Cla97C06G111560 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C06G111560
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Pentatricopeptide repeat-containing family protein
Location	Cla97Chr06 : 2360658 .. 2364593 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAATATGGAGGGCTCCCTTGTGGGCGATATCTATTCCATTTGCCATGGAATATTCAACACCCCTTACCAAGCTAATTGCTCGCACTGGTGGTTTTGCGGCAACAGAAACTCACGGTGTGCGAGATTGGTCAAGCACAGTGGCTACAGAACACCCGATCGGACGCAAACCAGACGAGATCAATCGGACAGAAACTCTGGGCTGAGCGCCACAAAGTCTGGATGGTCGAACCAGCGAAAGGACGACGTTGCGGCGTGCACGGCGCAAGCGACAGCAGCCGCGACGTGGGTTGAAGACCGGCGGCTGTTGCAGGGAGAGAGAAAAATGGAAGGGACCAGCGGCCAGCCTTCACGAGAAGACAACCTTGAGGATTGGTTGAAGATTGTTTGGGCAAGAAAGGTTTATATATAGTTTGCTATAACATGGTTATAGCTTTATGTTACTTACTGATCAGGCCACATCAAAGAAAGTCATTACAAGGGAAGAAGCAGGAAAGAAGAAAGTCATTTCAAGCAACAAAGTTTAGCTTATATAGGAGGAATTAAATTATTGGGACGTTTTTAAATATAGTAAAATGAGTCAAACTACTTATAAATATAGAAAAATTTTATTGTATAGATCGCGATTGATGTTTATCATGATAGTGTATATCAATCAATCGCTAATAAACAGATAAATTTTTCTATATGTGTAAATAGTTTGATATTTTTTCTATTTATAATAATTTTTCTAAATAATTTGTGCAATACGATATTGACATATTTTTACTTTTTTTAATTAAGCATATTTATACAATTTTTAAAAGCGTAATATTTTTTAAATGAGAGCAATTTTTGTCTATATAAAAATAATAATAAATAACTTAAGAGTATTATTAAAACTTTTGAAAGTTTACAATATTTTTTTTATATAAAATGCTAATGATTTTCATTTAAAAAGTGGCGATAATTAAAATTTACTTTAAAGAACTATTGAAACTTTGAATGGTTAAAAAATTTCTTTTTTGAGTAAATTGCAAAAACTACATCCACCGTAGTATGGTGGTACTTATTACTTTCAAACTTTCAATGTAAAATTAAGCTCATAATTAAAATTGAACTCTTAAGCTTACAATAATGGTAAAAATTGAACACAAATGATAAAAATTGAACCTACATGCTTATACAAATATTAAAATTTATATAAGTTTATAAATTTGAAGGTTCAATTTGACCAATTTTAATTTCAAAATTGAATGTTTAAGGATGTAATTACAACTCCTATTATACTTTAGGGGTATTTTTGTAATTTAGACAAGAACTAAAGCAAACAACAAATCCAACCAATTAAAGCCAAATTGCTTTTGAAATCGATAAAGTGATTTTAAAAAAATCTTAACCGTGTTTCTTATTTACTAAATCAAATTATTAATTAATCTATCATAATCACTTTTTTAATTTTAACTAACAGGTAAAAGTTAATAGGCTTTTAGATTATGATTTTCTAAAAATCTACGACATTATTAACTATACATTGTAACGATATTCTTCCATATTAATATAATCTTCACACATATATTTTAAAATTTTAATTGATTCTATTTTTTATAACAATTATTTTTTAAATAAAATTGGCTAAAATTGAAATCATATAAAGTTCTAAAAAAAATTATAATAAATTATAAATTAATTATAAAATAATAAGTCTATTTTAGTTCTTATAATTAAATTGACCCAATTTAATATTAATTTATCAAATATCTAACTAATTTTTTTAATTTAAAACTAAAATTCACCGAATACTATTTTATTTTCTTGAACAGTAACTAGTATTTTTTATAATTTAACCAAATAAACACAATAAAAATAATAAATATAAAAAAAACTTCAAATATCAAGTTTTATTTGGAATCTTTTTAAATATAACAAAAGTAATTAAAATATTTACAAATTAAAATTTGACTGTGTTCATCGTAGATTATTATCTGCATCACGAAAGACACGATAGTCTAGTATAGTTTATTTGTGGATCAAATATTTTGTTATTAGTTCTAAATATATTTTGATTTTTAAATATGAAGATAATTTCTCTATTTGTTTTTTCTTTTCTTTTTCCTTTCTTTTTGAATGCACCGCACTCTCTCCCCCAGGAATTCCACTGCACAGGATCGGCTGAACAGTTTCCGTCTATGCAAAATAGAGGAGGCGATATGCTTAGCCAAATTCAATCCGAGATAACTTCTTCAAGCGCCGAAGTTGATTTTGAGGTGGGACAGAAAATCCCACTAAGATGGTAAATTCCGAAGCTTTCAACCTTCCATCTGCACATTAGATGTTTGTTAAAATGTCGTGCCTGAAATTCGTCAAGATTCTCTTGTTTTCGCCGCAATTCGATTAGATTTTGGTCACTTGGTTCAAACATAAGCATGTTCTTGATTTATACACCAATTAAATAGGTATGACTGTTAGGTGGCCAAGGCTTTTAACGCCTACATATTTATCTCAGATTATTAGGAAGCAGAATAATCCCTTAACAGCTTACCAACTGTTTAAGGAAGCCAAATGTAGGTACCCAGATTATCGGCACAATGGTCCGGTGTACGCCGCGATGATTGATATACTCGGAAATTCGGGGAGGATTTCTGAGATGAGAGAAGTGTTGGATCAGATGAGAGATGACTCTTGTGAATGCAAAGATTCTGTATTTTCATTTGCAATTAAAACGTATGCTAGTCAGGGATTATTGGAAGATGGTATATCTCTTTTTAAAAGTCTTGGGAGATTTAACTGTACCGATAGAACACAAACTTTTAATACCCTTTTGGAAATCCTGTTGAATCAATCTCAGCTTGATGCTGCCTGTCAGCTTTTTCAGCAGTGTTCTTATGGTTGGGAAGTGAAATCCAGGACTCAGTCCTTGAATTTGCTGATGCAATCTCTCTGCCAGAGAGGCCAGTCTGAACTTGCTTTACATGTCTTTCAAGAAATGGATTACCAAAGTTGCTATCCAAATAGACTGAGTTATTTGATTTTAATGAAAGGATTGTGTCAAGATGGTAGGCTTAATGAGGCCATCCATTTGTTGTATTCCATGTTTTGGCGGATTTCTCAAAGGGGTGGTGGAGGGGACATAGTAATTTACAGAACCCTGCTGTTTGCTTTGTGTGATAATGGAGAGATAGAGCAAGCTGTGGAAATACTTGGCAAGATCTTGAGGAAAGGACTGAAAGCCCCTAAGCGAGCTCATTACCGGATTGACTTAGATCAATGCAGGAATAGCAAGCTCACTATTGGGGAAATCAAGAGTTTAATCAATGAAGCTTTAATCAAAGGCGGAATTCCCAGTTCAGATAGCTATTGTGCCATGGCTGTTGATCTATATAACGAAAATGAGATTGATCAGGGAGATAAAGTGGTTAGCCACATGGTAGCTAAAGGCTTCAGGCCACCGCCGTCGATCTATGAAGCAAAAGCGGCTGCATTATGCAAAGAAGGCAAAGTCGATGATGCAGTGAAAGTAATTGAAGAGGAAATAGTGAAGGGAAGTGGTGTTCCAACTGTTGCATTGTACAACATAGTTCTGAAGGGTCTGTGTGATGAGGGCAAATCAACAGTGGCTATGGAGTATTTGAAGAAAATGGCAAAGCAGGTCGGTCTTGTTGCAAACAAAGGAACTTACAGCACTTTAGTACATGGACTTTGTCGTGAAAATCGATACGTTGAAGCATGCAAGGTTTTAGAGGAGATGGTTATCAAATCGTTTTCGCCTTGTTCTAACACATTCAATACACTAATTAGAGGCCTTTGCTCAGTTGGAAAACACTATGAAGCTGTGATGTGGTTGGAAGAAATGATTAGCCAAGGTCAATTGCCTCATGTTTCTGTCTGGAATTCTTTGGTTTCATCTCTGTGTTGCAACCTGACTGGCACCGCTATGTGGTCCAAGGTTTTATGA

mRNA sequence

ATGGATAATATGGAGGGCTCCCTTGTGGGCGATATCTATTCCATTTGCCATGGAATATTCAACACCCCTTACCAAGCTAATTGCTCGCACTGGTGGTTTTGCGGCAACAGAAACTCACGGTGTGCGAGATTGGTCAAGCACAGTGGCTACAGAACACCCGATCGGACGCAAACCAGACGAGATCAATCGGACAGAAACTCTGGGCTGAGCGCCACAAAGTCTGGATGGTCGAACCAGCGAAAGGACGACGTTGCGGCGTGCACGGCGCAAGCGACAGCAGCCGCGACGTGGGTTGAAGACCGGCGGCTGTTGCAGGGAGAGAGAAAAATGGAAGGGACCAGCGGCCAGCCTTCACGAGAAGACAACCTTGAGGATTGGTTGAAGATTGTTTGGGCAAGAAAGGAATTCCACTGCACAGGATCGGCTGAACAGTTTCCGTCTATGCAAAATAGAGGAGGCGATATGCTTAGCCAAATTCAATCCGAGATAACTTCTTCAAGCGCCGAAGTTGATTTTGAGATTATTAGGAAGCAGAATAATCCCTTAACAGCTTACCAACTGTTTAAGGAAGCCAAATGTAGGTACCCAGATTATCGGCACAATGGTCCGGTGTACGCCGCGATGATTGATATACTCGGAAATTCGGGGAGGATTTCTGAGATGAGAGAAGTGTTGGATCAGATGAGAGATGACTCTTGTGAATGCAAAGATTCTGTATTTTCATTTGCAATTAAAACGTATGCTAGTCAGGGATTATTGGAAGATGGTATATCTCTTTTTAAAAGTCTTGGGAGATTTAACTGTACCGATAGAACACAAACTTTTAATACCCTTTTGGAAATCCTGTTGAATCAATCTCAGCTTGATGCTGCCTGTCAGCTTTTTCAGCAGTGTTCTTATGGTTGGGAAGTGAAATCCAGGACTCAGTCCTTGAATTTGCTGATGCAATCTCTCTGCCAGAGAGGCCAGTCTGAACTTGCTTTACATGTCTTTCAAGAAATGGATTACCAAAGTTGCTATCCAAATAGACTGAGTTATTTGATTTTAATGAAAGGATTGTGTCAAGATGGTAGGCTTAATGAGGCCATCCATTTGTTGTATTCCATGTTTTGGCGGATTTCTCAAAGGGGTGGTGGAGGGGACATAGTAATTTACAGAACCCTGCTGTTTGCTTTGTGTGATAATGGAGAGATAGAGCAAGCTGTGGAAATACTTGGCAAGATCTTGAGGAAAGGACTGAAAGCCCCTAAGCGAGCTCATTACCGGATTGACTTAGATCAATGCAGGAATAGCAAGCTCACTATTGGGGAAATCAAGAGTTTAATCAATGAAGCTTTAATCAAAGGCGGAATTCCCAGTTCAGATAGCTATTGTGCCATGGCTGTTGATCTATATAACGAAAATGAGATTGATCAGGGAGATAAAGTGGTTAGCCACATGGTAGCTAAAGGCTTCAGGCCACCGCCGTCGATCTATGAAGCAAAAGCGGCTGCATTATGCAAAGAAGGCAAAGTCGATGATGCAGTGAAAGTAATTGAAGAGGAAATAGTGAAGGGAAGTGGTGTTCCAACTGTTGCATTGTACAACATAGTTCTGAAGGGTCTGTGTGATGAGGGCAAATCAACAGTGGCTATGGAGTATTTGAAGAAAATGGCAAAGCAGGTCGGTCTTGTTGCAAACAAAGGAACTTACAGCACTTTAGTACATGGACTTTGTCGTGAAAATCGATACGTTGAAGCATGCAAGGTTTTAGAGGAGATGGTTATCAAATCGTTTTCGCCTTGTTCTAACACATTCAATACACTAATTAGAGGCCTTTGCTCAGTTGGAAAACACTATGAAGCTGTGATGTGGTTGGAAGAAATGATTAGCCAAGGTCAATTGCCTCATGTTTCTGTCTGGAATTCTTTGGTTTCATCTCTGTGTTGCAACCTGACTGGCACCGCTATGTGGTCCAAGGTTTTATGA

Coding sequence (CDS)

ATGGATAATATGGAGGGCTCCCTTGTGGGCGATATCTATTCCATTTGCCATGGAATATTCAACACCCCTTACCAAGCTAATTGCTCGCACTGGTGGTTTTGCGGCAACAGAAACTCACGGTGTGCGAGATTGGTCAAGCACAGTGGCTACAGAACACCCGATCGGACGCAAACCAGACGAGATCAATCGGACAGAAACTCTGGGCTGAGCGCCACAAAGTCTGGATGGTCGAACCAGCGAAAGGACGACGTTGCGGCGTGCACGGCGCAAGCGACAGCAGCCGCGACGTGGGTTGAAGACCGGCGGCTGTTGCAGGGAGAGAGAAAAATGGAAGGGACCAGCGGCCAGCCTTCACGAGAAGACAACCTTGAGGATTGGTTGAAGATTGTTTGGGCAAGAAAGGAATTCCACTGCACAGGATCGGCTGAACAGTTTCCGTCTATGCAAAATAGAGGAGGCGATATGCTTAGCCAAATTCAATCCGAGATAACTTCTTCAAGCGCCGAAGTTGATTTTGAGATTATTAGGAAGCAGAATAATCCCTTAACAGCTTACCAACTGTTTAAGGAAGCCAAATGTAGGTACCCAGATTATCGGCACAATGGTCCGGTGTACGCCGCGATGATTGATATACTCGGAAATTCGGGGAGGATTTCTGAGATGAGAGAAGTGTTGGATCAGATGAGAGATGACTCTTGTGAATGCAAAGATTCTGTATTTTCATTTGCAATTAAAACGTATGCTAGTCAGGGATTATTGGAAGATGGTATATCTCTTTTTAAAAGTCTTGGGAGATTTAACTGTACCGATAGAACACAAACTTTTAATACCCTTTTGGAAATCCTGTTGAATCAATCTCAGCTTGATGCTGCCTGTCAGCTTTTTCAGCAGTGTTCTTATGGTTGGGAAGTGAAATCCAGGACTCAGTCCTTGAATTTGCTGATGCAATCTCTCTGCCAGAGAGGCCAGTCTGAACTTGCTTTACATGTCTTTCAAGAAATGGATTACCAAAGTTGCTATCCAAATAGACTGAGTTATTTGATTTTAATGAAAGGATTGTGTCAAGATGGTAGGCTTAATGAGGCCATCCATTTGTTGTATTCCATGTTTTGGCGGATTTCTCAAAGGGGTGGTGGAGGGGACATAGTAATTTACAGAACCCTGCTGTTTGCTTTGTGTGATAATGGAGAGATAGAGCAAGCTGTGGAAATACTTGGCAAGATCTTGAGGAAAGGACTGAAAGCCCCTAAGCGAGCTCATTACCGGATTGACTTAGATCAATGCAGGAATAGCAAGCTCACTATTGGGGAAATCAAGAGTTTAATCAATGAAGCTTTAATCAAAGGCGGAATTCCCAGTTCAGATAGCTATTGTGCCATGGCTGTTGATCTATATAACGAAAATGAGATTGATCAGGGAGATAAAGTGGTTAGCCACATGGTAGCTAAAGGCTTCAGGCCACCGCCGTCGATCTATGAAGCAAAAGCGGCTGCATTATGCAAAGAAGGCAAAGTCGATGATGCAGTGAAAGTAATTGAAGAGGAAATAGTGAAGGGAAGTGGTGTTCCAACTGTTGCATTGTACAACATAGTTCTGAAGGGTCTGTGTGATGAGGGCAAATCAACAGTGGCTATGGAGTATTTGAAGAAAATGGCAAAGCAGGTCGGTCTTGTTGCAAACAAAGGAACTTACAGCACTTTAGTACATGGACTTTGTCGTGAAAATCGATACGTTGAAGCATGCAAGGTTTTAGAGGAGATGGTTATCAAATCGTTTTCGCCTTGTTCTAACACATTCAATACACTAATTAGAGGCCTTTGCTCAGTTGGAAAACACTATGAAGCTGTGATGTGGTTGGAAGAAATGATTAGCCAAGGTCAATTGCCTCATGTTTCTGTCTGGAATTCTTTGGTTTCATCTCTGTGTTGCAACCTGACTGGCACCGCTATGTGGTCCAAGGTTTTATGA

Protein sequence

MDNMEGSLVGDIYSICHGIFNTPYQANCSHWWFCGNRNSRCARLVKHSGYRTPDRTQTRRDQSDRNSGLSATKSGWSNQRKDDVAACTAQATAAATWVEDRRLLQGERKMEGTSGQPSREDNLEDWLKIVWARKEFHCTGSAEQFPSMQNRGGDMLSQIQSEITSSSAEVDFEIIRKQNNPLTAYQLFKEAKCRYPDYRHNGPVYAAMIDILGNSGRISEMREVLDQMRDDSCECKDSVFSFAIKTYASQGLLEDGISLFKSLGRFNCTDRTQTFNTLLEILLNQSQLDAACQLFQQCSYGWEVKSRTQSLNLLMQSLCQRGQSELALHVFQEMDYQSCYPNRLSYLILMKGLCQDGRLNEAIHLLYSMFWRISQRGGGGDIVIYRTLLFALCDNGEIEQAVEILGKILRKGLKAPKRAHYRIDLDQCRNSKLTIGEIKSLINEALIKGGIPSSDSYCAMAVDLYNENEIDQGDKVVSHMVAKGFRPPPSIYEAKAAALCKEGKVDDAVKVIEEEIVKGSGVPTVALYNIVLKGLCDEGKSTVAMEYLKKMAKQVGLVANKGTYSTLVHGLCRENRYVEACKVLEEMVIKSFSPCSNTFNTLIRGLCSVGKHYEAVMWLEEMISQGQLPHVSVWNSLVSSLCCNLTGTAMWSKVL

Homology

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BLAST of Cla97C06G111560 vs. NCBI nr
Match: XP_016902498.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g05600 isoform X1 [Cucumis melo] >XP_016902499.1 PREDICTED: pentatricopeptide repeat-containing protein At1g05600 isoform X1 [Cucumis melo])

HSP 1 Score: 461.1 bits (1185), Expect = 6.4e-126
Identity = 285/302 (94.37%), Postives = 296/302 (98.01%), Query Frame = 0


Query: 173 EIIRKQNNPLTAYQLFKEAKCRYPDYRHNGPVYAAMIDILGNSGRISEMREVLDQMRDDS 232
           +IIRKQNNPLTAYQLFKEAKCRYPDYRHNGPVYAAMI+ILGNSGR+SEMREV+DQMRDDS
Sbjct: 16  QIIRKQNNPLTAYQLFKEAKCRYPDYRHNGPVYAAMINILGNSGRVSEMREVMDQMRDDS 75

Query: 233 CECKDSVFSFAIKTYASQGLLEDGISLFKSLGRFNCTDRTQTFNTLLEILLNQSQLDAAC 292
           CECKDSVFSFAIKTYAS GLLEDGISLFKSLGRFNCT+RTQTFNTLLEILLN+SQL AAC
Sbjct: 76  CECKDSVFSFAIKTYASHGLLEDGISLFKSLGRFNCTNRTQTFNTLLEILLNESQLHAAC 135

Query: 293 QLFQQCSYGWEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSCYPNRLSYXXXXXX 352
           QLFQ+CSYGWEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSCYPNRLSY XXXXX
Sbjct: 136 QLFQECSYGWEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSCYPNRLSYLXXXXX 195

Query: 353 XXXXXXXXXXXXXXXXXFWRISQRGGGGDIVIYRTLLFALCDNGEIEQAVEILGKILRKG 412
           XXXXXXXXXXXXXXXXXFWRIS++G GGDIVIYRTLLFALCDNGEIEQAVEILGKILRKG
Sbjct: 196 XXXXXXXXXXXXXXXXXFWRISRKGSGGDIVIYRTLLFALCDNGEIEQAVEILGKILRKG 255

Query: 413 LKAPKRAHYRIDLDQCRNSKLTIGEIKSLINEALIKGGIPSSDSYCAMAVDLYNENEIDQ 472
           LKAPKRAHYRIDLDQCRN+KLTI EIKSLINEALIKGGIPSSDSYCAMAVDLYNEN+ DQ
Sbjct: 256 LKAPKRAHYRIDLDQCRNNKLTIEEIKSLINEALIKGGIPSSDSYCAMAVDLYNENKTDQ 315

Query: 473 GD 475
           GD
Sbjct: 316 GD 317

[Close]

BLAST of Cla97C06G111560 vs. NCBI nr
Match: XP_004140638.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g05600 isoform X1 [Cucumis sativus] >KGN46470.1 hypothetical protein Csa_6G095860 [Cucumis sativus])

HSP 1 Score: 452.2 bits (1162), Expect = 3.0e-123
Identity = 279/303 (92.08%), Postives = 289/303 (95.38%), Query Frame = 0


Query: 173 EIIRKQNNPLTAYQLFKEAKCRYPDYRHNGPVYAAMIDILGNSGRISEMREVLDQMRDDS 232
           +IIRKQNNP TAYQLFKEAKCRYPDYRHNGPVYA MI+ILGNSGR+SEMREV+DQMRDDS
Sbjct: 16  QIIRKQNNPQTAYQLFKEAKCRYPDYRHNGPVYATMINILGNSGRVSEMREVMDQMRDDS 75

Query: 233 CECKDSVFSFAIKTYASQGLLEDGISLFKSLGRFNCTDRTQTFNTLLEILLNQSQLDAAC 292
           CECKDSVFSFAIKTYAS GLLEDGISLFKS GRFNCT+RTQTFNTLLEILL +SQL AAC
Sbjct: 76  CECKDSVFSFAIKTYASHGLLEDGISLFKSFGRFNCTNRTQTFNTLLEILLKESQLHAAC 135

Query: 293 QLFQQCSYGWEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSCYPNRLSYXXXXXX 352
           QLFQ+CSYGW VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SCYPNRLSY XXXXX
Sbjct: 136 QLFQECSYGWGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSCYPNRLSYLXXXXX 195

Query: 353 XXXXXXXXXXXXXXXXXFWRISQRGGGGDIVIYRTLLFALCDNGEIEQAVEILGKILRKG 412
           XXXXXXXXXXXXXXX  FWRIS++GGGGDIVIYRTLLFALCDNGEIEQAVEILGKILRKG
Sbjct: 196 XXXXXXXXXXXXXXXSMFWRISRKGGGGDIVIYRTLLFALCDNGEIEQAVEILGKILRKG 255

Query: 413 LKAPKRAHYRIDLDQCRNSKLTIGEIKSLINEALIKGGIPSSDSYCAMAVDLYNENEIDQ 472
           LKAPKRAHYRIDLDQCRNS LTI EIKSLINEALIKGGIPSSDSYCAMAVDLYNEN+ DQ
Sbjct: 256 LKAPKRAHYRIDLDQCRNSNLTIEEIKSLINEALIKGGIPSSDSYCAMAVDLYNENKTDQ 315

Query: 473 GDK 476
           GDK
Sbjct: 316 GDK 318

[Close]

BLAST of Cla97C06G111560 vs. NCBI nr
Match: XP_022959953.1 (pentatricopeptide repeat-containing protein At1g05600 [Cucurbita moschata] >XP_022959954.1 pentatricopeptide repeat-containing protein At1g05600 [Cucurbita moschata] >XP_022959955.1 pentatricopeptide repeat-containing protein At1g05600 [Cucurbita moschata])

HSP 1 Score: 424.9 bits (1091), Expect = 5.1e-115
Identity = 268/303 (88.45%), Postives = 284/303 (93.73%), Query Frame = 0


Query: 173 EIIRKQNNPLTAYQLFKEAKCRYPDYRHNGPVYAAMIDILGNSGRISEMREVLDQMRDDS 232
           +IIRKQNNP TAYQLF EAKCRYP+Y+HNGPVYAAMI+ILGNSGRISEMREV+DQM+ DS
Sbjct: 16  QIIRKQNNPFTAYQLFNEAKCRYPNYQHNGPVYAAMINILGNSGRISEMREVIDQMKVDS 75

Query: 233 CECKDSVFSFAIKTYASQGLLEDGISLFKSLGRFNCTDRTQTFNTLLEILLNQSQLDAAC 292
           C+CKDS+FSFAIKTYAS GLLE+GISLFKSLG FNCTDRTQTFNTLLEILLN+SQLDAAC
Sbjct: 76  CQCKDSIFSFAIKTYASHGLLEEGISLFKSLGGFNCTDRTQTFNTLLEILLNESQLDAAC 135

Query: 293 QLFQQCSYGWEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSCYPNRLSYXXXXXX 352
           QLFQQ S+    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  QSCYPNRLSYXXXXXX
Sbjct: 136 QLFQQSSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYQSCYPNRLSYXXXXXX 195

Query: 353 XXXXXXXXXXXXXXXXXFWRISQRGGGGDIVIYRTLLFALCDNGEIEQAVEILGKILRKG 412
           XXXXXXXXXXXXXXXXXFWRIS+RG GGDIVIYRTLLFALCDNGEIEQAVEILGKIL+KG
Sbjct: 196 XXXXXXXXXXXXXXXXXFWRISRRGSGGDIVIYRTLLFALCDNGEIEQAVEILGKILKKG 255

Query: 413 LKAPKRAHYRIDLDQCRNSKLTIGEIKSLINEALIKGGIPSSDSYCAMAVDLYNENEIDQ 472
           LKAPKRAHY IDL+ CR SKLT+ EIK LINEALIKGGIPSSDSYCAMA+DLYNENE DQ
Sbjct: 256 LKAPKRAHYLIDLNYCRISKLTVTEIKCLINEALIKGGIPSSDSYCAMAIDLYNENETDQ 315

Query: 473 GDK 476
           GDK
Sbjct: 316 GDK 318

[Close]

BLAST of Cla97C06G111560 vs. NCBI nr
Match: XP_023514107.1 (pentatricopeptide repeat-containing protein At1g05600 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 423.7 bits (1088), Expect = 1.1e-114
Identity = 267/303 (88.12%), Postives = 284/303 (93.73%), Query Frame = 0


Query: 173 EIIRKQNNPLTAYQLFKEAKCRYPDYRHNGPVYAAMIDILGNSGRISEMREVLDQMRDDS 232
           +IIRKQNNP TAYQLF EAKCRYP+Y+HNGPVYAAMI+ILGNSGRISEMREV+DQM+ DS
Sbjct: 16  QIIRKQNNPFTAYQLFNEAKCRYPNYQHNGPVYAAMINILGNSGRISEMREVIDQMKVDS 75

Query: 233 CECKDSVFSFAIKTYASQGLLEDGISLFKSLGRFNCTDRTQTFNTLLEILLNQSQLDAAC 292
           C+CKDS+FSFAIKTYAS GLLE+GISLFKSLG FNCTDRTQTFNTLLEILLN+SQLDAAC
Sbjct: 76  CQCKDSIFSFAIKTYASHGLLEEGISLFKSLGGFNCTDRTQTFNTLLEILLNESQLDAAC 135

Query: 293 QLFQQCSYGWEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSCYPNRLSYXXXXXX 352
           QLFQQ S+    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  QSCYPNRLSYXXXXXX
Sbjct: 136 QLFQQSSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYQSCYPNRLSYXXXXXX 195

Query: 353 XXXXXXXXXXXXXXXXXFWRISQRGGGGDIVIYRTLLFALCDNGEIEQAVEILGKILRKG 412
           XXXXXXXXXXXXXXXXXFWRIS+RG GGDIVIYRTLLFALCDNGEIEQAVEILGKIL+KG
Sbjct: 196 XXXXXXXXXXXXXXXXXFWRISRRGSGGDIVIYRTLLFALCDNGEIEQAVEILGKILKKG 255

Query: 413 LKAPKRAHYRIDLDQCRNSKLTIGEIKSLINEALIKGGIPSSDSYCAMAVDLYNENEIDQ 472
           LK+PKRAHY IDL+ CR SKLT+ EIK LINEALIKGGIPSSDSYCAMA+DLYNENE DQ
Sbjct: 256 LKSPKRAHYLIDLNYCRISKLTVTEIKCLINEALIKGGIPSSDSYCAMAIDLYNENETDQ 315

Query: 473 GDK 476
           GDK
Sbjct: 316 GDK 318

[Close]

BLAST of Cla97C06G111560 vs. NCBI nr
Match: XP_023004266.1 (pentatricopeptide repeat-containing protein At1g05600 [Cucurbita maxima] >XP_023004267.1 pentatricopeptide repeat-containing protein At1g05600 [Cucurbita maxima] >XP_023004268.1 pentatricopeptide repeat-containing protein At1g05600 [Cucurbita maxima] >XP_023004269.1 pentatricopeptide repeat-containing protein At1g05600 [Cucurbita maxima] >XP_023004270.1 pentatricopeptide repeat-containing protein At1g05600 [Cucurbita maxima])

HSP 1 Score: 422.5 bits (1085), Expect = 2.5e-114
Identity = 266/303 (87.79%), Postives = 284/303 (93.73%), Query Frame = 0


Query: 173 EIIRKQNNPLTAYQLFKEAKCRYPDYRHNGPVYAAMIDILGNSGRISEMREVLDQMRDDS 232
           +IIRKQNNP TAYQLF EAKCRYP+Y+HNGPVYAAMI+ILGNSGRISEMREV+DQM+ DS
Sbjct: 16  QIIRKQNNPFTAYQLFNEAKCRYPNYQHNGPVYAAMINILGNSGRISEMREVIDQMKVDS 75

Query: 233 CECKDSVFSFAIKTYASQGLLEDGISLFKSLGRFNCTDRTQTFNTLLEILLNQSQLDAAC 292
           C+CKDS+FSFAIKTYAS GLLE+GISLFKSLG FNCTDRTQTFNTLLEILLN+SQLDAAC
Sbjct: 76  CQCKDSIFSFAIKTYASHGLLEEGISLFKSLGGFNCTDRTQTFNTLLEILLNESQLDAAC 135

Query: 293 QLFQQCSYGWEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSCYPNRLSYXXXXXX 352
           QLFQQ S+    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  QSCYPNRLSYXXXXXX
Sbjct: 136 QLFQQSSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYQSCYPNRLSYXXXXXX 195

Query: 353 XXXXXXXXXXXXXXXXXFWRISQRGGGGDIVIYRTLLFALCDNGEIEQAVEILGKILRKG 412
           XXXXXXXXXXXXXXXXXFWRIS++G GGDIVIYRTLLFALCDNGEIEQAVEILGKIL+KG
Sbjct: 196 XXXXXXXXXXXXXXXXXFWRISRKGSGGDIVIYRTLLFALCDNGEIEQAVEILGKILKKG 255

Query: 413 LKAPKRAHYRIDLDQCRNSKLTIGEIKSLINEALIKGGIPSSDSYCAMAVDLYNENEIDQ 472
           LK+PKRAHY IDL+ CR SKLT+ EIK LINEALIKGGIPSSDSYCAMA+DLYNENE DQ
Sbjct: 256 LKSPKRAHYLIDLNYCRISKLTVTEIKCLINEALIKGGIPSSDSYCAMAIDLYNENETDQ 315

Query: 473 GDK 476
           GDK
Sbjct: 316 GDK 318

[Close]

BLAST of Cla97C06G111560 vs. TrEMBL
Match: tr|A0A1S4E2N8|A0A1S4E2N8_CUCME (pentatricopeptide repeat-containing protein At1g05600 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498838 PE=4 SV=1)

HSP 1 Score: 461.1 bits (1185), Expect = 4.2e-126
Identity = 285/302 (94.37%), Postives = 296/302 (98.01%), Query Frame = 0


Query: 173 EIIRKQNNPLTAYQLFKEAKCRYPDYRHNGPVYAAMIDILGNSGRISEMREVLDQMRDDS 232
           +IIRKQNNPLTAYQLFKEAKCRYPDYRHNGPVYAAMI+ILGNSGR+SEMREV+DQMRDDS
Sbjct: 16  QIIRKQNNPLTAYQLFKEAKCRYPDYRHNGPVYAAMINILGNSGRVSEMREVMDQMRDDS 75

Query: 233 CECKDSVFSFAIKTYASQGLLEDGISLFKSLGRFNCTDRTQTFNTLLEILLNQSQLDAAC 292
           CECKDSVFSFAIKTYAS GLLEDGISLFKSLGRFNCT+RTQTFNTLLEILLN+SQL AAC
Sbjct: 76  CECKDSVFSFAIKTYASHGLLEDGISLFKSLGRFNCTNRTQTFNTLLEILLNESQLHAAC 135

Query: 293 QLFQQCSYGWEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSCYPNRLSYXXXXXX 352
           QLFQ+CSYGWEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSCYPNRLSY XXXXX
Sbjct: 136 QLFQECSYGWEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSCYPNRLSYLXXXXX 195

Query: 353 XXXXXXXXXXXXXXXXXFWRISQRGGGGDIVIYRTLLFALCDNGEIEQAVEILGKILRKG 412
           XXXXXXXXXXXXXXXXXFWRIS++G GGDIVIYRTLLFALCDNGEIEQAVEILGKILRKG
Sbjct: 196 XXXXXXXXXXXXXXXXXFWRISRKGSGGDIVIYRTLLFALCDNGEIEQAVEILGKILRKG 255

Query: 413 LKAPKRAHYRIDLDQCRNSKLTIGEIKSLINEALIKGGIPSSDSYCAMAVDLYNENEIDQ 472
           LKAPKRAHYRIDLDQCRN+KLTI EIKSLINEALIKGGIPSSDSYCAMAVDLYNEN+ DQ
Sbjct: 256 LKAPKRAHYRIDLDQCRNNKLTIEEIKSLINEALIKGGIPSSDSYCAMAVDLYNENKTDQ 315

Query: 473 GD 475
           GD
Sbjct: 316 GD 317

[Close]

BLAST of Cla97C06G111560 vs. TrEMBL
Match: tr|A0A0A0K9Q4|A0A0A0K9Q4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G095860 PE=4 SV=1)

HSP 1 Score: 452.2 bits (1162), Expect = 2.0e-123
Identity = 279/303 (92.08%), Postives = 289/303 (95.38%), Query Frame = 0


Query: 173 EIIRKQNNPLTAYQLFKEAKCRYPDYRHNGPVYAAMIDILGNSGRISEMREVLDQMRDDS 232
           +IIRKQNNP TAYQLFKEAKCRYPDYRHNGPVYA MI+ILGNSGR+SEMREV+DQMRDDS
Sbjct: 16  QIIRKQNNPQTAYQLFKEAKCRYPDYRHNGPVYATMINILGNSGRVSEMREVMDQMRDDS 75

Query: 233 CECKDSVFSFAIKTYASQGLLEDGISLFKSLGRFNCTDRTQTFNTLLEILLNQSQLDAAC 292
           CECKDSVFSFAIKTYAS GLLEDGISLFKS GRFNCT+RTQTFNTLLEILL +SQL AAC
Sbjct: 76  CECKDSVFSFAIKTYASHGLLEDGISLFKSFGRFNCTNRTQTFNTLLEILLKESQLHAAC 135

Query: 293 QLFQQCSYGWEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSCYPNRLSYXXXXXX 352
           QLFQ+CSYGW VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SCYPNRLSY XXXXX
Sbjct: 136 QLFQECSYGWGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSCYPNRLSYLXXXXX 195

Query: 353 XXXXXXXXXXXXXXXXXFWRISQRGGGGDIVIYRTLLFALCDNGEIEQAVEILGKILRKG 412
           XXXXXXXXXXXXXXX  FWRIS++GGGGDIVIYRTLLFALCDNGEIEQAVEILGKILRKG
Sbjct: 196 XXXXXXXXXXXXXXXSMFWRISRKGGGGDIVIYRTLLFALCDNGEIEQAVEILGKILRKG 255

Query: 413 LKAPKRAHYRIDLDQCRNSKLTIGEIKSLINEALIKGGIPSSDSYCAMAVDLYNENEIDQ 472
           LKAPKRAHYRIDLDQCRNS LTI EIKSLINEALIKGGIPSSDSYCAMAVDLYNEN+ DQ
Sbjct: 256 LKAPKRAHYRIDLDQCRNSNLTIEEIKSLINEALIKGGIPSSDSYCAMAVDLYNENKTDQ 315

Query: 473 GDK 476
           GDK
Sbjct: 316 GDK 318

[Close]

BLAST of Cla97C06G111560 vs. TrEMBL
Match: tr|A0A1S3CB38|A0A1S3CB38_CUCME (pentatricopeptide repeat-containing protein At1g05600 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498838 PE=4 SV=1)

HSP 1 Score: 387.1 bits (993), Expect = 7.8e-104
Identity = 251/267 (94.01%), Postives = 261/267 (97.75%), Query Frame = 0


Query: 208 MIDILGNSGRISEMREVLDQMRDDSCECKDSVFSFAIKTYASQGLLEDGISLFKSLGRFN 267
           MI+ILGNSGR+SEMREV+DQMRDDSCECKDSVFSFAIKTYAS GLLEDGISLFKSLGRFN
Sbjct: 1   MINILGNSGRVSEMREVMDQMRDDSCECKDSVFSFAIKTYASHGLLEDGISLFKSLGRFN 60

Query: 268 CTDRTQTFNTLLEILLNQSQLDAACQLFQQCSYGWEVXXXXXXXXXXXXXXXXXXXXXXX 327
           CT+RTQTFNTLLEILLN+SQL AACQLFQ+CSYGWEVXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  CTNRTQTFNTLLEILLNESQLHAACQLFQECSYGWEVXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 328 XXXXXXXXXQSCYPNRLSYXXXXXXXXXXXXXXXXXXXXXXXFWRISQRGGGGDIVIYRT 387
           XXXXXXXXXQSCYPNRLSY XXXXXXXXXXXXXXXXXXXXXXFWRIS++G GGDIVIYRT
Sbjct: 121 XXXXXXXXXQSCYPNRLSYLXXXXXXXXXXXXXXXXXXXXXXFWRISRKGSGGDIVIYRT 180

Query: 388 LLFALCDNGEIEQAVEILGKILRKGLKAPKRAHYRIDLDQCRNSKLTIGEIKSLINEALI 447
           LLFALCDNGEIEQAVEILGKILRKGLKAPKRAHYRIDLDQCRN+KLTI EIKSLINEALI
Sbjct: 181 LLFALCDNGEIEQAVEILGKILRKGLKAPKRAHYRIDLDQCRNNKLTIEEIKSLINEALI 240

Query: 448 KGGIPSSDSYCAMAVDLYNENEIDQGD 475
           KGGIPSSDSYCAMAVDLYNEN+ DQGD
Sbjct: 241 KGGIPSSDSYCAMAVDLYNENKTDQGD 267

[Close]

BLAST of Cla97C06G111560 vs. TrEMBL
Match: tr|B9RNK1|B9RNK1_RICCO (Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis OX=3988 GN=RCOM_1339630 PE=4 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 7.8e-80
Identity = 160/293 (54.61%), Postives = 193/293 (65.87%), Query Frame = 0


Query: 173 EIIRKQNNPLTAYQLFKEAKCRYPDYRHNGPVYAAMIDILGNSGRISEMREVLDQMRDDS 232
           +IIR Q NPL A ++FKEAK +YP+YRHNGPVYA MI ILG+SGRI+EM+EVLDQMR+DS
Sbjct: 16  QIIRNQKNPLIALRIFKEAKDKYPNYRHNGPVYATMIGILGSSGRITEMKEVLDQMREDS 75

Query: 233 CECKDSVFSFAIKTYASQGLLEDGISLFKSLGRFNCTDRTQTFNTLLEILLNQSQLDAAC 292
           CECKDS+F+ AIKTYA  GLL + ISLFK++ +FNC + T++FNTLL+I++ +S+L+AA 
Sbjct: 76  CECKDSIFANAIKTYARVGLLNEAISLFKNIPQFNCVNWTESFNTLLQIMVKESKLEAAH 135

Query: 293 QLFQQCSYGWEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSCYPNRLSYXXXXXX 352
           +LF + SYGWEV                                Q CYP+R SY      
Sbjct: 136 RLFLESSYGWEVKSRVRSLNLLMDVLCQHNRSDVALQVFQEMNYQGCYPDRDSYRIVMMG 195

Query: 353 XXXXXXXXXXXXXXXXXFWRISQRGGGGDIVIYRTLLFALCDNGEIEQAVEILGKILRKG 412
                            FWRISQ+G G DIVIYR  L ALCD G +EQA+E+LGKILRKG
Sbjct: 196 LCKDGRLNEATHLLYSMFWRISQKGSGEDIVIYRIFLDALCDIGMVEQALEVLGKILRKG 255

Query: 413 LKAPKRAHYRIDLDQCRNSKLTIGEIKSLINEALIKGGIPSSDSYCAMAVDLY 466
           LKAPKR H R+DL  C NS   I   K LINEALI+G IPS  SY AMAVD Y
Sbjct: 256 LKAPKRCHPRLDLSNC-NSDGNIETTKHLINEALIRGAIPSLSSYTAMAVDFY 307

[Close]

BLAST of Cla97C06G111560 vs. TrEMBL
Match: tr|A0A2H5P127|A0A2H5P127_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_092180 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 5.1e-79
Identity = 160/302 (52.98%), Postives = 198/302 (65.56%), Query Frame = 0


Query: 173 EIIRKQNNPLTAYQLFKEAKCRYPDYRHNGPVYAAMIDILGNSGRISEMREVLDQMRDDS 232
           +II+KQ +PLTA ++FKEAK +YP+YRHNGPVYA+MI IL  S RI+EM+EV+DQM+ DS
Sbjct: 16  QIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDS 75

Query: 233 CECKDSVFSFAIKTYASQGLLEDGISLFKSLGRFNCTDRTQTFNTLLEILLNQSQLDAAC 292
           CECKDSVF+ AI+TYA  G L + +SLFK+L +FNC + TQ+FNTLL+ ++ +S+L+AA 
Sbjct: 76  CECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAH 135

Query: 293 QLFQQCSYGWEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSCYPNRLSYXXXXXX 352
            LF +  YGWEV                                Q CYP+R SY      
Sbjct: 136 ILFLRSCYGWEVKSRIQSLNLLMDVLCQRRRSDLALHVFQEMDFQGCYPDRESYHILMKG 195

Query: 353 XXXXXXXXXXXXXXXXXFWRISQRGGGGDIVIYRTLLFALCDNGEIEQAVEILGKILRKG 412
                            FWRISQ+G G DIVIYRTLLFALCD G+I+ A++IL KILRKG
Sbjct: 196 LCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEKILRKG 255

Query: 413 LKAPKRAHYRIDLDQCRNSKLTIGEIKSLINEALIKGGIPSSDSYCAMAVDLYNENEIDQ 472
           LKAPK   +RIDL  C + +  I   KSLINEALI+GGIPS  SY AMAVDLYNE  I +
Sbjct: 256 LKAPKSRRHRIDLCPCNDGE-DIEGAKSLINEALIRGGIPSLASYSAMAVDLYNEGRIVE 315

Query: 473 GD 475
           GD
Sbjct: 316 GD 316

[Close]

BLAST of Cla97C06G111560 vs. Swiss-Prot
Match: sp|Q9SYK1|PPR11_ARATH (Pentatricopeptide repeat-containing protein At1g05600 OS=Arabidopsis thaliana OX=3702 GN=At1g05600 PE=2 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 2.0e-54
Identity = 116/303 (38.28%), Postives = 161/303 (53.14%), Query Frame = 0


Query: 173 EIIRKQNNPLTAYQLFKEAKCRYPDYRHNGPVYAAMIDILGNSGRISEMREVLDQMRDDS 232
           +I++KQ NP+TA +LF+EAK R+P Y HNG VYA MIDILG S R+ EM+ V+++M++DS
Sbjct: 17  QILKKQKNPVTALKLFEEAKERFPSYGHNGSVYATMIDILGKSNRVLEMKYVIERMKEDS 76

Query: 233 CECKDSVFSFAIKTYASQGLLEDGISLFKSLGRFNCTDRTQTFNTLLEILLNQSQLDAAC 292
           CECKDSVF+  I+T++  G LED ISLFKSL  FNC + + +F+TLL+ ++ +S+L+AAC
Sbjct: 77  CECKDSVFASVIRTFSRAGRLEDAISLFKSLHEFNCVNWSLSFDTLLQEMVKESELEAAC 136

Query: 293 QLFQQCSYGWEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSCYPNRLSYXXXXXX 352
            +F++  YGWEV                                Q CYP+R SY      
Sbjct: 137 HIFRKYCYGWEVNSRITALNLLMKVLCQVNRSDLASQVFQEMNYQGCYPDRDSYRILMKG 196

Query: 353 XXXXXXXXXXXXXXXXXFWRISQRGGGGDIVIYRTLLFALCDNGEIEQAVEILGKILRKG 412
                           X                                    GKILRKG
Sbjct: 197 FCLEGKLEEATHLLYSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKILRKG 256

Query: 413 LKAPKRAHYRIDLDQCRNSKLTIGEIKSLINEALIKGGIPSSDSYCAMAVDLYNENEIDQ 472
           LKAPKR ++ I+     +S   I  +K L+ E LI+G IP  DSY AMA DL+ E ++ +
Sbjct: 257 LKAPKRCYHHIEAGHWESSSEGIERVKRLLTETLIRGAIPCLDSYSAMATDLFEEGKLVE 316

Query: 473 GDK 476
           G++
Sbjct: 317 GEE 319

[Close]

BLAST of Cla97C06G111560 vs. Swiss-Prot
Match: sp|Q9LQQ1|PPR20_ARATH (Pentatricopeptide repeat-containing protein At1g07740, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g07740 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.8e-07
Identity = 31/121 (25.62%), Postives = 63/121 (52.07%), Query Frame = 0


Query: 175 IRKQNNPLTAYQLFKEAKCRYPDYRHNGPVYAAMIDILGNSGRISEMREVLDQMRDDSCE 234
           +++  +P  A  LF +   +   +RH+ P Y+++I  L  S     + ++L  +R  +  
Sbjct: 56  LKEIEDPEEALSLFHQ--YQEMGFRHDYPSYSSLIYKLAKSRNFDAVDQILRLVRYRNVR 115

Query: 235 CKDSVFSFAIKTYASQGLLEDGISLFKSLGRFNCTDRTQTFNTLLEILLNQSQLDAACQL 294
           C++S+F   I+ Y   G ++  I +F  +  F+C    Q+ NTL+ +L++  +L+ A   
Sbjct: 116 CRESLFMGLIQHYGKAGSVDKAIDVFHKITSFDCVRTIQSLNTLINVLVDNGELEKAKSF 174

Query: 295 F 296
           F
Sbjct: 176 F 174

[Close]

BLAST of Cla97C06G111560 vs. Swiss-Prot
Match: sp|O81908|PPR2_ARATH (Pentatricopeptide repeat-containing protein At1g02060, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g02060 PE=2 SV=2)

HSP 1 Score: 50.4 bits (119), Expect = 8.5e-05
Identity = 27/103 (26.21%), Postives = 54/103 (52.43%), Query Frame = 0


Query: 198 YRHNGPVYAAMIDILGNSGRISEMREVL--DQMRDDSC-ECKDSVFSFAIKTYASQGLLE 257
           + H    +  M++ LG +  ++  R  L   + R + C + +D  F+  I++Y + GL +
Sbjct: 96  FSHKEQSFFLMLEFLGRARNLNVARNFLFSIERRSNGCVKLQDRYFNSLIRSYGNAGLFQ 155

Query: 258 DGISLFKSLGRFNCTDRTQTFNTLLEILLNQSQLDAACQLFQQ 298
           + + LF+++ +   +    TFN+LL ILL + +   A  LF +
Sbjct: 156 ESVKLFQTMKQMGISPSVLTFNSLLSILLKRGRTGMAHDLFDE 198

[Close]

BLAST of Cla97C06G111560 vs. Swiss-Prot
Match: sp|Q9LFF1|PP281_ARATH (Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MEE40 PE=2 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.1e-04
Identity = 33/125 (26.40%), Postives = 63/125 (50.40%), Query Frame = 0


Query: 166 SSAEVD-FEIIRKQNNPLTAYQLFKEAKCRYPDYRHNGPVYAAMIDILGNSGRISEMREV 225
           SS +V   + +R Q +   A +LF  A  + P++     +Y  ++  LG SG   +M+++
Sbjct: 47  SSTDVKLLDSLRSQPDDSAALRLFNLAS-KKPNFSPEPALYEEILLRLGRSGSFDDMKKI 106

Query: 226 LDQMRDDSCECKDSVFSFAIKTYASQGLLEDGISLFK-SLGRFNCTDRTQTFNTLLEILL 285
           L+ M+   CE   S F   I++YA   L ++ +S+    +  F     T  +N +L +L+
Sbjct: 107 LEDMKSSRCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLV 166

Query: 286 NQSQL 289
           + + L
Sbjct: 167 DGNSL 170

[Close]

BLAST of Cla97C06G111560 vs. TAIR10
Match: AT1G05600.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 215.3 bits (547), Expect = 1.1e-55
Identity = 116/303 (38.28%), Postives = 161/303 (53.14%), Query Frame = 0


Query: 173 EIIRKQNNPLTAYQLFKEAKCRYPDYRHNGPVYAAMIDILGNSGRISEMREVLDQMRDDS 232
           +I++KQ NP+TA +LF+EAK R+P Y HNG VYA MIDILG S R+ EM+ V+++M++DS
Sbjct: 17  QILKKQKNPVTALKLFEEAKERFPSYGHNGSVYATMIDILGKSNRVLEMKYVIERMKEDS 76

Query: 233 CECKDSVFSFAIKTYASQGLLEDGISLFKSLGRFNCTDRTQTFNTLLEILLNQSQLDAAC 292
           CECKDSVF+  I+T++  G LED ISLFKSL  FNC + + +F+TLL+ ++ +S+L+AAC
Sbjct: 77  CECKDSVFASVIRTFSRAGRLEDAISLFKSLHEFNCVNWSLSFDTLLQEMVKESELEAAC 136

Query: 293 QLFQQCSYGWEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSCYPNRLSYXXXXXX 352
            +F++  YGWEV                                Q CYP+R SY      
Sbjct: 137 HIFRKYCYGWEVNSRITALNLLMKVLCQVNRSDLASQVFQEMNYQGCYPDRDSYRILMKG 196

Query: 353 XXXXXXXXXXXXXXXXXFWRISQRGGGGDIVIYRTLLFALCDNGEIEQAVEILGKILRKG 412
                           X                                    GKILRKG
Sbjct: 197 FCLEGKLEEATHLLYSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKILRKG 256

Query: 413 LKAPKRAHYRIDLDQCRNSKLTIGEIKSLINEALIKGGIPSSDSYCAMAVDLYNENEIDQ 472
           LKAPKR ++ I+     +S   I  +K L+ E LI+G IP  DSY AMA DL+ E ++ +
Sbjct: 257 LKAPKRCYHHIEAGHWESSSEGIERVKRLLTETLIRGAIPCLDSYSAMATDLFEEGKLVE 316

Query: 473 GDK 476
           G++
Sbjct: 317 GEE 319

[Close]

BLAST of Cla97C06G111560 vs. TAIR10
Match: AT1G07740.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 59.3 bits (142), Expect = 1.0e-08
Identity = 31/121 (25.62%), Postives = 63/121 (52.07%), Query Frame = 0


Query: 175 IRKQNNPLTAYQLFKEAKCRYPDYRHNGPVYAAMIDILGNSGRISEMREVLDQMRDDSCE 234
           +++  +P  A  LF +   +   +RH+ P Y+++I  L  S     + ++L  +R  +  
Sbjct: 56  LKEIEDPEEALSLFHQ--YQEMGFRHDYPSYSSLIYKLAKSRNFDAVDQILRLVRYRNVR 115

Query: 235 CKDSVFSFAIKTYASQGLLEDGISLFKSLGRFNCTDRTQTFNTLLEILLNQSQLDAACQL 294
           C++S+F   I+ Y   G ++  I +F  +  F+C    Q+ NTL+ +L++  +L+ A   
Sbjct: 116 CRESLFMGLIQHYGKAGSVDKAIDVFHKITSFDCVRTIQSLNTLINVLVDNGELEKAKSF 174

Query: 295 F 296
           F
Sbjct: 176 F 174

[Close]

BLAST of Cla97C06G111560 vs. TAIR10
Match: AT1G02060.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 50.4 bits (119), Expect = 4.7e-06
Identity = 27/103 (26.21%), Postives = 54/103 (52.43%), Query Frame = 0


Query: 198 YRHNGPVYAAMIDILGNSGRISEMREVL--DQMRDDSC-ECKDSVFSFAIKTYASQGLLE 257
           + H    +  M++ LG +  ++  R  L   + R + C + +D  F+  I++Y + GL +
Sbjct: 96  FSHKEQSFFLMLEFLGRARNLNVARNFLFSIERRSNGCVKLQDRYFNSLIRSYGNAGLFQ 155

Query: 258 DGISLFKSLGRFNCTDRTQTFNTLLEILLNQSQLDAACQLFQQ 298
           + + LF+++ +   +    TFN+LL ILL + +   A  LF +
Sbjct: 156 ESVKLFQTMKQMGISPSVLTFNSLLSILLKRGRTGMAHDLFDE 198

[Close]

BLAST of Cla97C06G111560 vs. TAIR10
Match: AT3G53700.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 50.1 bits (118), Expect = 6.2e-06
Identity = 33/125 (26.40%), Postives = 63/125 (50.40%), Query Frame = 0


Query: 166 SSAEVD-FEIIRKQNNPLTAYQLFKEAKCRYPDYRHNGPVYAAMIDILGNSGRISEMREV 225
           SS +V   + +R Q +   A +LF  A  + P++     +Y  ++  LG SG   +M+++
Sbjct: 47  SSTDVKLLDSLRSQPDDSAALRLFNLAS-KKPNFSPEPALYEEILLRLGRSGSFDDMKKI 106

Query: 226 LDQMRDDSCECKDSVFSFAIKTYASQGLLEDGISLFK-SLGRFNCTDRTQTFNTLLEILL 285
           L+ M+   CE   S F   I++YA   L ++ +S+    +  F     T  +N +L +L+
Sbjct: 107 LEDMKSSRCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLV 166

Query: 286 NQSQL 289
           + + L
Sbjct: 167 DGNSL 170

[Close]

BLAST of Cla97C06G111560 vs. TAIR10
Match: AT1G72175.1 (RING/U-box protein with domain of unknown function (DUF 1232))

HSP 1 Score: 44.3 bits (103), Expect = 3.4e-04
Identity = 22/39 (56.41%), Postives = 23/39 (58.97%), Query Frame = 0


Query: 11 DIYSICHGIFNTPYQANCSHWWFCGNRNSRCARLVKHSG 50
          D+ SICH  F  P QANCSH WFCGN    C  LV   G
Sbjct: 8  DLCSICHSHFTAPCQANCSH-WFCGN----CIMLVWRHG 41

The following BLAST results are available for this feature:

BLAST of Cla97C06G111560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016902498.1	6.4e-126	94.37	PREDICTED: pentatricopeptide repeat-containing protein At1g05600 isoform X1 [Cuc...	[more]
XP_004140638.1	3.0e-123	92.08	PREDICTED: pentatricopeptide repeat-containing protein At1g05600 isoform X1 [Cuc...	[more]
XP_022959953.1	5.1e-115	88.45	pentatricopeptide repeat-containing protein At1g05600 [Cucurbita moschata] >XP_0...	[more]
XP_023514107.1	1.1e-114	88.12	pentatricopeptide repeat-containing protein At1g05600 isoform X1 [Cucurbita pepo...	[more]
XP_023004266.1	2.5e-114	87.79	pentatricopeptide repeat-containing protein At1g05600 [Cucurbita maxima] >XP_023...	[more]

BLAST of Cla97C06G111560 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E2N8\|A0A1S4E2N8_CUCME	4.2e-126	94.37	pentatricopeptide repeat-containing protein At1g05600 isoform X1 OS=Cucumis melo...	[more]
tr\|A0A0A0K9Q4\|A0A0A0K9Q4_CUCSA	2.0e-123	92.08	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G095860 PE=4 SV=1	[more]
tr\|A0A1S3CB38\|A0A1S3CB38_CUCME	7.8e-104	94.01	pentatricopeptide repeat-containing protein At1g05600 isoform X2 OS=Cucumis melo...	[more]
tr\|B9RNK1\|B9RNK1_RICCO	7.8e-80	54.61	Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis OX=398...	[more]
tr\|A0A2H5P127\|A0A2H5P127_CITUN	5.1e-79	52.98	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_092180 PE=4 SV=1	[more]

BLAST of Cla97C06G111560 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SYK1\|PPR11_ARATH	2.0e-54	38.28	Pentatricopeptide repeat-containing protein At1g05600 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9LQQ1\|PPR20_ARATH	1.8e-07	25.62	Pentatricopeptide repeat-containing protein At1g07740, mitochondrial OS=Arabidop...	[more]
sp\|O81908\|PPR2_ARATH	8.5e-05	26.21	Pentatricopeptide repeat-containing protein At1g02060, chloroplastic OS=Arabidop...	[more]
sp\|Q9LFF1\|PP281_ARATH	1.1e-04	26.40	Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidop...	[more]

BLAST of Cla97C06G111560 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G05600.1	1.1e-55	38.28	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G07740.1	1.0e-08	25.62	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G02060.1	4.7e-06	26.21	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G53700.1	6.2e-06	26.40	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G72175.1	3.4e-04	56.41	RING/U-box protein with domain of unknown function (DUF 1232)	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0009451	RNA modification
biological_process	GO:0008150	biological_process
cellular_component	GO:0043231	intracellular membrane-bounded organelle
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C06G111560.1	Cla97C06G111560.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 562..608 e-value: 6.8E-12 score: 45.3 coord: 311..355 e-value: 2.1E-10 score: 40.5
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 598..629 e-value: 2.5E-6 score: 25.3 coord: 527..560 e-value: 5.0E-4 score: 18.1 coord: 204..235 e-value: 8.8E-6 score: 23.6 coord: 345..369 e-value: 0.002 score: 16.2 coord: 563..594 e-value: 1.9E-7 score: 28.8 coord: 311..342 e-value: 7.8E-5 score: 20.6
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 383..413 e-value: 0.004 score: 17.2 coord: 205..233 e-value: 0.0085 score: 16.2 coord: 528..552 e-value: 0.018 score: 15.2 coord: 498..514 e-value: 1.1 score: 9.6
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 381..415 score: 10.446
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 595..629 score: 10.611
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 342..372 score: 8.144
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 201..235 score: 9.24
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 236..270 score: 6.467
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 453..487 score: 7.695
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 307..341 score: 9.525
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 524..554 score: 8.276
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 560..594 score: 11.597
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 488..523 score: 7.574
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 271..301 score: 5.656
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 435..540 e-value: 1.0E-10 score: 43.2 coord: 541..646 e-value: 5.6E-24 score: 86.5 coord: 154..289 e-value: 2.9E-17 score: 64.6
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 300..433 e-value: 2.2E-18 score: 68.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..77
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..77
None	No IPR available	PANTHER	PTHR24015:SF542	SUBFAMILY NOT NAMED	coord: 171..638
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 171..638
None	No IPR available	SUPERFAMILY	SSF81901	HCP-like	coord: 521..621 coord: 318..413

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C06G111560	Cla006744	Watermelon (97103) v1	wmwmbB408
Cla97C06G111560	Csa6G095860	Cucumber (Chinese Long) v2	cuwmbB468
Cla97C06G111560	MELO3C022307	Melon (DHL92) v3.5.1	mewmbB127
Cla97C06G111560	ClCG06G002240	Watermelon (Charleston Gray)	wcgwmbB273
Cla97C06G111560	CSPI06G07920	Wild cucumber (PI 183967)	cpiwmbB495
Cla97C06G111560	Cucsa.349750	Cucumber (Gy14) v1	cgywmbB596
Cla97C06G111560	Lsi09G017160	Bottle gourd (USVL1VR-Ls)	lsiwmbB026
Cla97C06G111560	CsGy6G007970	Cucumber (Gy14) v2	cgybwmbB446
Cla97C06G111560	MELO3C022307.2	Melon (DHL92) v3.6.1	medwmbB118
Cla97C06G111560	CsaV3_6G008310	Cucumber (Chinese Long) v3	cucwmbB487
Cla97C06G111560	Bhi12G002053	Wax gourd	wgowmbB094

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C06G111560	Silver-seed gourd	carwmbB0078
Cla97C06G111560	Silver-seed gourd	carwmbB1018
Cla97C06G111560	Cucurbita maxima (Rimu)	cmawmbB371
Cla97C06G111560	Cucurbita maxima (Rimu)	cmawmbB924
Cla97C06G111560	Cucurbita moschata (Rifu)	cmowmbB357
Cla97C06G111560	Cucurbita moschata (Rifu)	cmowmbB899
Cla97C06G111560	Watermelon (Charleston Gray)	wcgwmbB241