Cla97C06G111800 (gene) Watermelon (97103) v2

Overview
NameCla97C06G111800
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionRNA binding protein, putative
LocationCla97Chr06 : 2601294 .. 2605687 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGACCACAAATCCATTTGATTTGTTGGGAGATGACGACGCCGAGGACCCATCGCAGCTAATTGCCGCCAAGCATGCCGTCGCGGCGGCGCCTAAGAAAGGTTCTGATCATCCTCAGGCCAAACAGGCGGCTGCGGCAGCTAAATTGAACAAACCTGCTAATCTTCCTTCCAAGCCTCTTCCACCTGCTCAGGCTGGTTAGTTTCTTCTCTTTTTAATTGGAAGTTAATGATTTTCTAAATATCAGCGTTTGATTTTGATGATTGATCGTGTTGTTCTTTTTGCTTCCCTGTCTGGGTTGATTGGTTTTGTTGTAGTTTTGTTCTAGCTGTTTGTCCGCTTGTTTGCATGGTTACGTTGTTTGGGCCTACGGAATTGTGCGAAGTCTCTCTTGGCGACGTTTTTTTTAATATATATATATATATATATATATATATATATATAGACACACGTAGGAGTGAGTGATTTTGAATTCAGTCAAAATGCTATAAGCTATAATTACTTTCTGCGATAGGGTTGTAGTAGGTAATAGCCGGCTGGGATGTAATGTGTATTCCACTATTCCCACAATCCAGGCCCTGCATTCCAGATTTATTTGCAATTCAGATAATATCCAATGACTTGTATGTTTGGAACATAAATGAAAGTAAATTATCAATACTTTGTTTTTGTTCTTTTTTTGTGGAAAATTTGAGTGTCAGCAATGGTGTTGTGATTTTTTAACGTACTAGTTCGTGAAATTTCTCTGTACACTGTTTAGTTAATTCTTTTCTTTTTTACTTATTATTCTATTTTCCTTTTGTCCATGGTAATCAAAAGAATTAGAATTATTTTGATAATTTAGGTACAAGTCTTTTATCAAGGAAGTGAGCTTTCATTGAGAAATATGAAAAAATGTACAAGGGCATACAAAAAACAAACCCTCCAAAAAGAGTCCCCAACCCCAATAATGAGTAAGGACCCAGACTAAGTTAGTAATCACAAAAAGCCTGATTAATGGATGTCCATAGTGGTGTTTGCTAGAACATTTAAACCTACAACTTGAAATACACTTAGAAGGCTGTGGTCTATACTTGCCCAGAATATCCTATGCTACATGAAGAAATGTCAACCATTTTGCTAAAATAGCCTCATTCCAGGTTGTCAATGCCTAAACCCTCCAGATCAACTAATTTCGACGCAACCTCCCCCACCCTTATCCACTCCTTCCCACAAGAATGGAGACCAACATACCAAGCATGGGAAGAAAGTAGATTGGGATCCAACTCAGCACTAATTGGATCAAAGTGCTTCCCCCTTAAAAAAAGGCCTTCTTCCGTGGTTTTGAATTTCTCTACCACAGGGTCCCGAAAAAGCAAACTATTTGGGATTTTACCTCCAAGGGAAGTCCAAGGTAGGAACAGGGAAGCTGACTCACCTCACAACCAACCAAATAAACCCAAGAGGACAACTTAGAAGGCTCACAATTTAACCAATGATGGAGCTTTTCTCTCTATTAATTTTAAGGCTTGAGATAGATTCAAAGAATGACAAGAAACCATTAATATTCGTGAAGGAATTATTCAATTGTTCTATATATATATTTTGATGAGATCCACTTGGTATAATTTATGCACAAGCTGAATTGCAATGTTTTGGTTGGTTCTTGATTTGTGATCTTTTGCATTATTTTGAAAGGTCGTTGTTTTCAATATTTACCTTGAAGAGGAATTGATGTATTAGATTTCTTCATATGATTTAGTGGTGGAAAATTCCATGTTTTCTAAAGAGGTCATGTTTTGGAGGAACAGCAAATATTTGCATGTATATTCAGATGGTGGGATGTTGTACAGAACTGGGTTGTCTTTTATTGCATTATTGTTTAATATTCCTGGTTCTTAATATAGAACTTGGAAGTCTGCAATCAATTTTTTATCCTATCTTAAGCGTAGCTTTGCCTTTTATCATATTGTCCATATTATGTTATAATTTATCAACAGCCTATTCCTTGTTCTATTGGGTTCTTATGAGTGTCCCACCCAATTGGTATGAAATATCCATTGGGTAACTGAAAGAGTGTTTTTTTTTTAATACTTTGAGTAGTAAGGGAAGCAAAGAATGAAGGTGGTCGTGGAGGTCGTGGTAGTGGGCGTGGTGGAGGTGGACGTGGATATTGGCGAGGGCGTGGCAGTGGTGGCTTCAATCGTGAGTCTTCCAATAATGAGCACTCATTTAGTAGTAACCCTGAAGATGGAGAGACTATAAGGACAACAGAAAGGCGTGGTGGATATGGTGGACCTCGTGGTCGTGGTGGCCGTCGTGGTGGTTTTAATAATGGAGATTCTGTTGATGGTGAACGCCCTCGTGGTGTATTTGAACGCCACAGTGGGACTGGCCGAGGGTGAGTGTTCATTTATTTAAAAAATTCAGTTTACACAATTCTTCTGTATCTTCTGCTTTGTTTTGATATTTTCAGCATATTTTATGCCTTAGAAATGAATTCAAGCGTGAAGGGTCTGGGCGTGGAAACTGGGGAAGGTCAACTGACGAATTTCCTGAGTAAGTACATGTCTACGTTTTGGATGCTTCTGTATGTGGTTTGGTTTTCCTTTTCTTTTTTCTCCTATAATGTTTGGCGCTGGGGTGGGGGGAGCTCAGGAGGCGGACATTACTGGAAGTTTTTATGCATGTTCAAATCTTGTATGCTGAGAGGCTAGTTTGTTTTGCATACAGGGTTACAGAGGAAGTTAATGAATCTGAGAAGAAGTTAGGTGATGAGAAGCCCGTTCATGAGGATGATACTGCAGGTGTCAACATCGAGAGCTCTGCAAAAGAATCAGAGGAAAAAGAACCAGAAGACAAGGTTTGTGTCGTCAGGTTTTTTGGTAGACTTCACTTAAACCTGCAGCCTACCATTTCACTCGTCATTGGTTTTTCTTGTTGACTGAAAAGTAATTTGTAGTTTGGCTTGCTTCTCAAACAAATTGTATGGCAGTAATAGCCGAAGTTGTAGTAATAGGCTTGTTGGGCTTTGATTATGAAGTTCACTCTATGTTCAACATGATCTTGAATCTACCTTGTACTCTTTCTTTTGCCCTGATGCAGGAAATGACTCTGGAGGAGTATGAAAAATTGCTGGAGGAGAAAAGGAAGAGCCTTCTGGCATTAAAAACTGAGGAGAGGAAGGTGGATCCTAAAGAGTTTGCATCCTTGCAACAGCTTTCAAGCAAAAAGGAAAACCAGGACGTCTTTATTAAATTGGTACACCATTTAATCTTCTTTTGGAGTTAAAATTATATATTGCTCTGATGACCCTTGGCTCCTTAGTATATTGGTCTATGGACTTGGACTTGGCCGCTTAATCTTCATTTGTTCCGTTTGTAGGGATCTGATAAGGATAAGCGAAAAGAAACTGCAGATAAGGAGGAGAGAACTAAGAAGGTATTCCCTCTTGTTTATTACTTGGTTTCTTGCCCACTACGTTGTTTTCTAAAGTTCCGTTCTTAACTGTGGGAAAATGTTCTGTTGTGATGCCTTTTACTGCGTCTATTTGTAACCAATTGAATGAAGAAATCAAAATGTGTTTACTTTGTATAATTTACTTGTATTACGTCTGACGCTCTCTCCTATTTGGAACAAAGCTTAAAAGAGAGAGAGGTTGGGGCATCGGTTCAACTTCTTAACTTAGGTTTTGTTAGTGAAGTTTGTGTTAGGAAAACTGGGTGTTGGGGGTTCGAATGGGTTACTATTCTCAAGCCAGTCGGGTTCTTCAGGAAAACTTGGGTTTGGCGATTCCGCCCCAATATGTGGGTTAGAAAGTCAAACTCACACCCCCGAATGCTTCAAAGGGTGCTTGGCCAAAGAGTTGGAGAGTAGGATTTGAGGGGAGGGGAGTTCACAATTCCACTCCTTGTTTGGCCAAGGAGTTTGGGAGTCTCACTACTATAAAAAGTCAATTTTATACCTTATTAACTCCTTACACTGTTTAAGAATTCACAACTCCACTCCTTGTCCTGAACGTCCCCCAAACATTTAAGAACCTGAGTTAAGAAATGTGTTTGTTTTTTAAGGTTTTTTGCACAACTTGGTTCTAATAAAACAATATTTCCGTTATTGTAACCTAAATTCTGTGCATACTAAATAGACCCATGTTTTCCATATCTTAGAAGAACTAGACCCTATGAGTTGTCAAAGTACTGATCTTTCTGTTGCTTTCTTCTGTTTTTGTAGTCTTTGACTATCAATGAGTTCTTGAAGCCAGCCGAAGGAGAGAGACACTTCACTCCAGGTGGTCGGGGTAGGGGCCGGGGCCGTGGTTCAAGGGGAGGTTTTGTTGGCAGCTCGGTGAGCAGCAATGTTGCAGCCCCGTCGATTGGGGATCCGGGGCAGTTCCCAACCTTAGGTGCGAAATGA

mRNA sequence

ATGGCGACCACAAATCCATTTGATTTGTTGGGAGATGACGACGCCGAGGACCCATCGCAGCTAATTGCCGCCAAGCATGCCGTCGCGGCGGCGCCTAAGAAAGGTTCTGATCATCCTCAGGCCAAACAGGCGGCTGCGGCAGCTAAATTGAACAAACCTGCTAATCTTCCTTCCAAGCCTCTTCCACCTGCTCAGGCTGTAAGGGAAGCAAAGAATGAAGGTGGTCGTGGAGGTCGTGGTAGTGGGCGTGGTGGAGGTGGACGTGGATATTGGCGAGGGCGTGGCAGTGGTGGCTTCAATCGTGAGTCTTCCAATAATGAGCACTCATTTAGTAGTAACCCTGAAGATGGAGAGACTATAAGGACAACAGAAAGGCGTGGTGGATATGGTGGACCTCGTGGTCGTGGTGGCCGTCGTGGTGGTTTTAATAATGGAGATTCTGTTGATGGTGAACGCCCTCGTGGTGTATTTGAACGCCACAGTGGGACTGGCCGAGGAAATGAATTCAAGCGTGAAGGGTCTGGGCGTGGAAACTGGGGAAGGTCAACTGACGAATTTCCTGAGGTTACAGAGGAAGTTAATGAATCTGAGAAGAAGTTAGGTGATGAGAAGCCCGTTCATGAGGATGATACTGCAGGTGTCAACATCGAGAGCTCTGCAAAAGAATCAGAGGAAAAAGAACCAGAAGACAAGGAAATGACTCTGGAGGAGTATGAAAAATTGCTGGAGGAGAAAAGGAAGAGCCTTCTGGCATTAAAAACTGAGGAGAGGAAGGTGGATCCTAAAGAGTTTGCATCCTTGCAACAGCTTTCAAGCAAAAAGGAAAACCAGGACGTCTTTATTAAATTGGGATCTGATAAGGATAAGCGAAAAGAAACTGCAGATAAGGAGGAGAGAACTAAGAAGTCTTTGACTATCAATGAGTTCTTGAAGCCAGCCGAAGGAGAGAGACACTTCACTCCAGGTGGTCGGGGTAGGGGCCGGGGCCGTGGTTCAAGGGGAGGTTTTGTTGGCAGCTCGGTGAGCAGCAATGTTGCAGCCCCGTCGATTGGGGATCCGGGGCAGTTCCCAACCTTAGGTGCGAAATGA

Coding sequence (CDS)

ATGGCGACCACAAATCCATTTGATTTGTTGGGAGATGACGACGCCGAGGACCCATCGCAGCTAATTGCCGCCAAGCATGCCGTCGCGGCGGCGCCTAAGAAAGGTTCTGATCATCCTCAGGCCAAACAGGCGGCTGCGGCAGCTAAATTGAACAAACCTGCTAATCTTCCTTCCAAGCCTCTTCCACCTGCTCAGGCTGTAAGGGAAGCAAAGAATGAAGGTGGTCGTGGAGGTCGTGGTAGTGGGCGTGGTGGAGGTGGACGTGGATATTGGCGAGGGCGTGGCAGTGGTGGCTTCAATCGTGAGTCTTCCAATAATGAGCACTCATTTAGTAGTAACCCTGAAGATGGAGAGACTATAAGGACAACAGAAAGGCGTGGTGGATATGGTGGACCTCGTGGTCGTGGTGGCCGTCGTGGTGGTTTTAATAATGGAGATTCTGTTGATGGTGAACGCCCTCGTGGTGTATTTGAACGCCACAGTGGGACTGGCCGAGGAAATGAATTCAAGCGTGAAGGGTCTGGGCGTGGAAACTGGGGAAGGTCAACTGACGAATTTCCTGAGGTTACAGAGGAAGTTAATGAATCTGAGAAGAAGTTAGGTGATGAGAAGCCCGTTCATGAGGATGATACTGCAGGTGTCAACATCGAGAGCTCTGCAAAAGAATCAGAGGAAAAAGAACCAGAAGACAAGGAAATGACTCTGGAGGAGTATGAAAAATTGCTGGAGGAGAAAAGGAAGAGCCTTCTGGCATTAAAAACTGAGGAGAGGAAGGTGGATCCTAAAGAGTTTGCATCCTTGCAACAGCTTTCAAGCAAAAAGGAAAACCAGGACGTCTTTATTAAATTGGGATCTGATAAGGATAAGCGAAAAGAAACTGCAGATAAGGAGGAGAGAACTAAGAAGTCTTTGACTATCAATGAGTTCTTGAAGCCAGCCGAAGGAGAGAGACACTTCACTCCAGGTGGTCGGGGTAGGGGCCGGGGCCGTGGTTCAAGGGGAGGTTTTGTTGGCAGCTCGGTGAGCAGCAATGTTGCAGCCCCGTCGATTGGGGATCCGGGGCAGTTCCCAACCTTAGGTGCGAAATGA

Protein sequence

MATTNPFDLLGDDDAEDPSQLIAAKHAVAAAPKKGSDHPQAKQAAAAAKLNKPANLPSKPLPPAQAVREAKNEGGRGGRGSGRGGGGRGYWRGRGSGGFNRESSNNEHSFSSNPEDGETIRTTERRGGYGGPRGRGGRRGGFNNGDSVDGERPRGVFERHSGTGRGNEFKREGSGRGNWGRSTDEFPEVTEEVNESEKKLGDEKPVHEDDTAGVNIESSAKESEEKEPEDKEMTLEEYEKLLEEKRKSLLALKTEERKVDPKEFASLQQLSSKKENQDVFIKLGSDKDKRKETADKEERTKKSLTINEFLKPAEGERHFTPGGRGRGRGRGSRGGFVGSSVSSNVAAPSIGDPGQFPTLGAK
Homology
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BLAST of Cla97C06G111800 vs. NCBI nr
Match: XP_022973886.1 (RGG repeats nuclear RNA binding protein A-like [Cucurbita maxima])

HSP 1 Score: 413.7 bits (1062), Expect = 6.5e-112
Identity = 279/368 (75.82%), Postives = 298/368 (80.98%), Query Frame = 0 

Query: 1   MATTNPFDLLGDDDAEDPSQLIAAKHAVAAAPKKGSDHPQAKQAAAAAKLNKPANLPSKP 60
           MATTNPFDLLGDDDAEDPSQLIAAKHA A   +K SDHPQ KQAAAAAK NKPANLPSKP
Sbjct: 1   MATTNPFDLLGDDDAEDPSQLIAAKHAAAVLSRKASDHPQGKQAAAAAKQNKPANLPSKP 60

Query: 61  LPPAQAVREAKNEGXXXXXXXXXXXXXXXXXXXXXXXXXXXESSNNEHSFSSNPEDGETI 120
           LPPAQAVREAKNEG  XXXXXXXXXXXXXXXXXXXX     E   N++SFSSNPEDGET 
Sbjct: 61  LPPAQAVREAKNEGGRXXXXXXXXXXXXXXXXXXXXGGFNREFPYNDYSFSSNPEDGETG 120

Query: 121 RTTERRGGYGGPRGRGGRRGGFNNGDSVDGERPRGVFERHSGTGRGNEFKREGSGRGNWG 180
           RTTE+RGGYGGPRGRGGRRGGF NG++ +GER RG FER SGTG GN+FKREGSGRGNWG
Sbjct: 121 RTTEKRGGYGGPRGRGGRRGGFTNGEASEGERFRGAFERQSGTGYGNDFKREGSGRGNWG 180

Query: 181 RSTDEFPEVTEEVNESEKKLGDEKPVHEDDTAGVNIESSAXXXXXXXXXXXXXXXXXXXX 240
           R T+EF E  EEVNE++KK+GDEKPVHEDD      ++SA                    
Sbjct: 181 RPTNEFSEGAEEVNETQKKVGDEKPVHEDD------QNSAKQLEEKEPEDKEMTLEEYEK 240

Query: 241 XXXXXXXSLLALKTEERKVDPKEFASLQQLSSKKENQDVFIKLGSDKDKRKETADKEERT 300
                  +LLALKTEERKVDPKEFAS+QQLSSKK+NQDVFIKLGSDKDKRKE ADKEERT
Sbjct: 241 LQEKKRKALLALKTEERKVDPKEFASMQQLSSKKDNQDVFIKLGSDKDKRKEIADKEERT 300

Query: 301 KKSLTINEFLKPAEGERHFTPGGRG------XXXXXXXXXXXXXXXXXXXXAAPSIGDPG 360
           KKSL+INEFLKPAEGERH+ PGGRG      XXXXXXXXXXXXXXXXXXXXAAPSI DPG
Sbjct: 301 KKSLSINEFLKPAEGERHYMPGGRGXXXXXXXXXXXXXXXXXXXXXXXXXXAAPSIEDPG 360

Query: 361 QFPTLGAK 363
           QFPTLGAK
Sbjct: 361 QFPTLGAK 362

[Close]
BLAST of Cla97C06G111800 vs. NCBI nr
Match: XP_004150996.1 (PREDICTED: cyclin-dependent kinase 13-like [Cucumis sativus] >KGN46514.1 hypothetical protein Csa_6G105680 [Cucumis sativus])

HSP 1 Score: 406.8 bits (1044), Expect = 7.9e-110
Identity = 293/364 (80.49%), Postives = 306/364 (84.07%), Query Frame = 0 

Query: 1   MATTNPFDLLGDDDAEDPSQLIAAKHAVAAAPKKGSDHPQAK-QAAAAAKLNKPANLPSK 60
           MATTNPFDLLGDDDAEDPSQL+A K A AAAPKKGSDHPQAK       KL+KPANLPSK
Sbjct: 1   MATTNPFDLLGDDDAEDPSQLMAVKQA-AAAPKKGSDHPQAKXXXXXXXKLSKPANLPSK 60

Query: 61  PLPPAQAVREAKNEGXXXXXXXXXXXXXXXXXXXXXXXXXXXESSNNEHSFSSNPEDGET 120
           PLPPAQAVREAKNEG      XXXXXXXXXXXXXXXXXXXXXES NNE+SFSSNPEDGET
Sbjct: 61  PLPPAQAVREAKNEG--GRGGXXXXXXXXXXXXXXXXXXXXXESPNNEYSFSSNPEDGET 120

Query: 121 IRTTERRGGYGGPRGRGGRRGGFNNGDSVDGERPRGVFERHSGTGRGNEFKREGSGRGNW 180
            RTTE+RGGY           GF NGD+ DGERPRG FERHSGTGRGNEFKREGSGRGNW
Sbjct: 121 GRTTEKRGGYXXXXXXXXXXXGFYNGDTADGERPRGAFERHSGTGRGNEFKREGSGRGNW 180

Query: 181 GRSTDEFPEVTEEVNESEKKLGDEKPVHEDDTAGVNIESSAXXXXXXXXXXXXXXXXXXX 240
           GRS +EFPEV EE NES+ KLGDEKPVHEDDTAGVN E+ AXXXXXXXXXXXXXXXXXXX
Sbjct: 181 GRSAEEFPEVAEEANESQ-KLGDEKPVHEDDTAGVNTENPAXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXSLLALKTEERKVDPKEFASLQQLSSKKENQDVFIKLGSDKDKRKETADKEER 300
           X       SLLALKTEERKVDPKEFASLQQLSSKKENQD+FIKLGSDKDKRKETADKEER
Sbjct: 241 XLLDEKRKSLLALKTEERKVDPKEFASLQQLSSKKENQDIFIKLGSDKDKRKETADKEER 300

Query: 301 TKKSLTINEFLKPAEGERHFTPGGR-GXXXXXXXXXXXXXXXXXXXXAAPSIGDPGQFPT 360
           TKKS++INEFLKPAEGE+H+TPGGR  XXXXXXXXXX          AAPSI DPGQFPT
Sbjct: 301 TKKSVSINEFLKPAEGEKHYTPGGRXXXXXXXXXXXXYVGSSMSSNVAAPSIEDPGQFPT 360

Query: 361 LGAK 363
           LGAK
Sbjct: 361 LGAK 360

[Close]
BLAST of Cla97C06G111800 vs. NCBI nr
Match: XP_008459800.1 (PREDICTED: H/ACA ribonucleoprotein complex subunit 1-like [Cucumis melo])

HSP 1 Score: 401.0 bits (1029), Expect = 4.4e-108
Identity = 299/365 (81.92%), Postives = 312/365 (85.48%), Query Frame = 0 

Query: 1   MATTNPFDLLGDDDAEDPSQLIAAKHAVAA-APKKGSDHPQAK-QAAAAAKLNKPANLPS 60
           MATTNPFDLLGDDDAEDPSQL+A K A AA APKKGSDHPQAK      AKLNKPANLPS
Sbjct: 1   MATTNPFDLLGDDDAEDPSQLMAVKQAAAAVAPKKGSDHPQAKXXXXXXAKLNKPANLPS 60

Query: 61  KPLPPAQAVREAKNEGXXXXXXXXXXXXXXXXXXXXXXXXXXXESSNNEHSFSSNPEDGE 120
           KPLPPAQAVREAKNEG  XXXXXXXXXXXXXXXXXXXXXXXXXE++NNE+SFSSNPEDGE
Sbjct: 61  KPLPPAQAVREAKNEGGRXXXXXXXXXXXXXXXXXXXXXXXXXEAANNEYSFSSNPEDGE 120

Query: 121 TIRTTERRGGYGGPRGRGGRRGGFNNGDSVDGERPRGVFERHSGTGRGNEFKREGSGRGN 180
           T RTTE+R                 NGD+ DGERPRGVFERHSGTGRGNEFKREGSGRGN
Sbjct: 121 TGRTTEKRXXXXXXXXXXXXXXXXXNGDTDDGERPRGVFERHSGTGRGNEFKREGSGRGN 180

Query: 181 WGRSTDEFPEVTEEVNESEKKLGDEKPVHEDDTAGVNIESSAXXXXXXXXXXXXXXXXXX 240
           WGRSTDEFPEV EE NES+ KLGDEKPVHED TAGVN E++A XXXXXXXXXXXXXXXXX
Sbjct: 181 WGRSTDEFPEVAEEANESQ-KLGDEKPVHEDGTAGVNTENTAKXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXSLLALKTEERKVDPKEFASLQQLSSKKENQDVFIKLGSDKDKRKETADKEE 300
           XXXXXXX  SLLALKTEERKVDPKEFASLQQLSSKKENQDVFIKLGSDKDKRKE ADKEE
Sbjct: 241 XXXXXXXRKSLLALKTEERKVDPKEFASLQQLSSKKENQDVFIKLGSDKDKRKEIADKEE 300

Query: 301 RTKKSLTINEFLKPAEGERHFTPGGR-GXXXXXXXXXXXXXXXXXXXXAAPSIGDPGQFP 360
           RTKKS++INEFLKPA+GERH+TPGGR  XXXXXXXXXX          AAPSI DPGQFP
Sbjct: 301 RTKKSVSINEFLKPADGERHYTPGGRXXXXXXXXXXXXYVSSSMSSNVAAPSIEDPGQFP 360

Query: 361 TLGAK 363
           TLGAK
Sbjct: 361 TLGAK 364

[Close]
BLAST of Cla97C06G111800 vs. NCBI nr
Match: XP_008459799.1 (PREDICTED: H/ACA ribonucleoprotein complex subunit 1-like [Cucumis melo])

HSP 1 Score: 356.3 bits (913), Expect = 1.2e-94
Identity = 266/364 (73.08%), Postives = 292/364 (80.22%), Query Frame = 0 

Query: 1   MATTNPFDLLGDDDAEDPSQLIAAK-HAVAAAPKKGSDHPQAKQAAAAAKLNKPANLPSK 60
           MAT NPFDLLGDDDAEDPSQLIAAK  AVA AP       Q K   + A+ NKPA+LPSK
Sbjct: 1   MATLNPFDLLGDDDAEDPSQLIAAKVAAVATAPLSKKGPAQTKPLPSGAQQNKPASLPSK 60

Query: 61  PLPPAQAVREAKNEGXXXXXXXXXXXXXXXXXXXXXXXXXXXESSNNEHSFSSNPEDGET 120
           PLPPAQAVRE++NEGXXXXXXXXXXXXXXXXXXXXXXXX     S N  + ++ PEDG  
Sbjct: 61  PLPPAQAVRESRNEGXXXXXXXXXXXXXXXXXXXXXXXXGFNRDSANSENINA-PEDGVG 120

Query: 121 IRTTERRGGYGGPRGRGGRRGGFNNGDSVDGERPRGVFERHSGTGRGNEFKREGSGRGNW 180
            +TTERR GYGGPR    RRGGFN+G++ +GERPR  FERHSGTGRGNEFKREGSGRGNW
Sbjct: 121 GKTTERR-GYGGPRXXXXRRGGFNDGENAEGERPRRAFERHSGTGRGNEFKREGSGRGNW 180

Query: 181 GRSTDEFPEVTEE-VNESEKKLGDEKPVHEDDTAGVNIESSAXXXXXXXXXXXXXXXXXX 240
           GRSTDEF EV EE VNE+EK +GDEKP+ E+DT+G N +  A   XXXXXXXXXXXXXXX
Sbjct: 181 GRSTDEFAEVAEETVNETEKNVGDEKPIQENDTSGANTDDPAKEPXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXSLLALKTEERKVDPKEFASLQQLSSKKENQDVFIKLGSDKDKRKETADKEE 300
           XXXX     SLLALKTEERKVDPKEFAS+QQLSSKK+N D+FIKLGS+KDKRKE ADKEE
Sbjct: 241 XXXXEDKRKSLLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGSEKDKRKEIADKEE 300

Query: 301 RTKKSLTINEFLKPAEGERHFTPGGRGXXXXXXXXXXXXXXXXXXXXAAPSIGDPGQFPT 360
           RTKKSL+INEFL+PAEGERH+TPGGR XXXXXXXX            AAPSI DPGQFP 
Sbjct: 301 RTKKSLSINEFLRPAEGERHYTPGGR-XXXXXXXXRGGYSGSSMSNVAAPSIEDPGQFPI 360

Query: 361 LGAK 363
           LGAK
Sbjct: 361 LGAK 361

[Close]
BLAST of Cla97C06G111800 vs. NCBI nr
Match: XP_022933027.1 (RGG repeats nuclear RNA binding protein A-like [Cucurbita moschata])

HSP 1 Score: 355.5 bits (911), Expect = 2.1e-94
Identity = 265/369 (71.82%), Postives = 279/369 (75.61%), Query Frame = 0 

Query: 1   MATTNPFDLLGDDDAEDPSQLIAAKHAVAAAPKKGSDHPQAKQAAAAAKLNKPANLPSKP 60
           MATTNPFDLLGDDDAEDPSQLIAAKHA     +KGSDHPQ KQAAAAAK NKPANLPSKP
Sbjct: 1   MATTNPFDLLGDDDAEDPSQLIAAKHAAVVLSRKGSDHPQGKQAAAAAKQNKPANLPSKP 60

Query: 61  LPPAQAVREAKNEGXXXXXXXXXXXXXXXXXXXXXXXXXXXESSNNEHSFSSNPEDGETI 120
           LPPAQAVREAKNEG XXXXXXXXXXXXXXXXXXXXXXX   E   N++SFSSNPEDGE  
Sbjct: 61  LPPAQAVREAKNEGGXXXXXXXXXXXXXXXXXXXXXXXFNREFPYNDYSFSSNPEDGEXX 120

Query: 121 RTTERRGGYGGPRGRGGRRGGFNNGDSVDGERPRGVFERHSGTGRGNEFKREGSGRGNWG 180
                                   G++ DGER RG FER S TG GN+FKREGSGRGNWG
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXGEASDGERFRGAFERQSETGYGNDFKREGSGRGNWG 180

Query: 181 RSTDEFPEVTEEVNESEKKLGDEKPVHEDDTAGVNIESSAXXXXXXXXXXXXXXXXXXXX 240
           R TDEF E  EEVNE++KK+GDEKPVHEDD      ESSA        XXXX        
Sbjct: 181 RPTDEFSEGAEEVNETQKKVGDEKPVHEDD------ESSAKQLEEKEPXXXXMTLEEYEK 240

Query: 241 XXXXXXXSLLALKTEERKVDPKEFASLQQLSSKKENQDVFIKLGSDKDKRKETADKEERT 300
                  +LLALKTEERKVDPKEFAS+QQLSSKK+NQDVFIKLGSDKDKRKE ADKEERT
Sbjct: 241 LKEEKRKALLALKTEERKVDPKEFASMQQLSSKKDNQDVFIKLGSDKDKRKEIADKEERT 300

Query: 301 KKSLTINEFLKPAEGERHFTPGGRG-------XXXXXXXXXXXXXXXXXXXXAAPSIGDP 360
           KKSL+INEFLKPAEGERH+ PGGRG       XXXXXXXXXXXXXXXXXXXX APSI DP
Sbjct: 301 KKSLSINEFLKPAEGERHYMPGGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPSIEDP 360

Query: 361 GQFPTLGAK 363
           GQFPTLGAK
Sbjct: 361 GQFPTLGAK 363

[Close]
BLAST of Cla97C06G111800 vs. TrEMBL
Match: tr|A0A0A0KCI2|A0A0A0KCI2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G105680 PE=4 SV=1)

HSP 1 Score: 406.8 bits (1044), Expect = 5.3e-110
Identity = 293/364 (80.49%), Postives = 306/364 (84.07%), Query Frame = 0 

Query: 1   MATTNPFDLLGDDDAEDPSQLIAAKHAVAAAPKKGSDHPQAK-QAAAAAKLNKPANLPSK 60
           MATTNPFDLLGDDDAEDPSQL+A K A AAAPKKGSDHPQAK       KL+KPANLPSK
Sbjct: 1   MATTNPFDLLGDDDAEDPSQLMAVKQA-AAAPKKGSDHPQAKXXXXXXXKLSKPANLPSK 60

Query: 61  PLPPAQAVREAKNEGXXXXXXXXXXXXXXXXXXXXXXXXXXXESSNNEHSFSSNPEDGET 120
           PLPPAQAVREAKNEG      XXXXXXXXXXXXXXXXXXXXXES NNE+SFSSNPEDGET
Sbjct: 61  PLPPAQAVREAKNEG--GRGGXXXXXXXXXXXXXXXXXXXXXESPNNEYSFSSNPEDGET 120

Query: 121 IRTTERRGGYGGPRGRGGRRGGFNNGDSVDGERPRGVFERHSGTGRGNEFKREGSGRGNW 180
            RTTE+RGGY           GF NGD+ DGERPRG FERHSGTGRGNEFKREGSGRGNW
Sbjct: 121 GRTTEKRGGYXXXXXXXXXXXGFYNGDTADGERPRGAFERHSGTGRGNEFKREGSGRGNW 180

Query: 181 GRSTDEFPEVTEEVNESEKKLGDEKPVHEDDTAGVNIESSAXXXXXXXXXXXXXXXXXXX 240
           GRS +EFPEV EE NES+ KLGDEKPVHEDDTAGVN E+ AXXXXXXXXXXXXXXXXXXX
Sbjct: 181 GRSAEEFPEVAEEANESQ-KLGDEKPVHEDDTAGVNTENPAXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXSLLALKTEERKVDPKEFASLQQLSSKKENQDVFIKLGSDKDKRKETADKEER 300
           X       SLLALKTEERKVDPKEFASLQQLSSKKENQD+FIKLGSDKDKRKETADKEER
Sbjct: 241 XLLDEKRKSLLALKTEERKVDPKEFASLQQLSSKKENQDIFIKLGSDKDKRKETADKEER 300

Query: 301 TKKSLTINEFLKPAEGERHFTPGGR-GXXXXXXXXXXXXXXXXXXXXAAPSIGDPGQFPT 360
           TKKS++INEFLKPAEGE+H+TPGGR  XXXXXXXXXX          AAPSI DPGQFPT
Sbjct: 301 TKKSVSINEFLKPAEGEKHYTPGGRXXXXXXXXXXXXYVGSSMSSNVAAPSIEDPGQFPT 360

Query: 361 LGAK 363
           LGAK
Sbjct: 361 LGAK 360

[Close]
BLAST of Cla97C06G111800 vs. TrEMBL
Match: tr|A0A1S3CC85|A0A1S3CC85_CUCME (H/ACA ribonucleoprotein complex subunit 1-like OS=Cucumis melo OX=3656 GN=LOC103498822 PE=4 SV=1)

HSP 1 Score: 401.0 bits (1029), Expect = 2.9e-108
Identity = 299/365 (81.92%), Postives = 312/365 (85.48%), Query Frame = 0 

Query: 1   MATTNPFDLLGDDDAEDPSQLIAAKHAVAA-APKKGSDHPQAK-QAAAAAKLNKPANLPS 60
           MATTNPFDLLGDDDAEDPSQL+A K A AA APKKGSDHPQAK      AKLNKPANLPS
Sbjct: 1   MATTNPFDLLGDDDAEDPSQLMAVKQAAAAVAPKKGSDHPQAKXXXXXXAKLNKPANLPS 60

Query: 61  KPLPPAQAVREAKNEGXXXXXXXXXXXXXXXXXXXXXXXXXXXESSNNEHSFSSNPEDGE 120
           KPLPPAQAVREAKNEG  XXXXXXXXXXXXXXXXXXXXXXXXXE++NNE+SFSSNPEDGE
Sbjct: 61  KPLPPAQAVREAKNEGGRXXXXXXXXXXXXXXXXXXXXXXXXXEAANNEYSFSSNPEDGE 120

Query: 121 TIRTTERRGGYGGPRGRGGRRGGFNNGDSVDGERPRGVFERHSGTGRGNEFKREGSGRGN 180
           T RTTE+R                 NGD+ DGERPRGVFERHSGTGRGNEFKREGSGRGN
Sbjct: 121 TGRTTEKRXXXXXXXXXXXXXXXXXNGDTDDGERPRGVFERHSGTGRGNEFKREGSGRGN 180

Query: 181 WGRSTDEFPEVTEEVNESEKKLGDEKPVHEDDTAGVNIESSAXXXXXXXXXXXXXXXXXX 240
           WGRSTDEFPEV EE NES+ KLGDEKPVHED TAGVN E++A XXXXXXXXXXXXXXXXX
Sbjct: 181 WGRSTDEFPEVAEEANESQ-KLGDEKPVHEDGTAGVNTENTAKXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXSLLALKTEERKVDPKEFASLQQLSSKKENQDVFIKLGSDKDKRKETADKEE 300
           XXXXXXX  SLLALKTEERKVDPKEFASLQQLSSKKENQDVFIKLGSDKDKRKE ADKEE
Sbjct: 241 XXXXXXXRKSLLALKTEERKVDPKEFASLQQLSSKKENQDVFIKLGSDKDKRKEIADKEE 300

Query: 301 RTKKSLTINEFLKPAEGERHFTPGGR-GXXXXXXXXXXXXXXXXXXXXAAPSIGDPGQFP 360
           RTKKS++INEFLKPA+GERH+TPGGR  XXXXXXXXXX          AAPSI DPGQFP
Sbjct: 301 RTKKSVSINEFLKPADGERHYTPGGRXXXXXXXXXXXXYVSSSMSSNVAAPSIEDPGQFP 360

Query: 361 TLGAK 363
           TLGAK
Sbjct: 361 TLGAK 364

[Close]
BLAST of Cla97C06G111800 vs. TrEMBL
Match: tr|A0A1S3CBH1|A0A1S3CBH1_CUCME (H/ACA ribonucleoprotein complex subunit 1-like OS=Cucumis melo OX=3656 GN=LOC103498821 PE=4 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 8.1e-95
Identity = 266/364 (73.08%), Postives = 292/364 (80.22%), Query Frame = 0 

Query: 1   MATTNPFDLLGDDDAEDPSQLIAAK-HAVAAAPKKGSDHPQAKQAAAAAKLNKPANLPSK 60
           MAT NPFDLLGDDDAEDPSQLIAAK  AVA AP       Q K   + A+ NKPA+LPSK
Sbjct: 1   MATLNPFDLLGDDDAEDPSQLIAAKVAAVATAPLSKKGPAQTKPLPSGAQQNKPASLPSK 60

Query: 61  PLPPAQAVREAKNEGXXXXXXXXXXXXXXXXXXXXXXXXXXXESSNNEHSFSSNPEDGET 120
           PLPPAQAVRE++NEGXXXXXXXXXXXXXXXXXXXXXXXX     S N  + ++ PEDG  
Sbjct: 61  PLPPAQAVRESRNEGXXXXXXXXXXXXXXXXXXXXXXXXGFNRDSANSENINA-PEDGVG 120

Query: 121 IRTTERRGGYGGPRGRGGRRGGFNNGDSVDGERPRGVFERHSGTGRGNEFKREGSGRGNW 180
            +TTERR GYGGPR    RRGGFN+G++ +GERPR  FERHSGTGRGNEFKREGSGRGNW
Sbjct: 121 GKTTERR-GYGGPRXXXXRRGGFNDGENAEGERPRRAFERHSGTGRGNEFKREGSGRGNW 180

Query: 181 GRSTDEFPEVTEE-VNESEKKLGDEKPVHEDDTAGVNIESSAXXXXXXXXXXXXXXXXXX 240
           GRSTDEF EV EE VNE+EK +GDEKP+ E+DT+G N +  A   XXXXXXXXXXXXXXX
Sbjct: 181 GRSTDEFAEVAEETVNETEKNVGDEKPIQENDTSGANTDDPAKEPXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXSLLALKTEERKVDPKEFASLQQLSSKKENQDVFIKLGSDKDKRKETADKEE 300
           XXXX     SLLALKTEERKVDPKEFAS+QQLSSKK+N D+FIKLGS+KDKRKE ADKEE
Sbjct: 241 XXXXEDKRKSLLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGSEKDKRKEIADKEE 300

Query: 301 RTKKSLTINEFLKPAEGERHFTPGGRGXXXXXXXXXXXXXXXXXXXXAAPSIGDPGQFPT 360
           RTKKSL+INEFL+PAEGERH+TPGGR XXXXXXXX            AAPSI DPGQFP 
Sbjct: 301 RTKKSLSINEFLRPAEGERHYTPGGR-XXXXXXXXRGGYSGSSMSNVAAPSIEDPGQFPI 360

Query: 361 LGAK 363
           LGAK
Sbjct: 361 LGAK 361

[Close]
BLAST of Cla97C06G111800 vs. TrEMBL
Match: tr|A0A0A0K9Z4|A0A0A0K9Z4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G106180 PE=4 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 5.3e-86
Identity = 233/364 (64.01%), Postives = 259/364 (71.15%), Query Frame = 0 

Query: 1   MATTNPFDLLGDDDAEDPSQLIAAK-HAVAAAPKKGSDHPQAKQAAAAAKLNKPANLPSK 60
           M T NPFDLLGDDDAEDPSQLIAAK  AVA AP       Q K   + A+          
Sbjct: 1   MTTLNPFDLLGDDDAEDPSQLIAAKVAAVATAPLSKKAPAQTKPLPSGAQXXXXXXXXXX 60

Query: 61  PLPPAQAVREAKNEGXXXXXXXXXXXXXXXXXXXXXXXXXXXESSNNEHSFSSNPEDGET 120
              PAQAVRE++NEG XXXXXXXXXXXXXXXXXXXXXXX     S N  + ++ PEDG  
Sbjct: 61  XXXPAQAVRESRNEGSXXXXXXXXXXXXXXXXXXXXXXXGFNRDSTNNENINA-PEDGVG 120

Query: 121 IRTTERRGGYGGPRGRGGRRGGFNNGDSVDGERPRGVFERHSGTGRGNEFKREGSGRGNW 180
            +T+ERR GYGGP     RRGGFN+G+  +GERPR  FERHSGTGRGNEFKREGSGRGNW
Sbjct: 121 GKTSERR-GYGGPXXXXXRRGGFNDGEGAEGERPRRAFERHSGTGRGNEFKREGSGRGNW 180

Query: 181 GRSTDEFPEVT-EEVNESEKKLGDEKPVHEDDTAGVNIESSAXXXXXXXXXXXXXXXXXX 240
           GRSTDEF EV  E VNE+EK +GDEKP+ EDDT+GVN E+ A                  
Sbjct: 181 GRSTDEFAEVAGETVNETEKNVGDEKPIQEDDTSGVNTENPAKEPQETEPEDKEMTLEEY 240

Query: 241 XXXXXXXXXSLLALKTEERKVDPKEFASLQQLSSKKENQDVFIKLGSDKDKRKETADKEE 300
                    +LLALKTEERKVDPKEFAS+QQLSSKK+N D+FIKLGS+KDKRKE ADKEE
Sbjct: 241 EKLLEDKRKALLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGSEKDKRKEMADKEE 300

Query: 301 RTKKSLTINEFLKPAEGERHFTPGGRGXXXXXXXXXXXXXXXXXXXXAAPSIGDPGQFPT 360
           RTKKSL+INEFL+PA+GERH+ PGGR XXXXXXXX            AAPSIGDPGQFPT
Sbjct: 301 RTKKSLSINEFLRPADGERHYAPGGR-XXXXXXXXRGGYSGSPMSNVAAPSIGDPGQFPT 360

Query: 361 LGAK 363
           LGAK
Sbjct: 361 LGAK 361

[Close]
BLAST of Cla97C06G111800 vs. TrEMBL
Match: tr|A0A2R6S0I9|A0A2R6S0I9_ACTCH (Plasminogen activator inhibitor 1 RNA-binding protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc00418 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 1.9e-67
Identity = 239/368 (64.95%), Postives = 262/368 (71.20%), Query Frame = 0 

Query: 1   MATTNPFDLLGDDDAEDPSQLIAAKHAVAAAPKKGSDHPQAKQAAAAAKLNKPANLPSKP 60
           MAT NPFDLLGDDD +DPSQLIAA+      PKK     QA+QA       K A LPSKP
Sbjct: 1   MATVNPFDLLGDDDNDDPSQLIAAQQK-KIEPKKAPIQAQAQQA-------KAAKLPSKP 60

Query: 61  LPPAQAVREAKNEGXXXXXXXXXXXXXXXXXXXXXXXXXXXESSNNEHSFS---SNPEDG 120
           LPPAQAVREAK   XXXXXXXXXXXXXXXXXXXXX      E+S +   +S    + E+ 
Sbjct: 61  LPPAQAVREAKXXXXXXXXXXXXXXXXXXXXXXXXNRDSGIENSFSNSGYSGVQGSTEEP 120

Query: 121 ETIRTTERRGGYGGP--RGRGGRRGGFNNGDSVDGERPRGVFERHSGTGRGNEFKREGSG 180
            T + +ERRGG GGP           F+NG+  DGERPR VFER SGTGRGNEFKREG+G
Sbjct: 121 GTGKPSERRGGSGGPXXXXXXXXXXXFSNGEVGDGERPRRVFERRSGTGRGNEFKREGAG 180

Query: 181 RGNWGRSTDEFPEVTEE-VNESEKKLGDEKPVHEDDTAGVNIESSAXXXXXXXXXXXXXX 240
           RGNWG  TDE  +VTEE VNE EK L DEKP  E+D   VN E  A XXXXXXXXXXXXX
Sbjct: 181 RGNWGTQTDENAQVTEEVVNEGEKNLSDEKPPGEEDATNVNKEDPANXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXSLLALKTEERKVDPKEFASLQQLSSKKENQDVFIKLGSDKDKRKETA 300
           XXXXXXXXXXXXX     KTEERKVD KEFASLQQLSSKK+N D+FIKLGS+KDKRKE A
Sbjct: 241 XXXXXXXXXXXXXXXXXNKTEERKVDAKEFASLQQLSSKKDNNDIFIKLGSEKDKRKEFA 300

Query: 301 DKEERTKKSLTINEFLKPAEGERHFTPGGRGXXXXXXXXXXXXXXXXXXXXAAPSIGDPG 360
           DKEE+ KK ++INEFLKPAEG+R+F P    XXXXXXXXX            AP I DPG
Sbjct: 301 DKEEKLKKPVSINEFLKPAEGQRYFNP--XXXXXXXXXXXDHQGGSTMSNVTAPKIEDPG 358

Query: 361 QFPTLGAK 363
           QFPTLGAK
Sbjct: 361 QFPTLGAK 358

[Close]
BLAST of Cla97C06G111800 vs. Swiss-Prot
Match: sp|O23523|RGGA_ARATH (RGG repeats nuclear RNA binding protein A OS=Arabidopsis thaliana OX=3702 GN=RGGA PE=1 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 8.8e-28
Identity = 117/202 (57.92%), Postives = 140/202 (69.31%), Query Frame = 0 

Query: 166 GNEFKREGSGRGNWGRSTDEFPEVTEEVN--ESEKKLGDEKPVHEDDTAGVNIESSAXXX 225
           G++FKR+GSGRGNWG   +E    TE V   E+EK +G EKP  +D  A  N E +    
Sbjct: 160 GSDFKRDGSGRGNWGTPGEEIAAETEAVAGVETEKDVG-EKPAVDDVAADANKEDTV--V 219

Query: 226 XXXXXXXXXXXXXXXXXXXXXXXXSLLALKTEERKVDPKEFASLQQLSSKKENQDVFIKL 285
                XXXX   XXXXXXXXXXXX+L +L T ERKVD K F S+QQLS+KK N ++FIKL
Sbjct: 220 EEKEPXXXXMTLXXXXXXXXXXXXALQSLTTSERKVDTKVFESMQQLSNKKSNDEIFIKL 279

Query: 286 GSDKDKRKETADKEERTKKSLTINEFLKPAEGERHFTPGGRG---XXXXXXXXXXXXXXX 345
           GSDKDKRK+  DKEE+ KK+++INEFLKPAEG  ++  GGRG   XXXXXXXXXXXX   
Sbjct: 280 GSDKDKRKD--DKEEKAKKAVSINEFLKPAEGGNYYR-GGRGXXXXXXXXXXXXXXXESG 339

Query: 346 XXXXXAAPSIGDPGQFPTLGAK 363
                AAP+IGD  QFP+LG K
Sbjct: 340 GYRNEAAPAIGDAAQFPSLGGK 355

[Close]
BLAST of Cla97C06G111800 vs. Swiss-Prot
Match: sp|O23593|RGGB_ARATH (RGG repeats nuclear RNA binding protein B OS=Arabidopsis thaliana OX=3702 GN=RGGB PE=1 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 3.3e-22
Identity = 185/381 (48.56%), Postives = 213/381 (55.91%), Query Frame = 0 

Query: 1   MATTNPFDLLGDDDAEDPSQLIAAKHAVAAAPKKGSDHPQAKQAAAAAKLNKPANLPSKP 60
           MA+ NPFDLL DDDAEDPSQ++A+K     AP                +  K        
Sbjct: 1   MASVNPFDLL-DDDAEDPSQIVASKPLKVVAP---------------VQTAKXXXXXXXX 60

Query: 61  LPPAQAVREAKNEGXXXXXXXXXXXXXXXXXXXXXXXXXXXESSNNEHSFSSNPEDGETI 120
                         XXXXXXXXXXXXXXXXXXXXXXXXXXX    NE+            
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPANENXXXXXXXXXXXX 120

Query: 121 RTTERRGGYGGP--RGRGGRRGGFNN-GDSVDGERPRGVFERHSGTGRGNEFKREGSGRG 180
               R    GGP    RG RRG ++N GDS D ERPR  ++RHS T  GNE KR+G+GR 
Sbjct: 121 XXXXR----GGPVXXYRGDRRGSYSNGGDSGDSERPRKNYDRHSRTAYGNEDKRDGAGRA 180

Query: 181 NWGRSTDEFPEVTEEVNESEKKLGDEKPVHEDDTAGVNIESSAXXXXXXXXXXXXXXXXX 240
           NWG + D+   VT                              XXXXXXXXXXXXXXXXX
Sbjct: 181 NWGTTQDDITPVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXSLLALKTEERKVDPKEFASLQQLSSKKENQD-VFIKLGSDKDKRKETADK 300
           XXXXXXXXXX       EERKVD K F ++QQLSSKK N D VFIKLG++KDKR    ++
Sbjct: 241 XXXXXXXXXXXXXXXXVEERKVDTKAFEAMQQLSSKKSNNDEVFIKLGTEKDKR--ITER 300

Query: 301 EERTKKSLTINEFLKPAEGERHFTP-----GGR------------GXXXXXXXXXXXXXX 360
           EE+T+KSL+INEFLKPA+G+ ++ P     GGR            G  XXXXXXXXXXXX
Sbjct: 301 EEKTRKSLSINEFLKPADGKSYYRPRGGYQGGREGRGPREGNQRDGGRXXXXXXXXXXXX 359

[Close]
BLAST of Cla97C06G111800 vs. Swiss-Prot
Match: sp|Q9SQ56|RGGA_TOBAC (RGG repeats nuclear RNA binding protein A (Fragment) OS=Nicotiana tabacum OX=4097 GN=RggA PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 2.1e-21
Identity = 132/277 (47.65%), Postives = 163/277 (58.84%), Query Frame = 0 

Query: 102 ESSNNEHSFSSN---------PEDGETIRTTERRGGYGGPRGRGGRRGGFNNGDSV---- 161
           ES+++E++F SN          EDGE+ + +ERRG                         
Sbjct: 26  ESADDENAFGSNNGFSGRYRVQEDGESGKLSERRGXXXXXXXXXXXXXXXXXXXXXAAEG 85

Query: 162 DGERPRGVFERHSGTGRGNEF-KREGSGRGNWGRSTDEFPEVTE-EVNESEKKLGDEKPV 221
           +GERPR VF+R SGTGRGNE+          WG   D+  + TE  VN+ EK +  EK  
Sbjct: 86  EGERPRRVFDRRSGTGRGNEYIXXXXXXXXXWGTPADDIAQETEVPVNDGEKIVEAEKEA 145

Query: 222 HEDDTAGVNIESSAXXXXXXXXXXXXXXXXXXXXXXXXXXXSLLALKTEERKVD-PKEFA 281
                         XXXXXXXXXXXXXXXXXX         +LLALK EERKV+  KE  
Sbjct: 146 GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKLMEEKRKALLALKPEERKVNLDKELE 205

Query: 282 SLQQLSSKKENQDVFIKLGSDKDKRKETADKEERTKKSLTINEFLKPAEGERHFTPGGRG 341
           S+Q LS+KK + ++FIKLGS+K+KRKE  +K  +T+   +INEFLKPAEGE +   GG  
Sbjct: 206 SMQLLSNKKNDDEIFIKLGSEKEKRKEAVEKARKTQ---SINEFLKPAEGENYSRRGGXX 265

Query: 342 XXXXXXXXXXXXXXXXXXXXAAPSIGDPGQFPTLGAK 363
           XXXXXXXXXXXXXXXXX   +APSI D GQFP+L AK
Sbjct: 266 XXXXXXXXXXXXXXXXXKSFSAPSIEDVGQFPSLVAK 299

[Close]
BLAST of Cla97C06G111800 vs. Swiss-Prot
Match: sp|Q9LVT8|RGGC_ARATH (RGG repeats nuclear RNA binding protein C OS=Arabidopsis thaliana OX=3702 GN=RGGC PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 5.4e-09
Identity = 57/94 (60.64%), Postives = 70/94 (74.47%), Query Frame = 0 

Query: 269 QLSSKKE-NQDVFIKLGSDKDKRKETADKEERTKKSLTINEFLKPAEGERH-FTPGGRGX 328
           QLS+KK  ++++FIKLGSDK+KRK   D  E+ KKSL+INEFLKPA+G+R+        X
Sbjct: 267 QLSNKKNTDEEIFIKLGSDKEKRK---DATEKAKKSLSINEFLKPADGKRYNGXXXXXXX 326

Query: 329 XXXXXXXXXXXXXXXXXXXAAPSIGDPGQFPTLG 361
           XXXXXXXXXXXXX      AAP+IGD  QFP+LG
Sbjct: 327 XXXXXXXXXXXXXRYAKEAAAPAIGDTAQFPSLG 357

[Close]
BLAST of Cla97C06G111800 vs. TAIR10
Match: AT4G16830.1 (Hyaluronan / mRNA binding family)

HSP 1 Score: 125.9 bits (315), Expect = 4.9e-29
Identity = 117/202 (57.92%), Postives = 140/202 (69.31%), Query Frame = 0 

Query: 166 GNEFKREGSGRGNWGRSTDEFPEVTEEVN--ESEKKLGDEKPVHEDDTAGVNIESSAXXX 225
           G++FKR+GSGRGNWG   +E    TE V   E+EK +G EKP  +D  A  N E +    
Sbjct: 160 GSDFKRDGSGRGNWGTPGEEIAAETEAVAGVETEKDVG-EKPAVDDVAADANKEDTV--V 219

Query: 226 XXXXXXXXXXXXXXXXXXXXXXXXSLLALKTEERKVDPKEFASLQQLSSKKENQDVFIKL 285
                XXXX   XXXXXXXXXXXX+L +L T ERKVD K F S+QQLS+KK N ++FIKL
Sbjct: 220 EEKEPXXXXMTLXXXXXXXXXXXXALQSLTTSERKVDTKVFESMQQLSNKKSNDEIFIKL 279

Query: 286 GSDKDKRKETADKEERTKKSLTINEFLKPAEGERHFTPGGRG---XXXXXXXXXXXXXXX 345
           GSDKDKRK+  DKEE+ KK+++INEFLKPAEG  ++  GGRG   XXXXXXXXXXXX   
Sbjct: 280 GSDKDKRKD--DKEEKAKKAVSINEFLKPAEGGNYYR-GGRGXXXXXXXXXXXXXXXESG 339

Query: 346 XXXXXAAPSIGDPGQFPTLGAK 363
                AAP+IGD  QFP+LG K
Sbjct: 340 GYRNEAAPAIGDAAQFPSLGGK 355

[Close]
BLAST of Cla97C06G111800 vs. TAIR10
Match: AT4G17520.1 (Hyaluronan / mRNA binding family)

HSP 1 Score: 107.5 bits (267), Expect = 1.8e-23
Identity = 185/381 (48.56%), Postives = 213/381 (55.91%), Query Frame = 0 

Query: 1   MATTNPFDLLGDDDAEDPSQLIAAKHAVAAAPKKGSDHPQAKQAAAAAKLNKPANLPSKP 60
           MA+ NPFDLL DDDAEDPSQ++A+K     AP                +  K        
Sbjct: 1   MASVNPFDLL-DDDAEDPSQIVASKPLKVVAP---------------VQTAKXXXXXXXX 60

Query: 61  LPPAQAVREAKNEGXXXXXXXXXXXXXXXXXXXXXXXXXXXESSNNEHSFSSNPEDGETI 120
                         XXXXXXXXXXXXXXXXXXXXXXXXXXX    NE+            
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPANENXXXXXXXXXXXX 120

Query: 121 RTTERRGGYGGP--RGRGGRRGGFNN-GDSVDGERPRGVFERHSGTGRGNEFKREGSGRG 180
               R    GGP    RG RRG ++N GDS D ERPR  ++RHS T  GNE KR+G+GR 
Sbjct: 121 XXXXR----GGPVXXYRGDRRGSYSNGGDSGDSERPRKNYDRHSRTAYGNEDKRDGAGRA 180

Query: 181 NWGRSTDEFPEVTEEVNESEKKLGDEKPVHEDDTAGVNIESSAXXXXXXXXXXXXXXXXX 240
           NWG + D+   VT                              XXXXXXXXXXXXXXXXX
Sbjct: 181 NWGTTQDDITPVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXSLLALKTEERKVDPKEFASLQQLSSKKENQD-VFIKLGSDKDKRKETADK 300
           XXXXXXXXXX       EERKVD K F ++QQLSSKK N D VFIKLG++KDKR    ++
Sbjct: 241 XXXXXXXXXXXXXXXXVEERKVDTKAFEAMQQLSSKKSNNDEVFIKLGTEKDKR--ITER 300

Query: 301 EERTKKSLTINEFLKPAEGERHFTP-----GGR------------GXXXXXXXXXXXXXX 360
           EE+T+KSL+INEFLKPA+G+ ++ P     GGR            G  XXXXXXXXXXXX
Sbjct: 301 EEKTRKSLSINEFLKPADGKSYYRPRGGYQGGREGRGPREGNQRDGGRXXXXXXXXXXXX 359

[Close]
BLAST of Cla97C06G111800 vs. TAIR10
Match: AT5G47210.1 (Hyaluronan / mRNA binding family)

HSP 1 Score: 63.5 bits (153), Expect = 3.0e-10
Identity = 57/94 (60.64%), Postives = 70/94 (74.47%), Query Frame = 0 

Query: 269 QLSSKKE-NQDVFIKLGSDKDKRKETADKEERTKKSLTINEFLKPAEGERH-FTPGGRGX 328
           QLS+KK  ++++FIKLGSDK+KRK   D  E+ KKSL+INEFLKPA+G+R+        X
Sbjct: 267 QLSNKKNTDEEIFIKLGSDKEKRK---DATEKAKKSLSINEFLKPADGKRYNGXXXXXXX 326

Query: 329 XXXXXXXXXXXXXXXXXXXAAPSIGDPGQFPTLG 361
           XXXXXXXXXXXXX      AAP+IGD  QFP+LG
Sbjct: 327 XXXXXXXXXXXXXRYAKEAAAPAIGDTAQFPSLG 357

The following BLAST results are available for this feature:
BLAST of Cla97C06G111800 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022973886.16.5e-11275.82RGG repeats nuclear RNA binding protein A-like [Cucurbita maxima][more]
XP_004150996.17.9e-11080.49PREDICTED: cyclin-dependent kinase 13-like [Cucumis sativus] >KGN46514.1 hypothe... [more]
XP_008459800.14.4e-10881.92PREDICTED: H/ACA ribonucleoprotein complex subunit 1-like [Cucumis melo][more]
XP_008459799.11.2e-9473.08PREDICTED: H/ACA ribonucleoprotein complex subunit 1-like [Cucumis melo][more]
XP_022933027.12.1e-9471.82RGG repeats nuclear RNA binding protein A-like [Cucurbita moschata][more]
BLAST of Cla97C06G111800 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KCI2|A0A0A0KCI2_CUCSA5.3e-11080.49Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G105680 PE=4 SV=1[more]
tr|A0A1S3CC85|A0A1S3CC85_CUCME2.9e-10881.92H/ACA ribonucleoprotein complex subunit 1-like OS=Cucumis melo OX=3656 GN=LOC103... [more]
tr|A0A1S3CBH1|A0A1S3CBH1_CUCME8.1e-9573.08H/ACA ribonucleoprotein complex subunit 1-like OS=Cucumis melo OX=3656 GN=LOC103... [more]
tr|A0A0A0K9Z4|A0A0A0K9Z4_CUCSA5.3e-8664.01Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G106180 PE=4 SV=1[more]
tr|A0A2R6S0I9|A0A2R6S0I9_ACTCH1.9e-6764.95Plasminogen activator inhibitor 1 RNA-binding protein OS=Actinidia chinensis var... [more]
BLAST of Cla97C06G111800 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|O23523|RGGA_ARATH8.8e-2857.92RGG repeats nuclear RNA binding protein A OS=Arabidopsis thaliana OX=3702 GN=RGG... [more]
sp|O23593|RGGB_ARATH3.3e-2248.56RGG repeats nuclear RNA binding protein B OS=Arabidopsis thaliana OX=3702 GN=RGG... [more]
sp|Q9SQ56|RGGA_TOBAC2.1e-2147.65RGG repeats nuclear RNA binding protein A (Fragment) OS=Nicotiana tabacum OX=409... [more]
sp|Q9LVT8|RGGC_ARATH5.4e-0960.64RGG repeats nuclear RNA binding protein C OS=Arabidopsis thaliana OX=3702 GN=RGG... [more]
BLAST of Cla97C06G111800 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G16830.14.9e-2957.92Hyaluronan / mRNA binding family[more]
AT4G17520.11.8e-2348.56Hyaluronan / mRNA binding family[more]
AT5G47210.13.0e-1060.64Hyaluronan / mRNA binding family[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019084Stm1-like_N
IPR006861HABP4_PAIRBP1-bd
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C06G111800.1Cla97C06G111800.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 235..258
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 251..362
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 279..323
NoneNo IPR availablePANTHERPTHR12299:SF42SUBFAMILY NOT NAMEDcoord: 1..360
NoneNo IPR availablePANTHERPTHR12299HYALURONIC ACID-BINDING PROTEIN 4coord: 1..360
IPR006861Hyaluronan/mRNA-binding proteinSMARTSM01233HABP4_PAI_RBP1_2coord: 153..260
e-value: 2.2E-28
score: 110.3
IPR006861Hyaluronan/mRNA-binding proteinPFAMPF04774HABP4_PAI-RBP1coord: 155..259
e-value: 1.3E-25
score: 90.4
IPR019084Stm1-like, N-terminalPFAMPF09598Stm1_Ncoord: 1..80
e-value: 4.1E-21
score: 75.5

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C06G111800Silver-seed gourdcarwmbB0078
Cla97C06G111800Silver-seed gourdcarwmbB1018
Cla97C06G111800Cucumber (Gy14) v2cgybwmbB446
Cla97C06G111800Cucumber (Gy14) v2cgybwmbB453
Cla97C06G111800Cucumber (Gy14) v1cgywmbB182
Cla97C06G111800Cucumber (Gy14) v1cgywmbB596
Cla97C06G111800Cucurbita maxima (Rimu)cmawmbB377
Cla97C06G111800Cucurbita maxima (Rimu)cmawmbB924
Cla97C06G111800Cucurbita moschata (Rifu)cmowmbB361
Cla97C06G111800Cucurbita moschata (Rifu)cmowmbB899
Cla97C06G111800Wild cucumber (PI 183967)cpiwmbB495
Cla97C06G111800Wild cucumber (PI 183967)cpiwmbB501
Cla97C06G111800Cucumber (Chinese Long) v3cucwmbB487
Cla97C06G111800Cucumber (Chinese Long) v3cucwmbB494
Cla97C06G111800Cucumber (Chinese Long) v2cuwmbB468
Cla97C06G111800Cucumber (Chinese Long) v2cuwmbB474
Cla97C06G111800Bottle gourd (USVL1VR-Ls)lsiwmbB026
Cla97C06G111800Melon (DHL92) v3.6.1medwmbB118
Cla97C06G111800Melon (DHL92) v3.5.1mewmbB127
Cla97C06G111800Watermelon (Charleston Gray)wcgwmbB273
Cla97C06G111800Watermelon (97103) v1wmwmbB408
Cla97C06G111800Wax gourdwgowmbB094