Cla97C06G113850 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C06G113850
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	30S ribosomal protein S6
Location	Cla97Chr06 : 4790383 .. 4791081 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGAAAGAGTAATTCGACATCTCGTGATTAAGAGGGATGCTGCTATCACCGAAGATTGCCCTCCCCCTCCTGAGTTTCACACGCTTCGTGCAGGAGTAGATGATGATGACAGTGAAGAAGATGACATGGATGATTATGATAGTGAGGATGAAATGGATTGGGATGGTGAGGATGAGTTGGATGATTATGGTGATGAGTTTGAAGATGGGATCATCATTGTTGACAGTGACAACGATGATGATGACAACAAAAGTAAGGCCACCAAATCAGCTGCCAGCAACAAAGGCTTGAGAAATAGAACTCAAAAATAAATCGACAGCCTCGATTTTGGCAGTAGAAGTTGAGGTGAGTTTCATGCCATATCTGCATTGGCTTCGGAGTGGGCTGTGAAGGCACTGAGCTAATTCTACGAATCTGTGGTGGAGTTTTGCTTCATTTCAGGTATTAAGTTACTGAAACTGCCATTATTTTCTCTGAATTATGTGCCCTCTCACAGTTAAAAGCTTGGAGGTTTTAGGTCATGTCAACGAACCATGTGACGATTTTGAAGTCGTTTTCATCACCAACGTTTCTCCACAGGAGCCAGGGTACTTAATGTCCATTTACTCTTTATATTGATGTCGAACTCATGTCAAATTCTAACGGGAACATGATGGAGGGTCTATACTTCGGATTGGTTTTTAGAGTTAGACTGA

mRNA sequence

ATGGATGAAAGAGTAATTCGACATCTCGTGATTAAGAGGGATGCTGCTATCACCGAAGATTGCCCTCCCCCTCCTGAGTTTCACACGCTTCGTGCAGGAGTAGATGATGATGACAGTGAAGAAGATGACATGGATGATTATGATAGTGAGGATGAAATGGATTGGGATGGTGAGGATGAGTTGGATGATTATGGTGATGAGTTTGAAGATGGGATCATCATTGTTGACAGTGACAACGATGATGATGACAACAAAAAGTTAGACTGA

Coding sequence (CDS)

ATGGATGAAAGAGTAATTCGACATCTCGTGATTAAGAGGGATGCTGCTATCACCGAAGATTGCCCTCCCCCTCCTGAGTTTCACACGCTTCGTGCAGGAGTAGATGATGATGACAGTGAAGAAGATGACATGGATGATTATGATAGTGAGGATGAAATGGATTGGGATGGTGAGGATGAGTTGGATGATTATGGTGATGAGTTTGAAGATGGGATCATCATTGTTGACAGTGACAACGATGATGATGACAACAAAAAGTTAGACTGA

Protein sequence

MDERVIRHLVIKRDAAITEDCPPPPEFHTLRAGVDDDDSEEDDMDDYDSEDEMDWDGEDELDDYGDEFEDGIIIVDSDNDDDDNKKLD

Homology

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BLAST of Cla97C06G113850 vs. NCBI nr
Match: XP_010270838.1 (PREDICTED: uncharacterized protein LOC104607049 [Nelumbo nucifera])

HSP 1 Score: 79.3 bits (194), Expect = 7.1e-12
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 2   DERVIRHLVIKRDAAITEDCPPPPEFHTLRAGVDDDDSEED 43
           DERVIRHLVIKRD AITEDCPPPPEFHTLRAG+DDD+ E D
Sbjct: 213 DERVIRHLVIKRDKAITEDCPPPPEFHTLRAGMDDDEIEMD 253

[Close]

BLAST of Cla97C06G113850 vs. NCBI nr
Match: XP_018847245.1 (PREDICTED: glutamic acid-rich protein [Juglans regia])

HSP 1 Score: 79.0 bits (193), Expect = 9.2e-12
Identity = 36/41 (87.80%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 2   DERVIRHLVIKRDAAITEDCPPPPEFHTLRAGVDDDDSEED 43
           DERVIRHLVIKRD AITEDCPPPPEFHTLRAG DD D EE+
Sbjct: 216 DERVIRHLVIKRDEAITEDCPPPPEFHTLRAGTDDYDEEEE 256

[Close]

BLAST of Cla97C06G113850 vs. NCBI nr
Match: XP_022138319.1 (putative vacuolar protein sorting-associated protein 13F [Momordica charantia])

HSP 1 Score: 79.0 bits (193), Expect = 9.2e-12
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 0


Query: 1   MDERVIRHLVIKRDAAITEDCPPPPEFHTLRAGVDD 37
           MDER+IRHLVIKRDAAITEDCPPPPEFHTLRAGVDD
Sbjct: 217 MDERIIRHLVIKRDAAITEDCPPPPEFHTLRAGVDD 252

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BLAST of Cla97C06G113850 vs. NCBI nr
Match: EOY06795.1 (Translation elongation factor EF1B/ribosomal protein S6 family protein [Theobroma cacao])

HSP 1 Score: 77.4 bits (189), Expect = 2.7e-11
Identity = 36/41 (87.80%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 2   DERVIRHLVIKRDAAITEDCPPPPEFHTLRAGVDDDDSEED 43
           DERVIRHLVIKRD AITEDCPPPPE+HTLRAG DD D EED
Sbjct: 301 DERVIRHLVIKRDEAITEDCPPPPEWHTLRAGGDDYDEEED 341

[Close]

BLAST of Cla97C06G113850 vs. NCBI nr
Match: XP_007035869.2 (PREDICTED: uncharacterized protein LOC18603701 [Theobroma cacao])

HSP 1 Score: 77.4 bits (189), Expect = 2.7e-11
Identity = 36/41 (87.80%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 2   DERVIRHLVIKRDAAITEDCPPPPEFHTLRAGVDDDDSEED 43
           DERVIRHLVIKRD AITEDCPPPPE+HTLRAG DD D EED
Sbjct: 301 DERVIRHLVIKRDEAITEDCPPPPEWHTLRAGGDDYDEEED 341

[Close]

BLAST of Cla97C06G113850 vs. TrEMBL
Match: tr|A0A1U8B4X4|A0A1U8B4X4_NELNU (uncharacterized protein LOC104607049 OS=Nelumbo nucifera OX=4432 GN=LOC104607049 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.7e-12
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 2   DERVIRHLVIKRDAAITEDCPPPPEFHTLRAGVDDDDSEED 43
           DERVIRHLVIKRD AITEDCPPPPEFHTLRAG+DDD+ E D
Sbjct: 213 DERVIRHLVIKRDKAITEDCPPPPEFHTLRAGMDDDEIEMD 253

[Close]

BLAST of Cla97C06G113850 vs. TrEMBL
Match: tr|A0A2I4GTM0|A0A2I4GTM0_9ROSI (glutamic acid-rich protein OS=Juglans regia OX=51240 GN=LOC109010786 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 6.1e-12
Identity = 36/41 (87.80%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 2   DERVIRHLVIKRDAAITEDCPPPPEFHTLRAGVDDDDSEED 43
           DERVIRHLVIKRD AITEDCPPPPEFHTLRAG DD D EE+
Sbjct: 216 DERVIRHLVIKRDEAITEDCPPPPEFHTLRAGTDDYDEEEE 256

[Close]

BLAST of Cla97C06G113850 vs. TrEMBL
Match: tr|A0A061EP44|A0A061EP44_THECC (Translation elongation factor EF1B/ribosomal protein S6 family protein OS=Theobroma cacao OX=3641 GN=TCM_021419 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.8e-11
Identity = 36/41 (87.80%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 2   DERVIRHLVIKRDAAITEDCPPPPEFHTLRAGVDDDDSEED 43
           DERVIRHLVIKRD AITEDCPPPPE+HTLRAG DD D EED
Sbjct: 301 DERVIRHLVIKRDEAITEDCPPPPEWHTLRAGGDDYDEEED 341

[Close]

BLAST of Cla97C06G113850 vs. TrEMBL
Match: tr|D7SYH9|D7SYH9_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_05s0077g00590 PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-10
Identity = 34/37 (91.89%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 2   DERVIRHLVIKRDAAITEDCPPPPEFHTLRAGVDDDD 39
           DERVIRHLVIKRD AITEDCPPPPEFHTLRAG DD D
Sbjct: 207 DERVIRHLVIKRDEAITEDCPPPPEFHTLRAGTDDYD 243

[Close]

BLAST of Cla97C06G113850 vs. TrEMBL
Match: tr|V7BQT6|V7BQT6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_006G120200g PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-10
Identity = 34/40 (85.00%), Postives = 35/40 (87.50%), Query Frame = 0


Query: 2   DERVIRHLVIKRDAAITEDCPPPPEFHTLRAGVDDDDSEE 42
           DERVIRHLVIKRD AITEDCPPPPEFHTLRA  DD + EE
Sbjct: 222 DERVIRHLVIKRDEAITEDCPPPPEFHTLRANADDIEDEE 261

[Close]

BLAST of Cla97C06G113850 vs. TAIR10
Match: AT3G17170.1 (Translation elongation factor EF1B/ribosomal protein S6 family protein)

HSP 1 Score: 66.2 bits (160), Expect = 1.1e-11
Identity = 28/32 (87.50%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 2   DERVIRHLVIKRDAAITEDCPPPPEFHTLRAG 34
           DERVIRHLV+KRD AITEDCPPPPEFH++RAG
Sbjct: 200 DERVIRHLVMKRDEAITEDCPPPPEFHSVRAG 231

The following BLAST results are available for this feature:

BLAST of Cla97C06G113850 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_010270838.1	7.1e-12	87.80	PREDICTED: uncharacterized protein LOC104607049 [Nelumbo nucifera]	[more]
XP_018847245.1	9.2e-12	87.80	PREDICTED: glutamic acid-rich protein [Juglans regia]	[more]
XP_022138319.1	9.2e-12	97.22	putative vacuolar protein sorting-associated protein 13F [Momordica charantia]	[more]
EOY06795.1	2.7e-11	87.80	Translation elongation factor EF1B/ribosomal protein S6 family protein [Theobrom...	[more]
XP_007035869.2	2.7e-11	87.80	PREDICTED: uncharacterized protein LOC18603701 [Theobroma cacao]	[more]

BLAST of Cla97C06G113850 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1U8B4X4\|A0A1U8B4X4_NELNU	4.7e-12	87.80	uncharacterized protein LOC104607049 OS=Nelumbo nucifera OX=4432 GN=LOC104607049...	[more]
tr\|A0A2I4GTM0\|A0A2I4GTM0_9ROSI	6.1e-12	87.80	glutamic acid-rich protein OS=Juglans regia OX=51240 GN=LOC109010786 PE=3 SV=1	[more]
tr\|A0A061EP44\|A0A061EP44_THECC	1.8e-11	87.80	Translation elongation factor EF1B/ribosomal protein S6 family protein OS=Theobr...	[more]
tr\|D7SYH9\|D7SYH9_VITVI	1.1e-10	91.89	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_05s0077g00590 PE=3 SV=...	[more]
tr\|V7BQT6\|V7BQT6_PHAVU	1.1e-10	85.00	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_006G120200g PE=3 ...	[more]

BLAST of Cla97C06G113850 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C06G113850 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G17170.1	1.1e-11	87.50	Translation elongation factor EF1B/ribosomal protein S6 family protein	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome
GO:0019843	rRNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR000529	Ribosomal_S6

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C06G113850.1	Cla97C06G113850.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..64
None	No IPR available	PANTHER	PTHR21011:SF4	SUBFAMILY NOT NAMED	coord: 2..80
IPR000529	Ribosomal protein S6	PANTHER	PTHR21011	MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6	coord: 2..80

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C06G113850	Watermelon (97103) v2	wmbwmbB055
Cla97C06G113850	Watermelon (97103) v2	wmbwmbB104
Cla97C06G113850	Watermelon (97103) v2	wmbwmbB137
Cla97C06G113850	Watermelon (97103) v2	wmbwmbB160
Cla97C06G113850	Silver-seed gourd	carwmbB0070
Cla97C06G113850	Silver-seed gourd	carwmbB0589
Cla97C06G113850	Silver-seed gourd	carwmbB0735
Cla97C06G113850	Cucumber (Gy14) v2	cgybwmbB146
Cla97C06G113850	Cucumber (Gy14) v2	cgybwmbB222
Cla97C06G113850	Cucumber (Gy14) v2	cgybwmbB449
Cla97C06G113850	Cucumber (Gy14) v1	cgywmbB102
Cla97C06G113850	Cucumber (Gy14) v1	cgywmbB436
Cla97C06G113850	Cucumber (Gy14) v1	cgywmbB453
Cla97C06G113850	Cucurbita maxima (Rimu)	cmawmbB270
Cla97C06G113850	Cucurbita maxima (Rimu)	cmawmbB377
Cla97C06G113850	Cucurbita maxima (Rimu)	cmawmbB825
Cla97C06G113850	Cucurbita maxima (Rimu)	cmawmbB865
Cla97C06G113850	Cucurbita maxima (Rimu)	cmawmbB921
Cla97C06G113850	Cucurbita moschata (Rifu)	cmowmbB250
Cla97C06G113850	Cucurbita moschata (Rifu)	cmowmbB361
Cla97C06G113850	Cucurbita moschata (Rifu)	cmowmbB797
Cla97C06G113850	Cucurbita moschata (Rifu)	cmowmbB838
Cla97C06G113850	Cucurbita moschata (Rifu)	cmowmbB896
Cla97C06G113850	Wild cucumber (PI 183967)	cpiwmbB154
Cla97C06G113850	Wild cucumber (PI 183967)	cpiwmbB239
Cla97C06G113850	Wild cucumber (PI 183967)	cpiwmbB498
Cla97C06G113850	Cucumber (Chinese Long) v3	cucwmbB097
Cla97C06G113850	Cucumber (Chinese Long) v3	cucwmbB153
Cla97C06G113850	Cucumber (Chinese Long) v3	cucwmbB233
Cla97C06G113850	Cucumber (Chinese Long) v3	cucwmbB490
Cla97C06G113850	Cucumber (Chinese Long) v2	cuwmbB152
Cla97C06G113850	Cucumber (Chinese Long) v2	cuwmbB231
Cla97C06G113850	Cucumber (Chinese Long) v2	cuwmbB471
Cla97C06G113850	Bottle gourd (USVL1VR-Ls)	lsiwmbB026
Cla97C06G113850	Bottle gourd (USVL1VR-Ls)	lsiwmbB099
Cla97C06G113850	Bottle gourd (USVL1VR-Ls)	lsiwmbB239
Cla97C06G113850	Melon (DHL92) v3.6.1	medwmbB118
Cla97C06G113850	Melon (DHL92) v3.6.1	medwmbB442
Cla97C06G113850	Melon (DHL92) v3.5.1	mewmbB128
Cla97C06G113850	Melon (DHL92) v3.5.1	mewmbB448
Cla97C06G113850	Watermelon (Charleston Gray)	wcgwmbB025
Cla97C06G113850	Watermelon (Charleston Gray)	wcgwmbB050
Cla97C06G113850	Watermelon (Charleston Gray)	wcgwmbB161
Cla97C06G113850	Watermelon (Charleston Gray)	wcgwmbB238
Cla97C06G113850	Watermelon (Charleston Gray)	wcgwmbB273
Cla97C06G113850	Watermelon (97103) v1	wmwmbB031
Cla97C06G113850	Watermelon (97103) v1	wmwmbB069
Cla97C06G113850	Watermelon (97103) v1	wmwmbB217
Cla97C06G113850	Watermelon (97103) v1	wmwmbB344
Cla97C06G113850	Watermelon (97103) v1	wmwmbB406
Cla97C06G113850	Wax gourd	wgowmbB042
Cla97C06G113850	Wax gourd	wgowmbB096
Cla97C06G113850	Wax gourd	wgowmbB203