Cla97C06G115880 (gene) Watermelon (97103) v2

Overview
NameCla97C06G115880
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionReverse transcriptase
LocationCla97Chr06 : 6940430 .. 6940909 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTAAAGATCCGTGGTTACCAAAAGAATGTACTCCTAAATCAAGATGCTCAAATATGGATTTCATTGAAGCGAGAGTAGCTGACTTTATAACTCCAGAGGGTGCTTGGAATACTGACCTACTGACTATTGCTACCTCACCGGAAGATACTGCTGTTATAAAAAAAATCCCTCCGAATTTGAGGATGGAAGACAAGCTGATTTGGCACTATGACAAATATGGGAAGTATTCAGTAAAGGCAGGGTATAAATGGTTTCAAAAATCGAGATTTTGGTCTAGTTCTTCAAGTGAGAGTTTGTTTAAAGTCCTATGGTCGAAGCTATGGAAGCTAAACGTGCCTCTAAAGATCAGACATTTTATCTGGCGAGCCCTAAAGAATATACTTCCAACTAGGACAAACTTACAACAAAAAGGGATTGAAATTGTACCTTTCTGCCCTGACTTAGGAAACAATCGATCATGCTCTCTTCTATTGTGA

mRNA sequence

ATGTTTAAAGATCCGTGGTTACCAAAAGAATGTACTCCTAAATCAAGATGCTCAAATATGGATTTCATTGAAGCGAGAGTAGCTGACTTTATAACTCCAGAGGGTGCTTGGAATACTGACCTACTGACTATTGCTACCTCACCGGAAGATACTGCTGTTATAAAAAAAATCCCTCCGAATTTGAGGATGGAAGACAAGCTGATTTGGCACTATGACAAATATGGGAAGTATTCAGTAAAGGCAGGGTATAAATGGTTTCAAAAATCGAGATTTTGGTCTAGTTCTTCAAGTGAGAGTTTGTTTAAAGTCCTATGGTCGAAGCTATGGAAGCTAAACGTGCCTCTAAAGATCAGACATTTTATCTGGCGAGCCCTAAAGAATATACTTCCAACTAGGACAAACTTACAACAAAAAGGGATTGAAATTGTACCTTTCTGCCCTGACTTAGGAAACAATCGATCATGCTCTCTTCTATTGTGA

Coding sequence (CDS)

ATGTTTAAAGATCCGTGGTTACCAAAAGAATGTACTCCTAAATCAAGATGCTCAAATATGGATTTCATTGAAGCGAGAGTAGCTGACTTTATAACTCCAGAGGGTGCTTGGAATACTGACCTACTGACTATTGCTACCTCACCGGAAGATACTGCTGTTATAAAAAAAATCCCTCCGAATTTGAGGATGGAAGACAAGCTGATTTGGCACTATGACAAATATGGGAAGTATTCAGTAAAGGCAGGGTATAAATGGTTTCAAAAATCGAGATTTTGGTCTAGTTCTTCAAGTGAGAGTTTGTTTAAAGTCCTATGGTCGAAGCTATGGAAGCTAAACGTGCCTCTAAAGATCAGACATTTTATCTGGCGAGCCCTAAAGAATATACTTCCAACTAGGACAAACTTACAACAAAAAGGGATTGAAATTGTACCTTTCTGCCCTGACTTAGGAAACAATCGATCATGCTCTCTTCTATTGTGA

Protein sequence

MFKDPWLPKECTPKSRCSNMDFIEARVADFITPEGAWNTDLLTIATSPEDTAVIKKIPPNLRMEDKLIWHYDKYGKYSVKAGYKWFQKSRFWSSSSSESLFKVLWSKLWKLNVPLKIRHFIWRALKNILPTRTNLQQKGIEIVPFCPDLGNNRSCSLLL
Homology
[Close]
BLAST of Cla97C06G115880 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 115.2 bits (287), Expect = 2.1e-22
Identity = 57/153 (37.25%), Postives = 87/153 (56.86%), Query Frame = 0 

Query: 2    FKDPWLPKECTPKSRCSNMDFIEARVADFITPEGAWNTDLLTIATSPEDTAVIKKIP-PN 61
            F DPWLP+  T K    N   ++  VA FIT +G W+   ++ +   ED  +I  +P  +
Sbjct: 1028 FSDPWLPRPTTFKPLRFNNGALDTTVASFITADGNWDVTSISHSFCNEDRDLILSMPISS 1087

Query: 62   LRMEDKLIWHYDKYGKYSVKAGYKWFQKSRFWSSSSSESLFKVLWSKLWKLNVPLKIRHF 121
              ++D  +WHYDK G YSV++GYK +   +  ++S+S +     W+ +WKL VP KI+ F
Sbjct: 1088 YNLQDSWLWHYDKRGNYSVRSGYKLYMHLKCNATSASTNYRGTQWNSIWKLTVPTKIKIF 1147

Query: 122  IWRALKNILPTRTNLQQKGIEIVPFCPDLGNNR 154
            IWR+    +PT  NL  +GI  +P C   G+ R
Sbjct: 1148 IWRSAHEHIPTAQNLLLRGIGELPACTICGDRR 1180

[Close]
BLAST of Cla97C06G115880 vs. NCBI nr
Match: BAF22173.1 (Os07g0613900 [Oryza sativa Japonica Group])

HSP 1 Score: 111.7 bits (278), Expect = 2.3e-21
Identity = 57/154 (37.01%), Postives = 91/154 (59.09%), Query Frame = 0 

Query: 1    MFKDPWLPKECTPKSRCSNMDFIEARVADFITPE-GAWNTDLLTIATSPEDTAVIKKIPP 60
            ++ DPW+P + T +        +  RV + I P  G+W+ +LLT    PED  +I+ IP 
Sbjct: 1065 IWSDPWIPSDHTRRPITPRGRNLVTRVEELIDPSTGSWDVELLTQTFWPEDVNMIRTIPV 1124

Query: 61   NLRMEDKLIWHYDKYGKYSVKAGYK-----WFQKSRFWSS--SSSESLFKVLWSKLWKLN 120
            ++ M+D L WHYD+ G +SVK+ YK       Q+ +  S+  S+  +  ++ W K+WK+ 
Sbjct: 1125 HIEMDDMLAWHYDEKGLFSVKSAYKVQRDGELQRRKRGSAGLSNGSTEREMYWKKVWKMQ 1184

Query: 121  VPLKIRHFIWRALKNILPTRTNLQQKGIEIVPFC 147
            +P K++HFIWR   NIL  R NLQQ+G+++   C
Sbjct: 1185 LPGKVKHFIWRFSHNILALRVNLQQRGMDLDSRC 1218

[Close]
BLAST of Cla97C06G115880 vs. NCBI nr
Match: EAZ40645.1 (hypothetical protein OsJ_25114 [Oryza sativa Japonica Group])

HSP 1 Score: 111.7 bits (278), Expect = 2.3e-21
Identity = 57/154 (37.01%), Postives = 91/154 (59.09%), Query Frame = 0 

Query: 1   MFKDPWLPKECTPKSRCSNMDFIEARVADFITPE-GAWNTDLLTIATSPEDTAVIKKIPP 60
           ++ DPW+P + T +        +  RV + I P  G+W+ +LLT    PED  +I+ IP 
Sbjct: 172 IWSDPWIPSDHTRRPITPRGRNLVTRVEELIDPSTGSWDVELLTQTFWPEDVNMIRTIPV 231

Query: 61  NLRMEDKLIWHYDKYGKYSVKAGYK-----WFQKSRFWSS--SSSESLFKVLWSKLWKLN 120
           ++ M+D L WHYD+ G +SVK+ YK       Q+ +  S+  S+  +  ++ W K+WK+ 
Sbjct: 232 HIEMDDMLAWHYDEKGLFSVKSAYKVQRDGELQRRKRGSAGLSNGSTEREMYWKKVWKMQ 291

Query: 121 VPLKIRHFIWRALKNILPTRTNLQQKGIEIVPFC 147
           +P K++HFIWR   NIL  R NLQQ+G+++   C
Sbjct: 292 LPGKVKHFIWRFSHNILALRVNLQQRGMDLDSRC 325

[Close]
BLAST of Cla97C06G115880 vs. NCBI nr
Match: EEE50824.1 (hypothetical protein OsJ_31232 [Oryza sativa Japonica Group])

HSP 1 Score: 105.5 bits (262), Expect = 1.7e-19
Identity = 58/154 (37.66%), Postives = 84/154 (54.55%), Query Frame = 0 

Query: 1    MFKDPWLPKECTPKSRCSNMDFIEARVADFITP-EGAWNTDLLTIATSPEDTAVIKKIPP 60
            ++ DPW+P+  + K        +  +V + I P  G W+ DLL+     ED A IK IP 
Sbjct: 1163 IWADPWIPRGWSRKPMTPRGANLVTKVEELIDPYTGTWDEDLLSQTFWEEDVAAIKSIPV 1222

Query: 61   NLRMEDKLIWHYDKYGKYSVKAGYKWFQKSRFWSS-------SSSESLFKVLWSKLWKLN 120
            ++ MED L WH+D  G ++VK+ YK  ++    +S       S+ ES     W KLWKL 
Sbjct: 1223 HVEMEDVLAWHFDARGCFTVKSAYKVQREMERRASRNGCPGVSNWESGDDDFWKKLWKLG 1282

Query: 121  VPLKIRHFIWRALKNILPTRTNLQQKGIEIVPFC 147
            VP KI+HF+WR   N L  R NLQ +G+++   C
Sbjct: 1283 VPGKIKHFLWRMCHNTLALRANLQHRGMDVDTRC 1316

[Close]
BLAST of Cla97C06G115880 vs. NCBI nr
Match: EEE54600.1 (hypothetical protein OsJ_01823 [Oryza sativa Japonica Group])

HSP 1 Score: 105.5 bits (262), Expect = 1.7e-19
Identity = 58/154 (37.66%), Postives = 84/154 (54.55%), Query Frame = 0 

Query: 1   MFKDPWLPKECTPKSRCSNMDFIEARVADFITP-EGAWNTDLLTIATSPEDTAVIKKIPP 60
           ++ DPW+P+  + K        +  +V + I P  G W+ DLL+     ED A IK IP 
Sbjct: 130 IWADPWIPRGWSRKPMTPRGANLVTKVEELIDPYTGTWDEDLLSQTFWEEDVAAIKSIPV 189

Query: 61  NLRMEDKLIWHYDKYGKYSVKAGYKWFQKSRFWSS-------SSSESLFKVLWSKLWKLN 120
           ++ MED L WH+D  G ++VK+ YK  ++    +S       S+ ES     W KLWKL 
Sbjct: 190 HVEMEDVLAWHFDARGCFTVKSAYKVQREMERRASRNGCPGVSNWESGDDDFWKKLWKLG 249

Query: 121 VPLKIRHFIWRALKNILPTRTNLQQKGIEIVPFC 147
           VP KI+HF+WR   N L  R NLQ +G+++   C
Sbjct: 250 VPGKIKHFLWRMCHNTLALRANLQHRGMDVDTRC 283

[Close]
BLAST of Cla97C06G115880 vs. TrEMBL
Match: tr|A3BM56|A3BM56_ORYSJ (Uncharacterized protein OS=Oryza sativa subsp. japonica OX=39947 GN=OsJ_25114 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.5e-21
Identity = 57/154 (37.01%), Postives = 91/154 (59.09%), Query Frame = 0 

Query: 1   MFKDPWLPKECTPKSRCSNMDFIEARVADFITPE-GAWNTDLLTIATSPEDTAVIKKIPP 60
           ++ DPW+P + T +        +  RV + I P  G+W+ +LLT    PED  +I+ IP 
Sbjct: 172 IWSDPWIPSDHTRRPITPRGRNLVTRVEELIDPSTGSWDVELLTQTFWPEDVNMIRTIPV 231

Query: 61  NLRMEDKLIWHYDKYGKYSVKAGYK-----WFQKSRFWSS--SSSESLFKVLWSKLWKLN 120
           ++ M+D L WHYD+ G +SVK+ YK       Q+ +  S+  S+  +  ++ W K+WK+ 
Sbjct: 232 HIEMDDMLAWHYDEKGLFSVKSAYKVQRDGELQRRKRGSAGLSNGSTEREMYWKKVWKMQ 291

Query: 121 VPLKIRHFIWRALKNILPTRTNLQQKGIEIVPFC 147
           +P K++HFIWR   NIL  R NLQQ+G+++   C
Sbjct: 292 LPGKVKHFIWRFSHNILALRVNLQQRGMDLDSRC 325

[Close]
BLAST of Cla97C06G115880 vs. TrEMBL
Match: tr|Q0D4Q0|Q0D4Q0_ORYSJ (Os07g0613900 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0613900 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.5e-21
Identity = 57/154 (37.01%), Postives = 91/154 (59.09%), Query Frame = 0 

Query: 1    MFKDPWLPKECTPKSRCSNMDFIEARVADFITPE-GAWNTDLLTIATSPEDTAVIKKIPP 60
            ++ DPW+P + T +        +  RV + I P  G+W+ +LLT    PED  +I+ IP 
Sbjct: 1065 IWSDPWIPSDHTRRPITPRGRNLVTRVEELIDPSTGSWDVELLTQTFWPEDVNMIRTIPV 1124

Query: 61   NLRMEDKLIWHYDKYGKYSVKAGYK-----WFQKSRFWSS--SSSESLFKVLWSKLWKLN 120
            ++ M+D L WHYD+ G +SVK+ YK       Q+ +  S+  S+  +  ++ W K+WK+ 
Sbjct: 1125 HIEMDDMLAWHYDEKGLFSVKSAYKVQRDGELQRRKRGSAGLSNGSTEREMYWKKVWKMQ 1184

Query: 121  VPLKIRHFIWRALKNILPTRTNLQQKGIEIVPFC 147
            +P K++HFIWR   NIL  R NLQQ+G+++   C
Sbjct: 1185 LPGKVKHFIWRFSHNILALRVNLQQRGMDLDSRC 1218

[Close]
BLAST of Cla97C06G115880 vs. TrEMBL
Match: tr|B9G5C7|B9G5C7_ORYSJ (Uncharacterized protein OS=Oryza sativa subsp. japonica OX=39947 GN=OsJ_31232 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.1e-19
Identity = 58/154 (37.66%), Postives = 84/154 (54.55%), Query Frame = 0 

Query: 1    MFKDPWLPKECTPKSRCSNMDFIEARVADFITP-EGAWNTDLLTIATSPEDTAVIKKIPP 60
            ++ DPW+P+  + K        +  +V + I P  G W+ DLL+     ED A IK IP 
Sbjct: 1163 IWADPWIPRGWSRKPMTPRGANLVTKVEELIDPYTGTWDEDLLSQTFWEEDVAAIKSIPV 1222

Query: 61   NLRMEDKLIWHYDKYGKYSVKAGYKWFQKSRFWSS-------SSSESLFKVLWSKLWKLN 120
            ++ MED L WH+D  G ++VK+ YK  ++    +S       S+ ES     W KLWKL 
Sbjct: 1223 HVEMEDVLAWHFDARGCFTVKSAYKVQREMERRASRNGCPGVSNWESGDDDFWKKLWKLG 1282

Query: 121  VPLKIRHFIWRALKNILPTRTNLQQKGIEIVPFC 147
            VP KI+HF+WR   N L  R NLQ +G+++   C
Sbjct: 1283 VPGKIKHFLWRMCHNTLALRANLQHRGMDVDTRC 1316

[Close]
BLAST of Cla97C06G115880 vs. TrEMBL
Match: tr|B9EWU4|B9EWU4_ORYSJ (Uncharacterized protein OS=Oryza sativa subsp. japonica OX=39947 GN=OsJ_01823 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.1e-19
Identity = 58/154 (37.66%), Postives = 84/154 (54.55%), Query Frame = 0 

Query: 1   MFKDPWLPKECTPKSRCSNMDFIEARVADFITP-EGAWNTDLLTIATSPEDTAVIKKIPP 60
           ++ DPW+P+  + K        +  +V + I P  G W+ DLL+     ED A IK IP 
Sbjct: 130 IWADPWIPRGWSRKPMTPRGANLVTKVEELIDPYTGTWDEDLLSQTFWEEDVAAIKSIPV 189

Query: 61  NLRMEDKLIWHYDKYGKYSVKAGYKWFQKSRFWSS-------SSSESLFKVLWSKLWKLN 120
           ++ MED L WH+D  G ++VK+ YK  ++    +S       S+ ES     W KLWKL 
Sbjct: 190 HVEMEDVLAWHFDARGCFTVKSAYKVQREMERRASRNGCPGVSNWESGDDDFWKKLWKLG 249

Query: 121 VPLKIRHFIWRALKNILPTRTNLQQKGIEIVPFC 147
           VP KI+HF+WR   N L  R NLQ +G+++   C
Sbjct: 250 VPGKIKHFLWRMCHNTLALRANLQHRGMDVDTRC 283

[Close]
BLAST of Cla97C06G115880 vs. TrEMBL
Match: tr|B8B800|B8B800_ORYSI (Uncharacterized protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_25211 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 4.2e-19
Identity = 57/154 (37.01%), Postives = 83/154 (53.90%), Query Frame = 0 

Query: 1   MFKDPWLPKECTPKSRCSNMDFIEARVADFITP-EGAWNTDLLTIATSPEDTAVIKKIPP 60
           ++ DPW+P+  + K        +  +V + I P  G W+ DLL+     ED A IK IP 
Sbjct: 130 IWADPWIPRGWSRKPMTPRGANLVTKVEELIDPYTGTWDEDLLSQTFWEEDVAAIKSIPV 189

Query: 61  NLRMEDKLIWHYDKYGKYSVKAGYKWFQKSRFWSS-------SSSESLFKVLWSKLWKLN 120
           ++ MED L WH+D  G ++VK+ YK  ++    +S       S+ ES     W KLWKL 
Sbjct: 190 HVEMEDVLAWHFDARGCFTVKSAYKVQREMERRASRNGCPGVSNWESGDDDFWKKLWKLG 249

Query: 121 VPLKIRHFIWRALKNILPTRTNLQQKGIEIVPFC 147
           VP KI+HF+WR   N L  R NL  +G+++   C
Sbjct: 250 VPGKIKHFLWRMCHNTLALRANLHHRGMDVDTRC 283

[Close]
BLAST of Cla97C06G115880 vs. TAIR10
Match: AT3G09510.1 (Ribonuclease H-like superfamily protein)

HSP 1 Score: 55.8 bits (133), Expect = 2.7e-08
Identity = 30/86 (34.88%), Postives = 48/86 (55.81%), Query Frame = 0 

Query: 65  DKLIWHYDKYGKYSVKAGYKWF---QKSRFWSSSSSESLFKVLWSKLWKLNVPLKIRHFI 124
           DK+IW+Y+  G+Y+V++GY W      S    + +       L +++W L +  K++HF+
Sbjct: 117 DKIIWNYNTTGEYTVRSGY-WLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFL 176

Query: 125 WRALKNILPTRTNLQQKGIEIVPFCP 148
           WRAL   L T   L  +G+ I P CP
Sbjct: 177 WRALSQALATTERLTTRGMRIDPSCP 201

[Close]
BLAST of Cla97C06G115880 vs. TAIR10
Match: AT2G02650.1 (Ribonuclease H-like superfamily protein)

HSP 1 Score: 44.7 bits (104), Expect = 6.3e-05
Identity = 17/39 (43.59%), Postives = 25/39 (64.10%), Query Frame = 0 

Query: 108 LWKLNVPLKIRHFIWRALKNILPTRTNLQQKGIEIVPFC 147
           +WKL+V  KI+HF+WR +   L T T L+ + I+  P C
Sbjct: 37  IWKLHVAPKIKHFLWRCVTGALATNTRLRSRNIDADPIC 75

[Close]
BLAST of Cla97C06G115880 vs. TAIR10
Match: AT3G26855.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein)

HSP 1 Score: 41.6 bits (96), Expect = 5.3e-04
Identity = 17/39 (43.59%), Postives = 22/39 (56.41%), Query Frame = 0 

Query: 108 LWKLNVPLKIRHFIWRALKNILPTRTNLQQKGIEIVPFC 147
           +W L +  KI+  IW+AL N LP    L  + I I PFC
Sbjct: 9   IWSLKISPKIKLLIWKALNNALPVGAQLLSRNISIEPFC 47

[Close]
BLAST of Cla97C06G115880 vs. TAIR10
Match: AT3G25270.1 (Ribonuclease H-like superfamily protein)

HSP 1 Score: 41.2 bits (95), Expect = 7.0e-04
Identity = 17/41 (41.46%), Postives = 25/41 (60.98%), Query Frame = 0 

Query: 106 SKLWKLNVPLKIRHFIWRALKNILPTRTNLQQKGIEIVPFC 147
           +K+WKL    KI+HF+W+ L   L T  NL+++ I   P C
Sbjct: 16  AKIWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQC 56

The following BLAST results are available for this feature:
BLAST of Cla97C06G115880 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022158377.12.1e-2237.25uncharacterized protein LOC111024874 [Momordica charantia][more]
BAF22173.12.3e-2137.01Os07g0613900 [Oryza sativa Japonica Group][more]
EAZ40645.12.3e-2137.01hypothetical protein OsJ_25114 [Oryza sativa Japonica Group][more]
EEE50824.11.7e-1937.66hypothetical protein OsJ_31232 [Oryza sativa Japonica Group][more]
EEE54600.11.7e-1937.66hypothetical protein OsJ_01823 [Oryza sativa Japonica Group][more]
BLAST of Cla97C06G115880 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A3BM56|A3BM56_ORYSJ1.5e-2137.01Uncharacterized protein OS=Oryza sativa subsp. japonica OX=39947 GN=OsJ_25114 PE... [more]
tr|Q0D4Q0|Q0D4Q0_ORYSJ1.5e-2137.01Os07g0613900 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0613900 PE... [more]
tr|B9G5C7|B9G5C7_ORYSJ1.1e-1937.66Uncharacterized protein OS=Oryza sativa subsp. japonica OX=39947 GN=OsJ_31232 PE... [more]
tr|B9EWU4|B9EWU4_ORYSJ1.1e-1937.66Uncharacterized protein OS=Oryza sativa subsp. japonica OX=39947 GN=OsJ_01823 PE... [more]
tr|B8B800|B8B800_ORYSI4.2e-1937.01Uncharacterized protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_25211 PE=4... [more]
BLAST of Cla97C06G115880 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C06G115880 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G09510.12.7e-0834.88Ribonuclease H-like superfamily protein[more]
AT2G02650.16.3e-0543.59Ribonuclease H-like superfamily protein[more]
AT3G26855.15.3e-0443.59RNA-directed DNA polymerase (reverse transcriptase)-related family protein[more]
AT3G25270.17.0e-0441.46Ribonuclease H-like superfamily protein[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR026960RVT-Znf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003964 RNA-directed DNA polymerase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C06G115880.1Cla97C06G115880.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026960Reverse transcriptase zinc-binding domainPFAMPF13966zf-RVTcoord: 77..147
e-value: 9.2E-11
score: 42.2

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C06G115880Watermelon (97103) v2wmbwmbB137
Cla97C06G115880Watermelon (97103) v2wmbwmbB156
Cla97C06G115880Watermelon (97103) v2wmbwmbB158
Cla97C06G115880Silver-seed gourdcarwmbB0115
Cla97C06G115880Silver-seed gourdcarwmbB0230
Cla97C06G115880Silver-seed gourdcarwmbB0334
Cla97C06G115880Silver-seed gourdcarwmbB0884
Cla97C06G115880Silver-seed gourdcarwmbB1009
Cla97C06G115880Cucumber (Gy14) v2cgybwmbB140
Cla97C06G115880Cucumber (Gy14) v2cgybwmbB222
Cla97C06G115880Cucumber (Gy14) v2cgybwmbB520
Cla97C06G115880Cucumber (Gy14) v1cgywmbB453
Cla97C06G115880Cucurbita maxima (Rimu)cmawmbB266
Cla97C06G115880Cucurbita maxima (Rimu)cmawmbB373
Cla97C06G115880Cucurbita maxima (Rimu)cmawmbB377
Cla97C06G115880Cucurbita maxima (Rimu)cmawmbB653
Cla97C06G115880Cucurbita maxima (Rimu)cmawmbB865
Cla97C06G115880Cucurbita maxima (Rimu)cmawmbB921
Cla97C06G115880Cucurbita moschata (Rifu)cmowmbB246
Cla97C06G115880Cucurbita moschata (Rifu)cmowmbB358
Cla97C06G115880Cucurbita moschata (Rifu)cmowmbB361
Cla97C06G115880Cucurbita moschata (Rifu)cmowmbB837
Cla97C06G115880Cucurbita moschata (Rifu)cmowmbB896
Cla97C06G115880Cucurbita moschata (Rifu)cmowmbB901
Cla97C06G115880Wild cucumber (PI 183967)cpiwmbB149
Cla97C06G115880Wild cucumber (PI 183967)cpiwmbB239
Cla97C06G115880Wild cucumber (PI 183967)cpiwmbB573
Cla97C06G115880Cucumber (Chinese Long) v3cucwmbB147
Cla97C06G115880Cucumber (Chinese Long) v3cucwmbB233
Cla97C06G115880Cucumber (Chinese Long) v3cucwmbB570
Cla97C06G115880Cucumber (Chinese Long) v2cuwmbB146
Cla97C06G115880Cucumber (Chinese Long) v2cuwmbB231
Cla97C06G115880Cucumber (Chinese Long) v2cuwmbB547
Cla97C06G115880Bottle gourd (USVL1VR-Ls)lsiwmbB026
Cla97C06G115880Bottle gourd (USVL1VR-Ls)lsiwmbB196
Cla97C06G115880Bottle gourd (USVL1VR-Ls)lsiwmbB341
Cla97C06G115880Bottle gourd (USVL1VR-Ls)lsiwmbB342
Cla97C06G115880Melon (DHL92) v3.6.1medwmbB379
Cla97C06G115880Melon (DHL92) v3.6.1medwmbB442
Cla97C06G115880Melon (DHL92) v3.5.1mewmbB200
Cla97C06G115880Melon (DHL92) v3.5.1mewmbB389
Cla97C06G115880Melon (DHL92) v3.5.1mewmbB448
Cla97C06G115880Watermelon (Charleston Gray)wcgwmbB023
Cla97C06G115880Watermelon (Charleston Gray)wcgwmbB237
Cla97C06G115880Watermelon (Charleston Gray)wcgwmbB273
Cla97C06G115880Watermelon (Charleston Gray)wcgwmbB305
Cla97C06G115880Watermelon (97103) v1wmwmbB028
Cla97C06G115880Watermelon (97103) v1wmwmbB165
Cla97C06G115880Watermelon (97103) v1wmwmbB217
Cla97C06G115880Watermelon (97103) v1wmwmbB406
Cla97C06G115880Wax gourdwgowmbB095
Cla97C06G115880Wax gourdwgowmbB203
Cla97C06G115880Wax gourdwgowmbB259
Cla97C06G115880Wax gourdwgowmbB587