0009521	photosystem

Vocabulary: **INTERPRO**
Term	Definition
IPR036001	PS_II_antenna-like_sf
IPR036422	RuBisCO_lsu_N_sf
IPR017443	RuBisCO_lsu_fd_N
IPR000932	PS_antenna-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015977	carbon fixation
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0009853	photorespiration
biological_process	GO:0015979	photosynthesis
biological_process	GO:0019253	reductive pentose-phosphate cycle
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0009767	photosynthetic electron transport chain
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009536	plastid
cellular_component	GO:0009521	photosystem
cellular_component	GO:0016020	membrane
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016984	ribulose-bisphosphate carboxylase activity
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0004497	monooxygenase activity
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0016829	lyase activity
molecular_function	GO:0016168	chlorophyll binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C06G117760.1	Cla97C06G117760.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000932	Photosystem antenna protein-like	PFAM	PF00421	PSII	coord: 118..160 e-value: 6.7E-11 score: 41.4
IPR017443	Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal	PFAM	PF02788	RuBisCO_large_N	coord: 20..56 e-value: 1.3E-10 score: 41.3
IPR036422	RuBisCO large subunit, N-terminal domain superfamily	GENE3D	G3DSA:3.30.70.150		coord: 14..88 e-value: 6.2E-12 score: 47.4
IPR036422	RuBisCO large subunit, N-terminal domain superfamily	SUPERFAMILY	SSF54966	RuBisCO, large subunit, small (N-terminal) domain	coord: 17..70
None	No IPR available	PANTHER	PTHR42704:SF2	RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN	coord: 19..59
None	No IPR available	PANTHER	PTHR42704	FAMILY NOT NAMED	coord: 19..59
IPR036001	Photosystem antenna protein-like superfamily	SUPERFAMILY	SSF161077	Photosystem II antenna protein-like	coord: 61..164

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C06G117760	Watermelon (97103) v2	wmbwmbB137
Cla97C06G117760	Silver-seed gourd	carwmbB0230
Cla97C06G117760	Silver-seed gourd	carwmbB1009
Cla97C06G117760	Silver-seed gourd	carwmbB1136
Cla97C06G117760	Cucumber (Gy14) v2	cgybwmbB142
Cla97C06G117760	Cucumber (Gy14) v2	cgybwmbB222
Cla97C06G117760	Cucumber (Gy14) v1	cgywmbB453
Cla97C06G117760	Cucumber (Gy14) v1	cgywmbB466
Cla97C06G117760	Cucurbita maxima (Rimu)	cmawmbB266
Cla97C06G117760	Cucurbita maxima (Rimu)	cmawmbB377
Cla97C06G117760	Cucurbita maxima (Rimu)	cmawmbB865
Cla97C06G117760	Cucurbita maxima (Rimu)	cmawmbB919
Cla97C06G117760	Cucurbita moschata (Rifu)	cmowmbB246
Cla97C06G117760	Cucurbita moschata (Rifu)	cmowmbB361
Cla97C06G117760	Cucurbita moschata (Rifu)	cmowmbB837
Cla97C06G117760	Cucurbita moschata (Rifu)	cmowmbB893
Cla97C06G117760	Wild cucumber (PI 183967)	cpiwmbB150
Cla97C06G117760	Wild cucumber (PI 183967)	cpiwmbB239
Cla97C06G117760	Cucumber (Chinese Long) v3	cucwmbB149
Cla97C06G117760	Cucumber (Chinese Long) v3	cucwmbB233
Cla97C06G117760	Cucumber (Chinese Long) v2	cuwmbB148
Cla97C06G117760	Cucumber (Chinese Long) v2	cuwmbB231
Cla97C06G117760	Bottle gourd (USVL1VR-Ls)	lsiwmbB026
Cla97C06G117760	Bottle gourd (USVL1VR-Ls)	lsiwmbB341
Cla97C06G117760	Melon (DHL92) v3.6.1	medwmbB386
Cla97C06G117760	Melon (DHL92) v3.6.1	medwmbB442
Cla97C06G117760	Melon (DHL92) v3.5.1	mewmbB397
Cla97C06G117760	Melon (DHL92) v3.5.1	mewmbB448
Cla97C06G117760	Watermelon (Charleston Gray)	wcgwmbB237
Cla97C06G117760	Watermelon (Charleston Gray)	wcgwmbB273
Cla97C06G117760	Watermelon (97103) v1	wmwmbB217
Cla97C06G117760	Watermelon (97103) v1	wmwmbB406
Cla97C06G117760	Wax gourd	wgowmbB097
Cla97C06G117760	Wax gourd	wgowmbB206