Cla97C06G111050 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C06G111050
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	light-regulated protein-like
Location	Cla97Chr06 : 1692251 .. 1692885 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGTTGCAGGCAGCTCTTTCCATGCCACCTCCATCATCATGCTCCCTCCTCCCACCAACTGCCAAATCAATGGCCTTCTCAGTCCCATCTAGCTCCATGCGAAGGCACCCCACTTCTCAAACTCAACGTCCCACCCTAAAAGCAAAGGCAAGTGCGGTCGGACAAGACCCTTCAACTGTTGACTACAGCTCCATCTCCTCGTAAGCCAATTCATTGTACTTGTCGTTGTTATCCTACAATATGTCTGATTTAATACCTTCATTTACTCTTTTGCGTCTGTTTTTGCAGTGTTTTTCCAGCAGAGGCTTGTGACACTGTTGGAGGTGAAGCTTGTGACGTGGAAATGTATCCTGAAGTAAAGCTAAAACCAGAGGCCAAAAAAGGGGGTAGTGTTACAGAGCCAGTTGATAGAGAGTATCTTCAATATGACAGTCCCAAGACGTAAGATCTCAACACAACAATCCTTTCATCCTCTACAAATTCATTTCCTGTGAAACAACACTATTTCATACTTCTATATGCATTAATATTCTTGTTTTTTTAATGATTGCGGCAGAGTCTTTCCAGCAGAGGCTTGTGATGATCTGGGTGGTGAATTCTGTGATCCAGAGTATCAAAAAGGAGTTTACTAG

mRNA sequence

ATGCAGTTGCAGGCAGCTCTTTCCATGCCACCTCCATCATCATGCTCCCTCCTCCCACCAACTGCCAAATCAATGGCCTTCTCAGTCCCATCTAGCTCCATGCGAAGGCACCCCACTTCTCAAACTCAACGTCCCACCCTAAAAGCAAAGGCAAGTGCGGTCGGACAAGACCCTTCAACTGTTGACTACAGCTCCATCTCCTCTGTTTTTCCAGCAGAGGCTTGTGACACTGTTGGAGGTGAAGCTTGTGACGTGGAAATGTATCCTGAAGTAAAGCTAAAACCAGAGGCCAAAAAAGGGGGTAGTGTTACAGAGCCAGTTGATAGAGAGTATCTTCAATATGACAGTCCCAAGACAGTCTTTCCAGCAGAGGCTTGTGATGATCTGGGTGGTGAATTCTGTGATCCAGAGTATCAAAAAGGAGTTTACTAG

Coding sequence (CDS)

ATGCAGTTGCAGGCAGCTCTTTCCATGCCACCTCCATCATCATGCTCCCTCCTCCCACCAACTGCCAAATCAATGGCCTTCTCAGTCCCATCTAGCTCCATGCGAAGGCACCCCACTTCTCAAACTCAACGTCCCACCCTAAAAGCAAAGGCAAGTGCGGTCGGACAAGACCCTTCAACTGTTGACTACAGCTCCATCTCCTCTGTTTTTCCAGCAGAGGCTTGTGACACTGTTGGAGGTGAAGCTTGTGACGTGGAAATGTATCCTGAAGTAAAGCTAAAACCAGAGGCCAAAAAAGGGGGTAGTGTTACAGAGCCAGTTGATAGAGAGTATCTTCAATATGACAGTCCCAAGACAGTCTTTCCAGCAGAGGCTTGTGATGATCTGGGTGGTGAATTCTGTGATCCAGAGTATCAAAAAGGAGTTTACTAG

Protein sequence

MQLQAALSMPPPSSCSLLPPTAKSMAFSVPSSSMRRHPTSQTQRPTLKAKASAVGQDPSTVDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGGSVTEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY

Homology

[Close]

BLAST of Cla97C06G111050 vs. NCBI nr
Match: XP_022991991.1 (light-regulated protein, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 256.1 bits (653), Expect = 6.8e-65
Identity = 129/143 (90.21%), Postives = 133/143 (93.01%), Query Frame = 0


Query: 1   MQLQAALSMPPPSSCSLLPPTAKSMAFSVPSSSMRRHPTSQTQRPTLKAKASAVGQDPST 60
           MQLQAA S+  PSSC LLPPT K MAFSVPS SMRRHPTSQT RP LKAKASAVGQDPST
Sbjct: 1   MQLQAAPSLAHPSSCYLLPPTTKLMAFSVPSRSMRRHPTSQTHRPILKAKASAVGQDPST 60

Query: 61  VDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGGSVTEPVDREYLQYDSPKTV 120
           VDYSS+SSVFPAEAC+TVGGEACDVEMYPEVKLKPEAKKGGSV+E VDREYLQYDSPKTV
Sbjct: 61  VDYSSVSSVFPAEACETVGGEACDVEMYPEVKLKPEAKKGGSVSEAVDREYLQYDSPKTV 120

Query: 121 FPAEACDDLGGEFCDPEYQKGVY 144
           FPAEACDDLGGEFCDPEYQKGVY
Sbjct: 121 FPAEACDDLGGEFCDPEYQKGVY 143

[Close]

BLAST of Cla97C06G111050 vs. NCBI nr
Match: XP_022953556.1 (light-regulated protein-like [Cucurbita moschata])

HSP 1 Score: 255.0 bits (650), Expect = 1.5e-64
Identity = 128/143 (89.51%), Postives = 133/143 (93.01%), Query Frame = 0


Query: 1   MQLQAALSMPPPSSCSLLPPTAKSMAFSVPSSSMRRHPTSQTQRPTLKAKASAVGQDPST 60
           MQLQAA S+  PSSC LLPPT K MAFS+PS SMRRHPTSQT RP LKAKASAVGQDPST
Sbjct: 1   MQLQAAPSLAHPSSCYLLPPTTKLMAFSIPSRSMRRHPTSQTHRPILKAKASAVGQDPST 60

Query: 61  VDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGGSVTEPVDREYLQYDSPKTV 120
           VDYSS+SSVFPAEAC+TVGGEACDVEMYPEVKLKPEAKKGGSV+E VDREYLQYDSPKTV
Sbjct: 61  VDYSSMSSVFPAEACETVGGEACDVEMYPEVKLKPEAKKGGSVSEAVDREYLQYDSPKTV 120

Query: 121 FPAEACDDLGGEFCDPEYQKGVY 144
           FPAEACDDLGGEFCDPEYQKGVY
Sbjct: 121 FPAEACDDLGGEFCDPEYQKGVY 143

[Close]

BLAST of Cla97C06G111050 vs. NCBI nr
Match: XP_023547464.1 (light-regulated protein, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 253.4 bits (646), Expect = 4.4e-64
Identity = 127/143 (88.81%), Postives = 132/143 (92.31%), Query Frame = 0


Query: 1   MQLQAALSMPPPSSCSLLPPTAKSMAFSVPSSSMRRHPTSQTQRPTLKAKASAVGQDPST 60
           MQLQAA S+  PSSC LLPPT K MAFS+PS S RRHPTSQT RP LKAKASAVGQDPST
Sbjct: 1   MQLQAAPSLAHPSSCYLLPPTTKLMAFSIPSRSKRRHPTSQTHRPILKAKASAVGQDPST 60

Query: 61  VDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGGSVTEPVDREYLQYDSPKTV 120
           VDYSS+SSVFPAEAC+TVGGEACDVEMYPEVKLKPEAKKGGSV+E VDREYLQYDSPKTV
Sbjct: 61  VDYSSVSSVFPAEACETVGGEACDVEMYPEVKLKPEAKKGGSVSEAVDREYLQYDSPKTV 120

Query: 121 FPAEACDDLGGEFCDPEYQKGVY 144
           FPAEACDDLGGEFCDPEYQKGVY
Sbjct: 121 FPAEACDDLGGEFCDPEYQKGVY 143

[Close]

BLAST of Cla97C06G111050 vs. NCBI nr
Match: NP_001267523.1 (light-regulated protein-like [Cucumis sativus] >BAA06153.1 CR9 [Cucumis sativus] >CBZ13178.1 putative cytokinin-repressed protein [Cucumis sativus] >KGN46414.1 hypothetical protein Csa_6G091870 [Cucumis sativus] >prf||2016504A cytokinin-repressed protein CR9)

HSP 1 Score: 234.6 bits (597), Expect = 2.1e-58
Identity = 122/143 (85.31%), Postives = 128/143 (89.51%), Query Frame = 0


Query: 1   MQLQAALSMPPPSSCSLLPPTAKSMAFSVPSSSMRRHPTSQTQRPTLKAKASAVGQDPST 60
           MQ QAALS+  P SCSLLPPTAKSMAFS+P+ SM R       + TLKAKASAVGQDPST
Sbjct: 1   MQFQAALSIASP-SCSLLPPTAKSMAFSIPTRSMPRQ-----SKGTLKAKASAVGQDPST 60

Query: 61  VDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGGSVTEPVDREYLQYDSPKTV 120
           VDYSS+SSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKG SVTEPV+REYLQYDSPKTV
Sbjct: 61  VDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGNSVTEPVEREYLQYDSPKTV 120

Query: 121 FPAEACDDLGGEFCDPEYQKGVY 144
           FPAEACDDLGGEFCDPEYQKGVY
Sbjct: 121 FPAEACDDLGGEFCDPEYQKGVY 137

[Close]

BLAST of Cla97C06G111050 vs. NCBI nr
Match: XP_008459906.1 (PREDICTED: light-regulated protein-like [Cucumis melo])

HSP 1 Score: 230.7 bits (587), Expect = 3.1e-57
Identity = 120/143 (83.92%), Postives = 128/143 (89.51%), Query Frame = 0


Query: 1   MQLQAALSMPPPSSCSLLPPTAKSMAFSVPSSSMRRHPTSQTQRPTLKAKASAVGQDPST 60
           MQLQAALS+ PP SCSLLPPTAK MAFS+ + S+ R       + TLKAKASAVGQ+PST
Sbjct: 1   MQLQAALSIAPP-SCSLLPPTAKLMAFSIQTRSLPRQ-----SQGTLKAKASAVGQEPST 60

Query: 61  VDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGGSVTEPVDREYLQYDSPKTV 120
           VDYSS+SSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKG SVTEPV+REYLQYDSPKTV
Sbjct: 61  VDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGSSVTEPVEREYLQYDSPKTV 120

Query: 121 FPAEACDDLGGEFCDPEYQKGVY 144
           FPAEACDDLGGEFCDPEYQKGVY
Sbjct: 121 FPAEACDDLGGEFCDPEYQKGVY 137

[Close]

BLAST of Cla97C06G111050 vs. TrEMBL
Match: tr|Q39636|Q39636_CUCSA (CR9 protein OS=Cucumis sativus OX=3659 GN=CR9 PE=2 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 1.4e-58
Identity = 122/143 (85.31%), Postives = 128/143 (89.51%), Query Frame = 0


Query: 1   MQLQAALSMPPPSSCSLLPPTAKSMAFSVPSSSMRRHPTSQTQRPTLKAKASAVGQDPST 60
           MQ QAALS+  P SCSLLPPTAKSMAFS+P+ SM R       + TLKAKASAVGQDPST
Sbjct: 1   MQFQAALSIASP-SCSLLPPTAKSMAFSIPTRSMPRQ-----SKGTLKAKASAVGQDPST 60

Query: 61  VDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGGSVTEPVDREYLQYDSPKTV 120
           VDYSS+SSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKG SVTEPV+REYLQYDSPKTV
Sbjct: 61  VDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGNSVTEPVEREYLQYDSPKTV 120

Query: 121 FPAEACDDLGGEFCDPEYQKGVY 144
           FPAEACDDLGGEFCDPEYQKGVY
Sbjct: 121 FPAEACDDLGGEFCDPEYQKGVY 137

[Close]

BLAST of Cla97C06G111050 vs. TrEMBL
Match: tr|A0A1S3CBQ8|A0A1S3CBQ8_CUCME (light-regulated protein-like OS=Cucumis melo OX=3656 GN=LOC103498886 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 2.0e-57
Identity = 120/143 (83.92%), Postives = 128/143 (89.51%), Query Frame = 0


Query: 1   MQLQAALSMPPPSSCSLLPPTAKSMAFSVPSSSMRRHPTSQTQRPTLKAKASAVGQDPST 60
           MQLQAALS+ PP SCSLLPPTAK MAFS+ + S+ R       + TLKAKASAVGQ+PST
Sbjct: 1   MQLQAALSIAPP-SCSLLPPTAKLMAFSIQTRSLPRQ-----SQGTLKAKASAVGQEPST 60

Query: 61  VDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGGSVTEPVDREYLQYDSPKTV 120
           VDYSS+SSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKG SVTEPV+REYLQYDSPKTV
Sbjct: 61  VDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGSSVTEPVEREYLQYDSPKTV 120

Query: 121 FPAEACDDLGGEFCDPEYQKGVY 144
           FPAEACDDLGGEFCDPEYQKGVY
Sbjct: 121 FPAEACDDLGGEFCDPEYQKGVY 137

[Close]

BLAST of Cla97C06G111050 vs. TrEMBL
Match: tr|E5GB60|E5GB60_CUCME (Cytokinin-repressed protein CR9 OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.9e-42
Identity = 98/143 (68.53%), Postives = 102/143 (71.33%), Query Frame = 0


Query: 1   MQLQAALSMPPPSSCSLLPPTAKSMAFSVPSSSMRRHPTSQTQRPTLKAKASAVGQDPST 60
           MQLQAALS+ PP SCSLLPPTAK MAFS+                               
Sbjct: 1   MQLQAALSIAPP-SCSLLPPTAKLMAFSIQ------------------------------ 60

Query: 61  VDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGGSVTEPVDREYLQYDSPKTV 120
                 +SVFPAEACDTVGGEACDVEMYPEVKLKPEAKKG SVTEPV+REYLQYDSPKTV
Sbjct: 61  ------TSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGSSVTEPVEREYLQYDSPKTV 106

Query: 121 FPAEACDDLGGEFCDPEYQKGVY 144
           FPAEACDDLGGEFCDPEYQKGVY
Sbjct: 121 FPAEACDDLGGEFCDPEYQKGVY 106

[Close]

BLAST of Cla97C06G111050 vs. TrEMBL
Match: tr|M5XTK9|M5XTK9_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G216700 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.0e-36
Identity = 89/146 (60.96%), Postives = 107/146 (73.29%), Query Frame = 0


Query: 3   LQAALSMPPPSSCSL---LPPTAKSMAFSVPSSSMRRHPTSQTQRPTLKAKASAVGQDPS 62
           +QA L +PPPS   L    P T KS+A  +P SS         + P L  KA+ V +DPS
Sbjct: 1   MQAILRLPPPSVSPLALATPTTTKSLA--LPCSSSIPRLLKSPRCPPL--KAANVTEDPS 60

Query: 63  TVDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGGSVT--EPVDREYLQYDSP 122
            VDYSS++SVFPAEACDT+GGEACDVEMYPEVKLKPE +   + T  E +DR+YL+YDSP
Sbjct: 61  AVDYSSVTSVFPAEACDTIGGEACDVEMYPEVKLKPEDRNNTAKTTSEQLDRDYLEYDSP 120

Query: 123 KTVFPAEACDDLGGEFCDPEYQKGVY 144
           KTVFP EACDDLGGEFC+PEYQ+GV+
Sbjct: 121 KTVFPGEACDDLGGEFCEPEYQRGVH 142

[Close]

BLAST of Cla97C06G111050 vs. TrEMBL
Match: tr|A0A2P5C1B3|A0A2P5C1B3_PARAD (Light regulated Lir OS=Parasponia andersonii OX=3476 GN=PanWU01x14_193120 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.4e-34
Identity = 84/145 (57.93%), Postives = 102/145 (70.34%), Query Frame = 0


Query: 3   LQAALSMPPPSSCSLLPPTAKSMAFS-VPSSSMRRHPTSQTQRPTLKAKASAVGQDPSTV 62
           +QA L++PP     L+    KS+A    P  +  +  T+  +R  L+ K +A   D +TV
Sbjct: 1   MQATLNLPPSPPLPLIIAPTKSVALPWNPLITTTKLQTTTFRR--LQLKPTAAANDAATV 60

Query: 63  DYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGGSVT---EPVDREYLQYDSPK 122
           DYSSI+SVFPAEAC+T+GGEACDVEMYPEVKL PE     + T   EPVDR+YLQYD PK
Sbjct: 61  DYSSITSVFPAEACETIGGEACDVEMYPEVKLSPEPSNTAAATTALEPVDRDYLQYDDPK 120

Query: 123 TVFPAEACDDLGGEFCDPEYQKGVY 144
           TVFP EACDDLGGEFC+PEYQ GVY
Sbjct: 121 TVFPGEACDDLGGEFCEPEYQTGVY 143

[Close]

BLAST of Cla97C06G111050 vs. Swiss-Prot
Match: sp|Q96500|LIRP1_ARATH (Light-regulated protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LIR1 PE=1 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 4.7e-25
Identity = 54/85 (63.53%), Postives = 66/85 (77.65%), Query Frame = 0


Query: 57  DPSTVDY-SSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGGSVTEPVDREYLQYD 116
           DP+TVDY SSI SVFPAEAC+ + G AC  ++YPEVKL  +       +EPVDREY +Y+
Sbjct: 54  DPNTVDYNSSILSVFPAEACEVISGYACSADIYPEVKLDTKPVSRPVASEPVDREYEEYN 113

Query: 117 SPKTVFPAEACDDLGGEFCDPEYQK 141
           SPKTVF  EACDDLGGEFC+P++QK
Sbjct: 114 SPKTVFREEACDDLGGEFCEPDFQK 138

[Close]

BLAST of Cla97C06G111050 vs. Swiss-Prot
Match: sp|Q03200|LIRP1_ORYSJ (Light-regulated protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=LIR1 PE=1 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 8.9e-24
Identity = 55/90 (61.11%), Postives = 64/90 (71.11%), Query Frame = 0


Query: 47  LKAKASAVGQDPSTVDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGGS--VT 106
           ++A A+AV  + + VDYSS  SVFP EACD +GGEAC+V+MYPE KL   A    S    
Sbjct: 36  VRAAAAAVAVEAAEVDYSSNISVFPMEACDLIGGEACNVQMYPEAKLSSSAAVAVSRAAA 95

Query: 107 EPVDREYLQYDSPKTVFPAEACDDLGGEFC 135
           E VDR+YL YD P TVFP EACDDLGGEFC
Sbjct: 96  EEVDRDYLSYDEPTTVFPEEACDDLGGEFC 125

[Close]

BLAST of Cla97C06G111050 vs. TAIR10
Match: AT3G26740.1 (CCR-like)

HSP 1 Score: 115.5 bits (288), Expect = 2.6e-26
Identity = 54/85 (63.53%), Postives = 66/85 (77.65%), Query Frame = 0


Query: 57  DPSTVDY-SSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGGSVTEPVDREYLQYD 116
           DP+TVDY SSI SVFPAEAC+ + G AC  ++YPEVKL  +       +EPVDREY +Y+
Sbjct: 54  DPNTVDYNSSILSVFPAEACEVISGYACSADIYPEVKLDTKPVSRPVASEPVDREYEEYN 113

Query: 117 SPKTVFPAEACDDLGGEFCDPEYQK 141
           SPKTVF  EACDDLGGEFC+P++QK
Sbjct: 114 SPKTVFREEACDDLGGEFCEPDFQK 138

The following BLAST results are available for this feature:

BLAST of Cla97C06G111050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022991991.1	6.8e-65	90.21	light-regulated protein, chloroplastic-like [Cucurbita maxima]	[more]
XP_022953556.1	1.5e-64	89.51	light-regulated protein-like [Cucurbita moschata]	[more]
XP_023547464.1	4.4e-64	88.81	light-regulated protein, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
NP_001267523.1	2.1e-58	85.31	light-regulated protein-like [Cucumis sativus] >BAA06153.1 CR9 [Cucumis sativus]...	[more]
XP_008459906.1	3.1e-57	83.92	PREDICTED: light-regulated protein-like [Cucumis melo]	[more]

BLAST of Cla97C06G111050 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|Q39636\|Q39636_CUCSA	1.4e-58	85.31	CR9 protein OS=Cucumis sativus OX=3659 GN=CR9 PE=2 SV=1	[more]
tr\|A0A1S3CBQ8\|A0A1S3CBQ8_CUCME	2.0e-57	83.92	light-regulated protein-like OS=Cucumis melo OX=3656 GN=LOC103498886 PE=4 SV=1	[more]
tr\|E5GB60\|E5GB60_CUCME	1.9e-42	68.53	Cytokinin-repressed protein CR9 OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|M5XTK9\|M5XTK9_PRUPE	2.0e-36	60.96	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G216700 PE=4 SV=1	[more]
tr\|A0A2P5C1B3\|A0A2P5C1B3_PARAD	1.4e-34	57.93	Light regulated Lir OS=Parasponia andersonii OX=3476 GN=PanWU01x14_193120 PE=4 S...	[more]

BLAST of Cla97C06G111050 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q96500\|LIRP1_ARATH	4.7e-25	63.53	Light-regulated protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LIR1...	[more]
sp\|Q03200\|LIRP1_ORYSJ	8.9e-24	61.11	Light-regulated protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 ...	[more]

BLAST of Cla97C06G111050 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G26740.1	2.6e-26	63.53	CCR-like	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0009507	chloroplast

Vocabulary: **INTERPRO**
Term	Definition
IPR009856	Lir1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C06G111050.1	Cla97C06G111050.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009856	Light regulated Lir1	PFAM	PF07207	Lir1	coord: 3..135 e-value: 5.5E-47 score: 159.3
IPR009856	Light regulated Lir1	PANTHER	PTHR36762	FAMILY NOT NAMED	coord: 16..143
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..55
None	No IPR available	PANTHER	PTHR36762:SF2	A.THALIANA MRNA ORF19 FROM CHROMOSOME III	coord: 16..143

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C06G111050	Cla001482	Watermelon (97103) v1	wmwmbB407
Cla97C06G111050	Csa6G091870	Cucumber (Chinese Long) v2	cuwmbB468
Cla97C06G111050	MELO3C022354	Melon (DHL92) v3.5.1	mewmbB127
Cla97C06G111050	CSPI06G07390	Wild cucumber (PI 183967)	cpiwmbB495
Cla97C06G111050	CmaCh17G014030	Cucurbita maxima (Rimu)	cmawmbB369
Cla97C06G111050	CmoCh17G013530	Cucurbita moschata (Rifu)	cmowmbB354
Cla97C06G111050	CmoCh11G015720	Cucurbita moschata (Rifu)	cmowmbB122
Cla97C06G111050	Lsi09G017660	Bottle gourd (USVL1VR-Ls)	lsiwmbB026
Cla97C06G111050	MELO3C022354.2	Melon (DHL92) v3.6.1	medwmbB118
Cla97C06G111050	Carg11563	Silver-seed gourd	carwmbB0011
Cla97C06G111050	CsaV3_6G007780	Cucumber (Chinese Long) v3	cucwmbB487

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C06G111050	Silver-seed gourd	carwmbB0721
Cla97C06G111050	Silver-seed gourd	carwmbB1032
Cla97C06G111050	Cucumber (Gy14) v2	cgybwmbB446
Cla97C06G111050	Cucumber (Gy14) v1	cgywmbB596
Cla97C06G111050	Cucurbita maxima (Rimu)	cmawmbB922
Cla97C06G111050	Cucurbita moschata (Rifu)	cmowmbB897
Cla97C06G111050	Watermelon (Charleston Gray)	wcgwmbB273
Cla97C06G111050	Wax gourd	wgowmbB086