Cla97C06G116600 (gene) Watermelon (97103) v2

Overview
NameCla97C06G116600
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionUnknown protein
LocationCla97Chr06 : 7916925 .. 7917158 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATGTGAAATGGGTAATGGTGTTTGCAATTGCAGTGGTGCTTCTCACCGCTGAGGCTCACCAGCCAACGCTTACTCAAAATGATCCTTATTATCCTAAGGAAATGGAGTCGTCCGTGGCTGAAAAAAAGAAGTTCGTGGGCCAACGCGGTGATCACAGTACCGATCCTAAGCACGGAAAAGGATGCCATAAAAACGCATATGACAGGTGCAAGCCACCCATGTCCGACTGA

mRNA sequence

ATGTATGTGAAATGGGTAATGGTGTTTGCAATTGCAGTGGTGCTTCTCACCGCTGAGGCTCACCAGCCAACGCTTACTCAAAATGATCCTTATTATCCTAAGGAAATGGAGTCGTCCGTGGCTGAAAAAAAGAAGTTCGTGGGCCAACGCGGTGATCACAGTACCGATCCTAAGCACGGAAAAGGATGCCATAAAAACGCATATGACAGGTGCAAGCCACCCATGTCCGACTGA

Coding sequence (CDS)

ATGTATGTGAAATGGGTAATGGTGTTTGCAATTGCAGTGGTGCTTCTCACCGCTGAGGCTCACCAGCCAACGCTTACTCAAAATGATCCTTATTATCCTAAGGAAATGGAGTCGTCCGTGGCTGAAAAAAAGAAGTTCGTGGGCCAACGCGGTGATCACAGTACCGATCCTAAGCACGGAAAAGGATGCCATAAAAACGCATATGACAGGTGCAAGCCACCCATGTCCGACTGA

Protein sequence

MYVKWVMVFAIAVVLLTAEAHQPTLTQNDPYYPKEMESSVAEKKKFVGQRGDHSTDPKHGKGCHKNAYDRCKPPMSD
Homology
[Close]
BLAST of Cla97C06G116600 vs. NCBI nr
Match: KGN61603.1 (hypothetical protein Csa_2G176170 [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 7.8e-07
Identity = 38/76 (50.00%), Postives = 43/76 (56.58%), Query Frame = 0 

Query: 1  MYVKWVMVFAIAVVLLTA----EAHQPTLTQNDPYYPKEMESSVAEKKKFVGQRGDHSTD 60
          M +KWVMVFAIA+VLLTA    EAH+PTLT NDP           E K  VG  GD +  
Sbjct: 1  MSLKWVMVFAIAMVLLTAETATEAHRPTLTPNDP-----------EMKSMVGHAGDKTIP 60

Query: 61 PKHGKGCHKNAYDRCK 73
             GKGC K  +  CK
Sbjct: 61 AHGGKGCKKGPHSNCK 65

[Close]
BLAST of Cla97C06G116600 vs. TrEMBL
Match: tr|A0A0A0LII8|A0A0A0LII8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G176170 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.2e-07
Identity = 38/76 (50.00%), Postives = 43/76 (56.58%), Query Frame = 0 

Query: 1  MYVKWVMVFAIAVVLLTA----EAHQPTLTQNDPYYPKEMESSVAEKKKFVGQRGDHSTD 60
          M +KWVMVFAIA+VLLTA    EAH+PTLT NDP           E K  VG  GD +  
Sbjct: 1  MSLKWVMVFAIAMVLLTAETATEAHRPTLTPNDP-----------EMKSMVGHAGDKTIP 60

Query: 61 PKHGKGCHKNAYDRCK 73
             GKGC K  +  CK
Sbjct: 61 AHGGKGCKKGPHSNCK 65

The following BLAST results are available for this feature:
BLAST of Cla97C06G116600 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN61603.17.8e-0750.00hypothetical protein Csa_2G176170 [Cucumis sativus][more]
BLAST of Cla97C06G116600 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LII8|A0A0A0LII8_CUCSA5.2e-0750.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G176170 PE=4 SV=1[more]
BLAST of Cla97C06G116600 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C06G116600 vs. TAIR10
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C06G116600.1Cla97C06G116600.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 25..77
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..71

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C06G116600Watermelon (97103) v2wmbwmbB137
Cla97C06G116600Watermelon (97103) v2wmbwmbB156
Cla97C06G116600Silver-seed gourdcarwmbB0230
Cla97C06G116600Silver-seed gourdcarwmbB0237
Cla97C06G116600Silver-seed gourdcarwmbB0787
Cla97C06G116600Silver-seed gourdcarwmbB0819
Cla97C06G116600Silver-seed gourdcarwmbB1009
Cla97C06G116600Silver-seed gourdcarwmbB1133
Cla97C06G116600Cucumber (Gy14) v2cgybwmbB141
Cla97C06G116600Cucumber (Gy14) v2cgybwmbB222
Cla97C06G116600Cucumber (Gy14) v1cgywmbB038
Cla97C06G116600Cucumber (Gy14) v1cgywmbB453
Cla97C06G116600Cucumber (Gy14) v1cgywmbB658
Cla97C06G116600Cucurbita maxima (Rimu)cmawmbB266
Cla97C06G116600Cucurbita maxima (Rimu)cmawmbB377
Cla97C06G116600Cucurbita maxima (Rimu)cmawmbB539
Cla97C06G116600Cucurbita maxima (Rimu)cmawmbB653
Cla97C06G116600Cucurbita maxima (Rimu)cmawmbB865
Cla97C06G116600Cucurbita maxima (Rimu)cmawmbB921
Cla97C06G116600Cucurbita moschata (Rifu)cmowmbB246
Cla97C06G116600Cucurbita moschata (Rifu)cmowmbB361
Cla97C06G116600Cucurbita moschata (Rifu)cmowmbB520
Cla97C06G116600Cucurbita moschata (Rifu)cmowmbB627
Cla97C06G116600Cucurbita moschata (Rifu)cmowmbB837
Cla97C06G116600Cucurbita moschata (Rifu)cmowmbB896
Cla97C06G116600Wild cucumber (PI 183967)cpiwmbB149
Cla97C06G116600Wild cucumber (PI 183967)cpiwmbB239
Cla97C06G116600Wild cucumber (PI 183967)cpiwmbB242
Cla97C06G116600Cucumber (Chinese Long) v3cucwmbB148
Cla97C06G116600Cucumber (Chinese Long) v3cucwmbB233
Cla97C06G116600Cucumber (Chinese Long) v3cucwmbB236
Cla97C06G116600Cucumber (Chinese Long) v2cuwmbB147
Cla97C06G116600Cucumber (Chinese Long) v2cuwmbB231
Cla97C06G116600Cucumber (Chinese Long) v2cuwmbB234
Cla97C06G116600Bottle gourd (USVL1VR-Ls)lsiwmbB026
Cla97C06G116600Bottle gourd (USVL1VR-Ls)lsiwmbB341
Cla97C06G116600Bottle gourd (USVL1VR-Ls)lsiwmbB342
Cla97C06G116600Melon (DHL92) v3.6.1medwmbB378
Cla97C06G116600Melon (DHL92) v3.6.1medwmbB442
Cla97C06G116600Melon (DHL92) v3.5.1mewmbB388
Cla97C06G116600Melon (DHL92) v3.5.1mewmbB448
Cla97C06G116600Watermelon (Charleston Gray)wcgwmbB237
Cla97C06G116600Watermelon (Charleston Gray)wcgwmbB273
Cla97C06G116600Watermelon (Charleston Gray)wcgwmbB305
Cla97C06G116600Watermelon (97103) v1wmwmbB165
Cla97C06G116600Watermelon (97103) v1wmwmbB217
Cla97C06G116600Watermelon (97103) v1wmwmbB406
Cla97C06G116600Wax gourdwgowmbB095
Cla97C06G116600Wax gourdwgowmbB204
Cla97C06G116600Wax gourdwgowmbB259